Lisa Atlassian Access

Atlassian Access: $ARGUMENTS

Single chokepoint for all Atlassian operations. Routes each op to a substrate, enforces connection match, returns structured result. Caller skills (jira-*, confluence-*) MUST go through this — they MUST NOT invoke acli directly, call Atlassian MCP tools directly, or curl the Atlassian REST API themselves.

Invocation contract

The caller passes one operation plus its arguments. Operations are listed in the dispatch table below. The skill returns either the structured operation result (JSON when the substrate provides it) or a clear error.

operation: read-ticket  key: PROJ-123
operation: write-ticket payload: {...}
operation: transition   key: PROJ-123  to: "In Review"
operation: comment      key: PROJ-123  body: "..."
operation: search-issues jql: "project = SE AND status = Open"
operation: read-page    id: 12345
operation: write-page   payload: {...}

Workflow

Step 1 — Substrate selection (per operation)

Read config:

SITE=$(jq -r '.atlassian.site // empty' .lisa.config.json)
CLOUDID=$(jq -r '.atlassian.cloudId // empty' .lisa.config.json)
EMAIL=$(jq -r '.atlassian.email // empty' .lisa.config.local.json 2>/dev/null)
[ -z "$CLOUDID" ] && { echo "Error: atlassian.cloudId not set. Run /lisa:setup:atlassian." >&2; exit 1; }

Probe each tier in order; the first that's ready AND identity-matches is the substrate for this operation. Identity-match is verified before any operation; substrates authenticated as a different Atlassian account are switched to the configured profile when one exists, then skipped only if the switch fails or re-verification still mismatches.

substrate=""

# Tier 1: acli for reads and non-write operations only.
#
# Do not choose acli for JIRA writes when curl/token auth is available. acli stores
# one machine-global active account and workitem writes cannot pin a cloudId per
# invocation, so switch-then-write is a TOCTOU risk in multi-account or concurrent
# sessions. Write operations prefer the cloudId-scoped REST URL below.
if [ "$OP_KIND" != "jira-write" ] && command -v acli >/dev/null 2>&1 && acli auth status >/dev/null 2>&1; then
  current_site=$(acli auth status 2>/dev/null | awk '/^  Site:/{print $2}')
  if [ "$current_site" != "$SITE" ]; then
    # acli installed but pointing at a different site. Try switching profiles.
    acli auth switch --site "$SITE" ${EMAIL:+--email "$EMAIL"} >/dev/null 2>&1 || true
    current_site=$(acli auth status 2>/dev/null | awk '/^  Site:/{print $2}')
  fi
  if [ "$current_site" = "$SITE" ]; then
    substrate="acli"
  fi
fi

# Tier 2: Atlassian MCP (if acli not ready OR the operation isn't acli-covered)
# $OP_REQUIRES is a conceptual variable set by the dispatch table to "non-acli" for
# operations that have no acli adapter (e.g. read-page-descendants). It is not a real
# shell variable initialized here — the condition is illustrative pseudo-code.
if [ -z "$substrate" ] || [ "$OP_REQUIRES" = "non-acli" ]; then
  # Probe via mcp__plugin_atlassian_atlassian__getAccessibleAtlassianResources.
  # (Pseudo-code; actual call is the MCP tool invocation, not a bash command.)
  # If the MCP returns a list and $CLOUDID is in it, MCP is identity-matched.
  # If the MCP is unauthenticated or $CLOUDID is NOT in the list, MCP is skipped.
  if mcp_atlassian_authenticated_and_matches_cloudid "$CLOUDID"; then
    : ${substrate:=mcp}
    # Mark MCP as available even if acli already won tier 1 — used for ops acli can't do.
    mcp_available=true
  fi
fi

# Tier 3: curl + API token (headless / multi-account / scoped-token path)
read_atlassian_token() {
  local email="$1"
  [ -n "$ATLASSIAN_API_TOKEN" ] && { echo "$ATLASSIAN_API_TOKEN"; return; }
  local slug=$(echo "$email" | tr '[:upper:]@.' '[:lower:]__')
  local varname="ATLASSIAN_API_TOKEN_${slug}"
  [ -n "${!varname}" ] && { echo "${!varname}"; return; }
  case "$(uname -s)" in
    Darwin)  security find-generic-password -s lisa-atlassian -a "$email" -w 2>/dev/null ;;
    Linux)   command -v secret-tool >/dev/null && secret-tool lookup service lisa-atlassian account "$email" 2>/dev/null ;;
    MINGW*|MSYS*|CYGWIN*)
      # `cmdkey /generic ... /pass:` stores the secret in Windows Credential Manager, but
      # `cmdkey /list` never prints stored passwords (by design). Read the CredentialBlob
      # back via the Win32 CredRead API through PowerShell; pass the target name via an env
      # var to dodge nested quoting, and strip the CRLF powershell.exe appends.
      LISA_CRED_TARGET="lisa-atlassian-${email}" powershell.exe -NoProfile -NonInteractive -Command '
Add-Type -TypeDefinition @"
using System;
using System.Runtime.InteropServices;
public static class LisaCred {
  [StructLayout(LayoutKind.Sequential)]
  private struct CREDENTIAL {
    public int Flags; public int Type; public IntPtr TargetName; public IntPtr Comment;
    public System.Runtime.InteropServices.ComTypes.FILETIME LastWritten;
    public int CredentialBlobSize; public IntPtr CredentialBlob; public int Persist;
    public int AttributeCount; public IntPtr Attributes; public IntPtr TargetAlias; public IntPtr UserName;
  }
  [DllImport("advapi32.dll", CharSet=CharSet.Unicode, SetLastError=true)]
  private static extern bool CredRead(string target, int type, int flags, out IntPtr credential);
  [DllImport("advapi32.dll")] private static extern void CredFree(IntPtr cred);
  public static string Read(string target) {
    IntPtr p;
    if (!CredRead(target, 1, 0, out p)) { return null; }
    try {
      CREDENTIAL c = (CREDENTIAL)Marshal.PtrToStructure(p, typeof(CREDENTIAL));
      if (c.CredentialBlobSize == 0) { return String.Empty; }
      return Marshal.PtrToStringUni(c.CredentialBlob, c.CredentialBlobSize / 2);
    } finally { CredFree(p); }
  }
}
"@
[LisaCred]::Read($env:LISA_CRED_TARGET)' 2>/dev/null | tr -d '\r' ;;
  esac
}
TOKEN=$(read_atlassian_token "$EMAIL")
[ -n "$TOKEN" ] && curl_available=true && {
  if [ "$OP_KIND" = "jira-write" ]; then
    substrate="curl"
  else
    : ${substrate:=curl}
  fi
}

# Fail loudly with actionable remediation if nothing works.
if [ -z "$substrate" ]; then
  # Detect plugin enablement state for the suggestion.
  plugin_enabled_global=$(jq -r '.enabledPlugins["atlassian@claude-plugins-official"] // false' ~/.claude/settings.json 2>/dev/null || echo "false")
  plugin_enabled_project=$(jq -r '.enabledPlugins["atlassian@claude-plugins-official"] // false' .claude/settings.json 2>/dev/null || echo "false")
  plugin_enabled_local=$(jq -r '.enabledPlugins["atlassian@claude-plugins-official"] // false' .claude/settings.local.json 2>/dev/null || echo "false")

  cat >&2 <<EOF
Error: no Atlassian access substrate available for site $SITE.

Attempted:
  acli   — $(command -v acli >/dev/null && echo "installed but identity mismatch or unauthenticated" || echo "not installed")
  MCP    — $([ "$plugin_enabled_global" = "true" ] || [ "$plugin_enabled_project" = "true" ] || [ "$plugin_enabled_local" = "true" ] && echo "plugin enabled but not authenticated or cloudId $CLOUDID not in accessible resources" || echo "plugin not enabled in any settings.json scope")
  curl   — no ATLASSIAN_API_TOKEN found for $EMAIL (env, slug-suffixed env, or keychain)

Remediation paths (pick one):

1. Install the Atlassian MCP plugin (local scope — per-developer, gitignored).
   This is the simplest path for single-account developers.

   Run in your terminal:

     jq '.enabledPlugins["atlassian@claude-plugins-official"] = true' \\
       .claude/settings.local.json 2>/dev/null > /tmp/s && \\
       mv /tmp/s .claude/settings.local.json || \\
       echo '{"enabledPlugins":{"atlassian@claude-plugins-official":true}}' > .claude/settings.local.json

   Then restart Claude Code (or run /restart-mcp) to load the plugin, and
   invoke 'mcp__plugin_atlassian_atlassian__authenticate' to complete OAuth.

2. Install acli and authenticate (best for multi-account developers).

     brew tap atlassian/homebrew-acli && brew install acli
     acli auth login   # OAuth as the account matching $EMAIL

3. Provision an API token (headless / CI / scoped-token environments).

     Run /lisa:setup:atlassian — guided flow with clipboard-piped keychain store.

EOF
  exit 1
fi

Operation dispatch then uses $substrate for the primary route. If the operation has no acli adapter and $substrate=acli, fall through to $mcp_available then $curl_available for the actual call. The fall-through stops at the first available tier that can perform the operation.

Step 2 — Connection-match check

The active connection MUST point at the cloudId/site declared in .lisa.config.json. Step 1's substrate selection already tries to switch mismatched acli profiles and verifies the result before selection. This step repeats the assertion before any operation runs — defensive in case the substrate state changed since selection.

Read configured site:

cloudid=$(jq -r '.atlassian.cloudId // empty' .lisa.config.json)
site=$(jq -r '.atlassian.site // empty' .lisa.config.json)   # optional human-readable site URL
email=$(jq -r '.atlassian.email // empty' .lisa.config.json) # optional, for multi-account disambiguation

if [ -z "$cloudid" ]; then
  echo "Error: atlassian.cloudId not set in .lisa.config.json. Run /lisa:setup:atlassian." >&2
  exit 1
fi

CLI mode check:

# Compare active acli profile against config.
current=$(acli auth status --json 2>/dev/null)
current_site=$(echo "$current" | jq -r '.site // empty')
current_email=$(echo "$current" | jq -r '.email // empty')

if [ -n "$site" ] && [ "$current_site" != "$site" ]; then
  # Profile mismatch — switch, then re-verify. Do not trust the switch exit
  # status alone because acli's active account is machine-global state.
  acli auth switch --site "$site" ${email:+--email "$email"}
  current=$(acli auth status --json 2>/dev/null)
  current_site=$(echo "$current" | jq -r '.site // empty')
  current_email=$(echo "$current" | jq -r '.email // empty')
fi

if [ -n "$site" ] && [ "$current_site" != "$site" ]; then
  echo "Error: acli active site is '$current_site', but .lisa.config.json requires '$site'. Run /lisa:setup:atlassian to add or repair the matching profile." >&2
  exit 1
fi

if [ -n "$email" ] && [ -n "$current_email" ] && [ "$current_email" != "$email" ]; then
  echo "Error: acli active account is '$current_email', but .lisa.config.json requires '$email'. Run /lisa:setup:atlassian to add or repair the matching profile." >&2
  exit 1
fi

If acli auth switch fails because no matching profile exists, surface the error verbatim and instruct the caller to run /lisa:setup:atlassian to add the profile.

curl mode check (when the chosen op routes to curl):

# Validate the active ATLASSIAN_API_TOKEN points at the configured account by
# hitting /rest/api/3/myself and comparing emailAddress.
AUTH=$(printf '%s:%s' "$email" "$ATLASSIAN_API_TOKEN" | base64)
myself=$(curl -s -H "Authorization: Basic $AUTH" \
  "https://${site}/rest/api/3/myself")
me_email=$(echo "$myself" | jq -r '.emailAddress // empty')

if [ -z "$me_email" ]; then
  echo "Error: ATLASSIAN_API_TOKEN failed authentication against $site. Run /lisa:setup:atlassian to re-issue." >&2
  exit 1
fi
if [ "$me_email" != "$email" ]; then
  echo "Error: ATLASSIAN_API_TOKEN belongs to '$me_email', but .lisa.config.local.json declares '$email'. Multi-account misconfiguration." >&2
  exit 1
fi

If validation fails, never silently proceed — abort and instruct the user to fix env.

Step 2.5 — JIRA description normalization

For write-ticket create/edit operations, normalize any Lisa-authored JIRA description before dispatching to a substrate. JIRA Cloud stores descriptions as Atlassian Document Format (ADF). acli does not convert Markdown or JIRA wiki markup to ADF; if plain text is passed to --description / --description-file, JIRA stores one literal paragraph containing strings like ## Repository or h2. Repository. That breaks jira-validate-ticket heading checks and renders poorly for humans.

Use the shared converter at scripts/markdown-to-adf.mjs from this skill for every write path that carries a string description:

normalize_jira_description_payload() {
  local payload_file="$1"
  local converter="$(dirname "$0")/scripts/markdown-to-adf.mjs"

  jq -e '.fields.description | type == "string"' "$payload_file" >/dev/null 2>&1 || return 0

  local markdown_file adf_file
  markdown_file=$(mktemp)
  adf_file=$(mktemp)
  jq -r '.fields.description' "$payload_file" > "$markdown_file"
  node "$converter" < "$markdown_file" > "$adf_file"
  jq --slurpfile adf "$adf_file" '.fields.description = $adf[0]' "$payload_file" > "$payload_file.tmp"
  mv "$payload_file.tmp" "$payload_file"
}

Rules:

• Convert Markdown headings (# / ## / ###) and JIRA wiki headings (h1. / h2. / h3.) to ADF heading nodes.
• Convert fenced code blocks, bullet lists, numbered lists, paragraphs, inline code, and bold text to their ADF equivalents.
• Run this for acli, curl, and MCP writes unless the caller already supplied an ADF object (description.type == "doc"). Do not double-convert existing ADF.
• For acli, pass the normalized JSON through --from-json; do not use --description or --description-file with raw Markdown/wiki text.

Step 3 — Operation dispatch

Substrate column meanings:

• acli: routes through acli. Preferred when available and identity-matched.
• MCP: routes through the Atlassian MCP. Preferred when acli can't do the op and the MCP is identity-matched (cloudId in getAccessibleAtlassianResources).
• curl: routes through curl + Basic auth + ATLASSIAN_API_TOKEN. Used when neither acli nor MCP is available.
• Multiple cells filled means tier ordering applies — try acli, then MCP, then curl, taking the first that has an adapter for the op AND is identity-matched.
• One cell means only that substrate can perform the op.

<SITE> = .atlassian.site (e.g. propswap.atlassian.net). <CLOUDID> = .atlassian.cloudId. <AUTH> = Basic $(printf '%s:%s' "$email" "$ATLASSIAN_API_TOKEN" | base64). JIRA curl writes use the cloudId-bound Atlassian gateway https://api.atlassian.com/ex/jira/<CLOUDID>/rest/api/3/...; JIRA curl reads may use either that gateway or https://<SITE>/rest/api/3/... after the token account check. Confluence uses /wiki/rest/api/... (v1) or /api/v2/... (v2).

Confluence v1 vs v2: every Confluence curl path above uses v1 (/wiki/rest/api/...). v1 is deprecated by Atlassian but as of writing remains functional for API-token Basic auth. The v2 API (/api/v2/...) requires granular OAuth scopes that aren't issued to Basic-auth API tokens consistently — so v1 is the safer path for now. When Atlassian fully retires v1, this table must move to v2 (the dispatch is the only thing that changes; the substrate-selection logic is unaffected).

acli flag note: acli's --output flag does not exist; the correct flag is --json. List commands require --paginate or --limit (no implicit fetch-all). acli jira workitem view defaults to a restricted field set (key,issuetype,summary,status,assignee,description), so read-ticket MUST pass --fields '*all' or an explicit equivalent that includes every downstream dependency: parent, subtasks, issue links, components, labels, priority, status, issue type, summary, description, fix versions, affected versions, attachments, comments, estimates, sprint/story-point fields, and project-required custom fields. Never rely on the default view fields; they hide parent/components/labels and corrupt leaf-only, relationship-search, build-ready, and required-custom-field gates. Several documented adapters are nominal — verify against acli <subcmd> --help before relying on them. When acli's adapter is broken or missing for a specific op, fall through to MCP (if identity-matched) then curl per the tier ordering.

JIRA write tenant-safety rule: create, edit, transition, comment, and link are write operations. They MUST prefer the curl adapter whenever token auth is available because the URL includes <CLOUDID> and cannot be redirected by the user-global acli active account. If the flow must fall back to acli for a write, it is a guarded fallback, not the normal path:

1. Switch and assert the active acli auth status site/email matches config immediately before the write.
2. Execute the write.
3. Read the affected issue(s) immediately after the write.
4. Assert each response belongs to the configured tenant by checking one of: response self URL host equals <SITE>, response self URL path includes /ex/jira/<CLOUDID>/, or response metadata reports <CLOUDID>.
5. If the assertion fails, stop, report a cross-tenant write hazard, and best-effort roll back the write when there is a safe reversal: delete a newly created issue, remove a newly created comment/link, or revert a reversible field edit. Never continue as if the write succeeded.

Do not treat a successful acli auth switch or pre-write auth status as sufficient for tenant safety. Another process can mutate the global acli active account between the check and the write.

acli link-create direction is invertible — flags and verification: acli has no --inward/--outward flags; the real flags are --in and --out (confirm with acli jira workitem link create --help). For a Blocks link, --in is the blocker and --out is the blocked issue, i.e. --in <X> --out <Y> --type Blocks resolves to "X blocks Y" (Y is blocked by X). The lisa op link from:<K> to:<K2> type:<T> means "K ⟨T⟩ K2", so the blocker from maps to --in and the blocked to maps to --out (as in the adapter above). The acli success banner only echoes the --in/--out values you passed — it does NOT confirm the resolved semantic direction, so a reversed link reports success and looks fine. After every link write, re-read the affected issues via read-ticket (which already requests --fields '*all') and confirm issuelinks[].type + inwardIssue/outwardIssue resolve to the intended blocks / is blocked by direction. Skipping this can silently reverse an entire epic's dependency graph — e.g. cutover tickets recorded as blocking the prerequisites that should block them.

JIRA terminal-resolution note: when a caller marks a transition as terminal per leaf-only-lifecycle, the substrate must not treat a Done-named status as sufficient by name alone. After transition key:<K> to:<S>, re-read the issue and verify statusCategory = Done; if the workflow requires a resolution, verify resolution is set. If the transition screen requires a resolution value, pass the configured default resolution when available; otherwise return a setup error so the build-intake skill can report the workflow gap instead of silently leaving an unresolved ticket in a Done-looking status.

Operations not in this table are unsupported — add an adapter row before using them. Adapters MUST return a structured response (parse acli's --json; jq-process curl's raw JSON).

Payload conventions

• write-ticket payload: full JSON spec when creating; partial JSON (only changed fields, with key to identify) when editing. Adapters detect create vs edit by presence of key.
• write-page payload: supports a label-only mutation form — { "id": "<I>", "labels": { "add": [...], "remove": [...] } } — so callers transitioning PRD lifecycle labels do not need to resend the page body. Full create/update payloads also accepted.
• comment-page kind: inline requires anchor (the highlighted text the comment attaches to). kind: footer ignores anchor.

Step 4 — Return result

Emit either:

• The structured operation result (JSON object), wrapped in a <result> block for caller parsing, OR
• An error message prefixed with Error: and a remediation hint. Exit non-zero. Include the HTTP status code (curl) or acli exit code so callers can route on it.

Do not paraphrase substrate output beyond JSON normalization.

Invariants

• Caller skills never invoke acli or curl against Atlassian directly. They only invoke this skill.
• Substrate is decided once per skill invocation and never switches mid-operation.
• Connection match is mandatory. Operations that bypass it (because "the user obviously meant the configured site") are forbidden.
• Profile mutations (acli auth switch) are allowed when acli is the active substrate. The curl substrate never mutates the token — if ATLASSIAN_API_TOKEN doesn't match the configured account, fail loud rather than silently substituting.
• JIRA writes are cloudId-bound by default. acli write adapters are fallback-only and must perform post-write tenant assertions plus safe rollback on mismatch.
• .lisa.config.local.json overrides .lisa.config.json per-key — the same precedence rule as every other consumer of project config.

Headless behavior

In a headless / non-interactive context (no TTY, CI=true, or -p mode), the MCP tier is unavailable (its OAuth flow needs a browser). The substrate ladder collapses to: acli (if pre-authenticated, e.g., a CI image baked with a service-account token) → curl + ATLASSIAN_API_TOKEN. Never block on interactive prompts. If both fail readiness checks, exit non-zero with a deterministic error.