Paper Source Trace

Paper Source Trace

Paper Source Trace turns one target paper into grounded, claim-centered source-tracing artifacts. It keeps one canonical skill name, paper-source-trace.

Invoke it through natural language or /paper-source-trace.

Language Routing

• Use SKILL.zh.md when the user mainly writes in Chinese or explicitly requests Chinese output.
• Use this SKILL.md for all other requests.
• Keep json/graph/citation_graph.json keys, intent labels, relation types, source roles, and parameter names in English in both workflows.

English Workflow

Standard Artifacts

Produce these artifacts when evidence and filesystem access allow:

• analysis.md: human-readable report.
• json/graph/citation_graph.json: canonical machine-readable graph following references/schema.md.
• citation_map.svg: static citation map when SVG generation is possible.
• citation_map.html: single-file interactive graph when graph data is available.
• citation_map_chain.svg: chain-style source trace SVG only when svg: both.
• citation_map_spec.md: only when SVG generation has caveats or fails.

Default output directory:

outputs/paper-source-trace/<safe-paper-stem>/

Preferred layout:

analysis.md
citation_map.svg
citation_map.html
citation_map_chain.svg          # only when svg is both
citation_map_spec.md            # only when SVG generation has caveats or fails
json/graph/citation_graph.json
json/aminer/*.json              # only when AMiner raw results are saved
json/extraction/*.json          # only when structured intermediates are saved

Legacy compatibility: if the user writes mode: current, treat it as svg: radial; mode: example as svg: chain; and mode: all as svg: both. If svg and mode are both supplied and conflict, ask the user to confirm the intended SVG output. hybrid, interactive graph, or expandable knowledge graph means the user wants the standard citation_map.html; it is not an SVG mode and does not change the SVG choice.

Startup Confirmation

Before reading the paper, extracting citations, checking AMINER_API_KEY, calling AMiner, or generating SVG, ask the user to confirm:

• SVG output: radial, chain, or both.
• AMiner enrichment: on or off.

If the user already supplied one or both values, restate them as provisional and still ask for final confirmation. Stop until the user answers.

If interactive confirmation is genuinely impossible, use the recommended defaults: svg: both and aminer: on. Still follow the high-cost confirmation rule before any AMiner call estimated at ¥5 or more; if AMINER_API_KEY is missing, skip AMiner enrichment and continue local analysis.

Core Rules

1. Use only supplied paper text, citation contexts, reference entries, user notes, or explicitly requested AMiner results as evidence.
2. Do not infer citation intent from domain memory alone.
3. AMiner enrichment is explicit opt-in only. Do not check AMINER_API_KEY unless requested.
4. AMiner may enrich IDs, URLs, candidate reference matches, and external citation relationships, but it cannot replace local citation contexts or prove intent/source traces by itself.
5. Preserve uncertainty; lower confidence when citation context, reference matching, or source role evidence is incomplete.
6. Keep citation_sentence and context in the source language of the target paper. They are original evidence anchors, not localized explanations.
7. Use the user's output language for evidence, summary, notes, Markdown report text, and visible SVG/HTML UI.
8. If output files can be written, do not stop at a chat-only summary.

AMiner Enrichment

When confirmation is possible, treat AMiner as off unless the user confirms aminer: on or explicitly writes enhance with AMiner, use AMiner metadata, complete paper_id, or trace AMiner citation relationships. When confirmation is genuinely impossible, the recommended fallback is aminer: on.

When enabled:

1. Check only whether AMINER_API_KEY exists; never print the token.
2. If missing, continue local analysis and record that enrichment was skipped.
3. Use the shortest viable chain: paper_search or paper_search_pro, paper_detail, paper_relation, and paper_info.
4. Output a cost summary for all planned or completed AMiner calls.
5. If estimated cost is ¥5 or more, ask for explicit confirmation before paid calls.
6. Record enrichment metadata under metadata.aminer_enrichment in json/graph/citation_graph.json.

Intent Labels

Use only these labels unless the user explicitly extends the taxonomy:

background, problem, core-method, supporting-method, dataset, metric, baseline, tool-resource, theory, result-evidence, limitation, future-work.

Execution Steps

1. Ask the startup confirmation question and wait for the answer.
2. Resolve input evidence and output directory.
3. Extract reliable paper text, reference entries, and citation contexts.
4. Read references/evidence_protocol.md before important classification or source tracing.
5. Classify citations with the allowed intent labels.
6. Extract key target-paper claims or contributions when supported by text.
7. Build source_traces[] by linking claims to local citation contexts, cited-source roles, and evidence steps.
8. Extract entities and relations that explain the target paper.
9. If AMiner is enabled, enrich metadata without replacing local evidence.
10. Write json/graph/citation_graph.json before visual artifacts.
11. Write analysis.md; use references/analysis_template.md only for explicit template or fixed-format requests.
12. Generate citation_map.html and the confirmed SVG output with one renderer command: scripts/render_html.py --graph <output>/json/graph/citation_graph.json --output <output>/citation_map.html --svg <radial|chain|both> --language auto.
13. Do not hand-write ad hoc SVG or HTML; both static SVG modes and the HTML radial / chain views must share the renderer layout, colors, language pack, text wrapping, node priority, and edge rules.
14. Validate artifacts before the final reply.

Reference Files

• references/schema.md: canonical schema and JSON example.
• references/evidence_protocol.md: evidence and uncertainty rules.
• references/prompts.md: English and Chinese extraction/review prompts.
• references/visual.md: SVG and HTML graph rules.
• references/analysis_template.md: fixed report templates for explicit template mode.
• scripts/render_html.py: standard graph renderer. Use it for citation_map.html, citation_map.svg, and citation_map_chain.svg; do not hand-write ad hoc SVG or HTML.

Quality Checks

• Every citation has intent, evidence, confidence, and either reference_id or unmatched_reference: true.
• Every intent label is in the allowed list.
• Key citations trace back to a citation sentence or local context.
• citation_sentence and context preserve the target paper's original language; only explanation fields are localized.
• Every entity is supported by at least one citation.
• Every source trace is grounded in at least one local citation context; AMiner metadata cannot be the sole support.
• Generate citation_map.html and SVG maps with scripts/render_html.py after json/graph/citation_graph.json is written. HTML and SVG must use one visible language, the same canonical group labels, the same node ranking, and the same reduced-edge layout strategy.
• Static SVG should use only useful main edges, summarize dense groups with +N, and avoid citation-to-citation cross-links or AMiner-only relation lines.
• json/graph/citation_graph.json remains complete even if Markdown, SVG, or HTML has caveats.