name: biokernel
description: Biomedical OS Core & MCP Server
keywords:
- kernel
- os
- mcp
- api
- system
measurable_outcome: Routes 100% of API requests to correct sub-agent with <200ms latency.
license: MIT
metadata:
author: Biomedical OS Team
version: "1.0.0"
compatibility:
- system: Python 3.10+
allowed-tools:
- run_shell_command
- read_file
BioKernel
The BioKernel is the central orchestration layer of the Biomedical OS, managing context, routing tasks to specialized agents via MCP (Model Context Protocol), and handling system resources.
When to Use This Skill
System Internal: This is primarily a background skill for routing.
When initializing the Biomedical OS environment.
When managing state across multiple agent interactions.
Core Capabilities
Task Routing: Dispatches user queries to the correct specialist agent.
Context Management: Maintains long-term memory and session state.
MCP Server: Exposes tools and resources via standard protocol.
Example Usage
User: "Start the BioKernel server."
Agent Action:
python3 platform/biokernel/server.py --port 8000
1---2name: biokernel3description: <!--4---5<!--6# COPYRIGHT NOTICE7# This file is part of the "Universal Biomedical Skills" project.8# Copyright (c) 2026 MD BABU MIA, PhD <md.babu.mia@mssm.edu>9# All Rights Reserved.10#11# This code is proprietary and confidential.12# Unauthorized copying of this file, via any medium is strictly prohibited.13#14# Provenance: Authenticated by MD BABU MIA1516-->1718---19name: biokernel20description: Biomedical OS Core & MCP Server21keywords:22 - kernel23 - os24 - mcp25 - api26 - system27measurable_outcome: Routes 100% of API requests to correct sub-agent with <200ms latency.28license: MIT29metadata:30 author: Biomedical OS Team31 version: "1.0.0"32compatibility:33 - system: Python 3.10+34allowed-tools:35 - run_shell_command36 - read_file37---3839# BioKernel4041The BioKernel is the central orchestration layer of the Biomedical OS, managing context, routing tasks to specialized agents via MCP (Model Context Protocol), and handling system resources.4243## When to Use This Skill4445* **System Internal**: This is primarily a background skill for routing.46* When initializing the Biomedical OS environment.47* When managing state across multiple agent interactions.4849## Core Capabilities50511. **Task Routing**: Dispatches user queries to the correct specialist agent.522. **Context Management**: Maintains long-term memory and session state.533. **MCP Server**: Exposes tools and resources via standard protocol.5455## Example Usage5657**User**: "Start the BioKernel server."5859**Agent Action**:60```bash61python3 platform/biokernel/server.py --port 800062```636465<!-- AUTHOR_SIGNATURE: 9a7f3c2e-MD-BABU-MIA-2026-MSSM-SECURE -->
Run npx skillmds@latest add biotender-max/biokernel in your terminal (requires Node.js), paste this page's agent-chat prompt into Claude, Cursor, or any MCP-connected agent, or download the SKILL.md file and copy it into your agent's skills directory.
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BioTender-max (@biotender-max) published this skill. Their other Agent Skills are listed on their SkillMD profile.
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