How do I install the Compbioagent Explorer skill?

Run npx skillmds@latest add biotender-max/compbioagent-explorer in your terminal (requires Node.js), paste this page's agent-chat prompt into Claude, Cursor, or any MCP-connected agent, or download the SKILL.md file and copy it into your agent's skills directory.

What does the Compbioagent Explorer skill do?

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Is Compbioagent Explorer safe to use?

This skill has not completed SkillMD's automated safety review yet. SkillMD never runs a skill's scripts for you; review the SKILL.md before installing.

Which AI agents work with Compbioagent Explorer?

This skill is tagged as working with Claude Code, Claude.ai, OpenAI Codex. SKILL.md is an open format, so most agents that read a skills directory can load it too.

Is Compbioagent Explorer free to use?

Yes. Installing skills from SkillMD is free, and the skill stays under its author's original license.

Who published Compbioagent Explorer?

BioTender-max (@biotender-max) published this skill. Their other Agent Skills are listed on their SkillMD profile.

Compbioagent Explorer by biotender-max

Name: Compbioagent Explorer
Author: BioTender-max

File contents

name: compbioagent-explorer description: scRNA-seq Explorer keywords: - single-cell - visualization - web-app - cellxgene - exploration measurable_outcome: Launch a local web instance for interactive scRNA-seq exploration and generate 3+ custom visualizations per session. license: MIT metadata: author: CompBioAgent Team version: "1.0.0" compatibility: - system: Python 3.9+ allowed-tools: - run_shell_command - web_fetch

CompBioAgent (Single-Cell Explorer)

An LLM-powered web application for single-cell RNA-seq data exploration, integrating with CellDepot and Cellxgene VIP.

When to Use

Interactive Exploration: When you need to visually explore a dataset without writing code.
Hypothesis Generation: Quickly checking expression of specific markers across clusters.
Sharing: Presenting data to non-computational collaborators.

Core Capabilities

Natural Language Querying: "Show me the expression of TP53 in the B-cell cluster."
Cellxgene Integration: Leverages robust visualization tools.
Data Integration: Connects with CellDepot for dataset retrieval.

Workflow

Setup: pip install compbioagent.
Launch: compbioagent start --data ./data.h5ad.
Interact: Open the local URL (e.g., http://localhost:8050) and chat with the agent to generate plots.

Example Usage

User: "Launch the explorer for my kidney dataset."

Agent Action:

compbioagent launch --port 8080 --data ./kidney_atlas.h5ad

---name: compbioagent-explorerdescription: ---name: compbioagent-explorerdescription: scRNA-seq Explorerkeywords: - single-cell - visualization - web-app - cellxgene - explorationmeasurable_outcome: Launch a local web instance for interactive scRNA-seq exploration and generate 3+ custom visualizations per session.license: MITmetadata: author: CompBioAgent Team version: "1.0.0"compatibility: - system: Python 3.9+allowed-tools: - run_shell_command - web_fetch---# CompBioAgent (Single-Cell Explorer)An LLM-powered web application for single-cell RNA-seq data exploration, integrating with CellDepot and Cellxgene VIP.## When to Use* **Interactive Exploration**: When you need to visually explore a dataset without writing code.* **Hypothesis Generation**: Quickly checking expression of specific markers across clusters.* **Sharing**: Presenting data to non-computational collaborators.## Core Capabilities1. **Natural Language Querying**: "Show me the expression of TP53 in the B-cell cluster."2. **Cellxgene Integration**: Leverages robust visualization tools.3. **Data Integration**: Connects with CellDepot for dataset retrieval.## Workflow1. **Setup**: `pip install compbioagent`.2. **Launch**: `compbioagent start --data ./data.h5ad`.3. **Interact**: Open the local URL (e.g., http://localhost:8050) and chat with the agent to generate plots.## Example Usage**User**: "Launch the explorer for my kidney dataset."**Agent Action**:```bashcompbioagent launch --port 8080 --data ./kidney_atlas.h5ad```

Frequently asked questions

Compbioagent Explorer