Codex compatibility note:
- Invoke repository skills with
$skill-name in Codex; this mirrored copy rewrites legacy Claude /skill-name references.
- Task tracker mandate: BEFORE executing any workflow or skill step, create/update task tracking for all steps and keep it synchronized as progress changes.
- User-question prompts mean to ask the user directly in Codex.
- Ignore Claude-specific mode-switch instructions when they appear.
- Strict execution contract: when a user explicitly invokes a skill, execute that skill protocol as written.
- Subagent authorization: when a skill is user-invoked or AI-detected and its protocol requires subagents, that skill activation authorizes use of the required
spawn_agent subagent(s) for that task.
- Do not skip, reorder, or merge protocol steps unless the user explicitly approves the deviation first.
- For workflow skills, execute each listed child-skill step explicitly and report step-by-step evidence.
- If a required step/tool cannot run in this environment, stop and ask the user before adapting.
Codex Project-Reference Loading (No Hooks)
Codex uses static project-reference loading instead of runtime-injected project docs.
When coding, planning, debugging, testing, or reviewing, open project docs explicitly using this routing.
Always read:
docs/project-config.json (project-specific paths, commands, modules, and workflow/test settings)
docs/project-reference/docs-index-reference.md (routes to the full docs/project-reference/* catalog)
docs/project-reference/lessons.md (always-on guardrails and anti-patterns)
Missing/stale context route: If docs/project-config.json, the docs index, lessons.md, CLAUDE.md, AGENTS.md, or any task-required reference doc is missing or stale, auto-run $project-init or the narrow setup route ($project-config, $docs-init, $scan-all, $scan --target=<key>, $claude-md-init) before ordinary project-specific work. If Codex mirrors or AGENTS.md are missing/stale, ask the user to run $sync-codex; do not auto-run it.
Situation-based docs:
- Project structure/architecture/tech-stack/deployment/setup (any layer — backend, frontend, or infra):
project-structure-reference.md
- Backend/CQRS/API/domain/entity changes:
backend-patterns-reference.md, domain-entities-reference.md
- Frontend/UI/styling/design-system:
frontend-patterns-reference.md, scss-styling-guide.md, design-system/README.md
- Spec authoring,
docs/specs/ pathing, or TC format: feature-spec-reference.md, spec-system-reference.md, spec-principles.md
- Behavior/public-contract changes or spec-test-code sync:
workflow-spec-test-code-cycle-reference.md plus the spec docs above
- Derived spec indexes/ERDs/reimplementation guides:
spec-system-reference.md and source Feature Specs under docs/specs/
- Integration test implementation/review:
integration-test-reference.md
- E2E test implementation/review:
e2e-test-reference.md
- Code review/audit work:
code-review-rules.md plus domain docs above based on changed files
Do not read all docs blindly. Start from docs-index-reference.md, then open only relevant files for the task.
Quick Summary
Goal: [Code Intelligence] Build, update, or sync the code review knowledge graph. Parses codebase with Tree-sitter into a structural graph (functions, classes, imports, calls, tests) stored in SQLite. Enables blast-radius analysis and graph-powered code review. --scope selects the lifecycle operation — full (rebuild), update (working-tree changes; folds former /graph-update), sync (committed git changes + working-tree update; folds former /graph-sync) — default auto-detects from graph status.
Workflow:
- Detect — classify request scope and target artifacts.
- Execute — apply required steps with evidence-backed actions.
- Verify — confirm constraints, output quality, and completion evidence.
Key Rules:
- Scope flag (see Scope Mode): default (no flag) auto-detects via
status (full if never built, else incremental); --scope=full forces rebuild; --scope=update = uncommitted working-tree changes (CLI update, folds /graph-update); --scope=sync = committed git changes then working-tree update (CLI sync + update, folds /graph-sync).
- MUST ATTENTION keep claims evidence-based (
file:line) with confidence >80% to act.
- MUST ATTENTION keep task tracking updated as each step starts/completes.
- NEVER skip mandatory workflow or skill gates.
Prerequisites
Requires Python 3.10+ with: pip install tree-sitter tree-sitter-language-pack networkx
Scope Mode (--scope=)
--scope |
CLI verb(s) |
What it does |
Former skill |
| (none, default) |
status → build or update |
Auto-detect: full build if never built, else incremental update |
— |
full |
build --json |
Force full rebuild (ignore existing graph) |
— |
update |
update --json |
Re-parse uncommitted working-tree changes (staged/unstaged) |
/graph-update |
sync |
sync --json then update --json |
Sync committed git changes (last_synced_commit → HEAD), then working tree |
/graph-sync |
Default (no --scope) auto-detects from status. update = working-tree changes (base HEAD~1, options --base/--repo). sync = committed changes + chained working-tree update (the sync→update chain is preserved). Pick --scope FIRST (default auto-detect), then run the matching branch.
Automatic HEAD reconciliation (independent of this skill). Two hooks call the CLI sync directly, so a manual run is rarely needed just because HEAD moved:
| Hook |
Fires |
Catches |
graph-session-init |
SessionStart (startup|resume) |
Commits that landed while the session was away |
graph-prompt-sync |
UserPromptSubmit |
A git pull / checkout / merge performed MID-session — gated on a cheap git rev-parse HEAD compare, so Python spawns only when HEAD actually moved |
The graph-auto-update PostToolUse hook covers file EDITS; these two cover HEAD MOVES. Between them the graph should already be current — reach for a manual --scope=sync only to force the issue or after a rebase/force-push.
Steps
Default (auto-detect) — build or incremental update
Check availability — Run via Bash:
python .claude/scripts/code_graph status --json
- If error (Python/deps missing): show install instructions and stop
- If
last_updated is null: graph never built → proceed with full build
- If
last_updated exists: graph exists → proceed with incremental update
Build or update — Run via Bash:
- Full build:
python .claude/scripts/code_graph build --json
- Incremental:
python .claude/scripts/code_graph update --json
Report results from JSON output:
- Files parsed, nodes created, edges created
- Languages detected
- Any errors encountered
- Build type (full vs incremental)
--scope=full — force full rebuild
python .claude/scripts/code_graph build --json
Always does a complete reparse (ignores existing graph). Report: files parsed, nodes/edges created, languages, build type.
--scope=update — uncommitted working-tree changes (folds /graph-update)
python .claude/scripts/code_graph update --json
Diffs the working tree against a base commit (default HEAD~1), re-parses changed/added files, removes deleted files from the graph, then re-runs the API + implicit connectors. Options: --base <commit> (default HEAD~1), --repo <path>. Report: files updated/added/deleted, or "Working tree clean — graph already up to date".
--scope=sync — committed git changes + working tree (folds /graph-sync)
Sync committed changes via Bash:
python .claude/scripts/code_graph sync --json
Diffs last_synced_commit → HEAD, re-parses changed/added files, removes deleted files, re-runs connectors, stores new HEAD. If it reports full_rebuild_fallback (unreachable commit after rebase/force-push), a full rebuild was triggered — inform the user.
Update working tree (chained — former graph-sync step 4) via Bash:
python .claude/scripts/code_graph update --json
Report: files synced/added/modified/deleted, then working-tree update results (or "working tree clean").
Older checkout is a deliberate no-op. When HEAD is an ANCESTOR of the graph's last_synced_commit — you checked out an older branch or commit the graph already covers — sync returns {"reason": "graph_ahead_skipped"} and changes nothing: no re-parse, and last_synced_commit is NOT dragged backwards. This is intentional. git diff A..B succeeds in BOTH directions, so without the guard an older checkout would silently rewrite the graph to the older tree. Trade-off to know: while sitting on that older branch the graph describes the newer tree, so it can report symbols the checked-out code does not have; run --scope=full if you need the graph to match an older branch exactly. Diverged branches are NOT "behind" (neither commit is an ancestor of the other) and still sync normally.
sync vs update: sync detects committed changes only (last_synced_commit → HEAD; use after pull/merge/checkout). update detects working-tree changes (staged/uncommitted, mid-session). No --files flag on sync/update (auto-detected from git); there is no incremental subcommand (use update).
When to Use
- First time setting up graph for a project
- After major refactoring or branch switches
- If graph seems stale or out of sync
- Graph auto-updates via the PostToolUse hook (file edits) and auto-syncs via the SessionStart / UserPromptSubmit hooks (HEAD moves), so manual builds are rarely needed
Notes
- Graph stored at
.code-graph/graph.db (SQLite, auto-gitignored)
- Supported: Python, TypeScript, JavaScript, Vue, Go, Rust, Java, C#, Ruby, Kotlin, Swift, PHP, Solidity, C/C++
- Initial build: ~10s for 500 files. Incremental: <2s
Connectors (Auto-Run)
After build/update, graph connectors run automatically if configured in project-config.json:
- API Endpoints: Frontend HTTP calls matched to backend routes (
graphConnectors.apiEndpoints)
- Implicit Connections: Entity events, message bus, command events (
graphConnectors.implicitConnections)
See $graph-connect-api and .claude/docs/code-graph-mechanism.md for details.
DB Performance Indexes
The graph database includes optimized indexes created automatically on first build:
idx_nodes_name — fast node name lookups for search
idx_edges_kind_source — composite index for filtered edge queries (kind + source)
idx_edges_kind_target — composite index for filtered edge queries (kind + target)
These indexes are defined in the init schema and auto-create in any new project on first graph build.
Auto-Connect After Build
After building, the CLI automatically runs:
- API connector — detects frontend HTTP calls matching backend route definitions
- Implicit connector — detects behavioral relationships (entity events, bus messages, command events) based on rules in
project-config.json → graphConnectors.implicitConnections[]
This creates edges for MESSAGE_BUS, TRIGGERS_EVENT, PRODUCES_EVENT, TRIGGERS_COMMAND_EVENT, and API_ENDPOINT — enabling full system flow tracing via the trace command.
Describe (AI-Friendly Command Reference)
Run python .claude/scripts/code_graph describe --json to get MCP-style structured descriptions of all available CLI commands, their parameters, and usage. Useful for AI agents to discover graph capabilities programmatically.
Valid CLI Subcommands
build, update, status, blast-radius, query, connections, trace, search, find-path, batch-query, sync, export, export-mermaid, connect-api, connect-implicit, review-context, describe
migrate-paths is also available to convert existing databases built with absolute file paths into repo-relative storage without reparsing the repository.
Common Mistakes (DO NOT USE)
| Invalid Command |
Correct Alternative |
incremental |
update --json (incremental is the default behavior of update) |
update --files <list> |
update --json (auto-detects changed files via git diff) |
build --files <list> |
build --json (always does full rebuild) |
sync --files <list> |
sync --json (auto-detects from git) |
file_summary |
connections <file> --json |
Build Graph
Build or incrementally update the persistent code knowledge graph for this repository.
AI Mistake Prevention — Failure modes to avoid on every task:
Re-read files after context changes. Context compaction, resume, or long-running work can make memory stale; verify current files before acting.
Verify generated content against source evidence. AI hallucinates APIs, names, claims, and document facts. Check the relevant source before documenting or referencing.
Check downstream references before deleting or renaming. Removing an artifact can stale docs, generated mirrors, configs, and callers; map references first.
Trace the full impact chain after edits. Changing a definition can miss derived outputs and consumers. Follow the affected chain before declaring done.
Verify ALL affected outputs, not just the first. One green check is not all green checks; validate every output surface the change can affect.
Assume existing values are intentional — ask WHY before changing OR flagging one as a defect. Before changing or reporting a constant, limit, flag, cutoff, wording, or pattern, read nearby context and history, the CALLER's ordering, and 2+ sibling call sites of the same convention. A doc stating WHAT without WHY is missing rationale, not proof of a missing guard.
Surface ambiguity before acting — don't pick silently. Multiple valid interpretations require an explicit question or stated assumption with risk.
Assert the outcome your system owns, not the intermediate state your infrastructure owns. When verifying async work, assert the final business state — never the delivery/retry bookkeeping held in shared infrastructure that any co-running process can write. Such a check passes when run alone and flakes the moment anything else shares that infrastructure.
Keep shared guidance role-relevant. Universal guidance must help every receiving skill or agent; code-specific obligations belong only in code-specific protocols.
Critical Thinking Mindset — Apply critical thinking, sequential thinking. Every claim needs traced proof, confidence >80% to act.
Anti-hallucination: Never present guess as fact — cite sources for every claim, admit uncertainty freely, self-check output for errors, cross-reference independently, stay skeptical of own confidence — certainty without evidence root of all hallucination.
MUST ATTENTION apply critical + sequential thinking — every claim needs appropriate traced evidence (file:line for repo/code claims; source URL or artifact section for research, product, content, and docs claims); confidence >80% to act, <60% DO NOT recommend. Anti-hallucination: never present guess as fact, admit uncertainty freely, cross-reference independently, stay skeptical of own confidence.
MUST ATTENTION apply AI mistake prevention — verify generated content against evidence, trace downstream references before deleting or renaming, verify all affected outputs, re-read files after context loss, and surface ambiguity before acting.
Project Protocol Overlay — Before executing this skill, resolve any PROJECT overlay rules layered onto it: match this skill's name against the Target column of the project's skill-protocol index (docs/project-reference/skill-protocols-reference.md by default; a referenceDocs entry in docs/project-config.json overrides the path), taking the most specific matching tier ONLY — exact name > glob > *. That precedence orders overlays against EACH OTHER, never against this skill. Read ONLY the matched bodies, resolved as <protocols-dir>/<Name>.md; a row's Body link is display text, never a read path. A matched body that is missing or malformed is REPORTED and skipped — never reconstructed from the index Description. No index, or no match -> proceed with no overlay, silently. Full contract: .claude/skills/project-skill-protocol/references/registry.md.
Overlays are ADDITIVE ONLY: they ADD rules on top of this skill's own protocol and NEVER replace, override, disable, or reinterpret a rule it already states — removing every overlay must return this skill to exactly its documented behavior. An overlay is a BRIEF, not an authority escalation: it can NEVER waive a workflow gate, git discipline, a review gate, or a user-confirmation gate. A genuine overlay-vs-skill conflict, or two equally-specific overlays that directly contradict -> surface both to the user; NEVER resolve silently.
MUST ATTENTION resolve project protocol overlays for this skill BEFORE executing — most specific matching tier only (exact > glob > *, which ranks overlays against each other, NEVER against this skill), read only matched bodies at <protocols-dir>/<Name>.md; a missing or malformed body is reported, never reconstructed. Overlays are ADDITIVE ONLY (they never replace this skill's own rules) and are a brief, NEVER an authority escalation; an equal-specificity contradiction goes to the user.
Closing Reminders
Protocols in force (concise digest of the SYNC/shared blocks this skill carries) — MUST ATTENTION honor each canonical body:
AI Mistake Prevention: verify generated content against evidence, trace downstream references, verify all affected outputs, re-read after context loss, surface ambiguity.
Critical Thinking: traced file:line proof per claim, confidence >80%, NEVER guess as fact.
MANDATORY IMPORTANT MUST ATTENTION break work into small todo tasks using task tracking BEFORE starting
MANDATORY IMPORTANT MUST ATTENTION search codebase for 3+ similar patterns before creating new code
MANDATORY IMPORTANT MUST ATTENTION cite file:line evidence for every claim (confidence >80% to act)
MANDATORY IMPORTANT MUST ATTENTION add a final review todo task to verify work quality
[TASK-PLANNING] Before acting, analyze task scope and systematically break it into small todo tasks and sub-tasks using task tracking.
Hookless Prompt Protocol Mirror (Auto-Synced)
Source: .claude/.ck.json + .claude/skills/shared/sync-inline-versions.md (:full blocks) + .claude/scripts/lib/hookless-prompt-protocol.cjs
[WORKFLOW-EXECUTION-PROTOCOL] [BLOCKING] Workflow Execution Protocol — MANDATORY IMPORTANT MUST CRITICAL. Do not skip for any reason.
Generic portability boundary: Reusable skills and protocol text stay project-neutral; project-specific conventions are discovered from docs/project-config.json and docs/project-reference/. Apply shared AI-SDD from shared/sdd-artifact-contract.md. Read docs/project-config.json and docs/project-reference/docs-index-reference.md, then open the project reference docs named there. For spec, test-case, behavior-change, public-contract, or docs/specs/ work, route through the local spec docs named by the docs index: feature-spec-reference.md, spec-system-reference.md, spec-principles.md, and workflow-spec-test-code-cycle-reference.md when specs/tests/code must stay synchronized. If either file or a required reference doc is missing or stale, auto-run $project-init (or the narrow lower-level route such as $project-config, $docs-init, $scan-all, or $scan --target=<key>) before ordinary project-specific work. Any supported AI tool may execute when this shared context and local docs are available.
- DETECT: If the prompt starts with an explicit slash skill/workflow command, execute it directly. Otherwise match the prompt against the workflow catalog and skill list.
- ANALYZE: Choose the best option: execute directly, invoke a skill, activate a standard workflow, or compose a custom step combination.
- AUTO-SELECT: Pick the best option yourself. Do not ask the user to choose between direct execution, skill, standard workflow, or custom workflow.
- ACTIVATE: For a selected workflow, call
$start-workflow <workflowId>; for a selected skill, invoke that skill; for a custom workflow, sequence custom steps directly; for direct execution, proceed with the task.
- CREATE TASKS: task tracking for ALL workflow/skill/custom steps before execution when the selected path has multiple steps.
- PARALLELIZE: Before executing the task list, tag each task
PAR (independent inputs + write set disjoint from every other PAR task) or SEQ (name the blocking dependency), group PAR tasks into waves, declare the wave plan, and spawn each wave's sub-agents in ONE message — all-return barrier per wave, fan-out one level deep unless a sub-agent's own definition authorizes further fan-out. Sequential-by-default is a defect when tasks are independent; do not parallelize shared write targets, output-consuming tasks, trivial single-file work, ordering a skill or workflow explicitly fixes, or user-approval gates.
- EXECUTE: Advance per the Workflow Step Advancement & Parallel Phases rule in your context instructions — model-driven; a sub-agent completion advances a step identically to an inline call; a parallel-phase group is an all-return barrier (advance only after ALL members return, never serialize it)
Shared AI-SDD Protocol Markers
Source: .claude/skills/shared/sync-inline-versions.md
SYNC:ai-sdd-artifact-contract
AI-SDD Artifact Contract — Shared spec-driven development rules stay portable and source-owned.
- Keep reusable AI-SDD principles in
.claude; put repository-specific paths, commands, owners, products, and formats in project config/reference docs.
- Preserve cycle:
spec -> plan -> tasks -> implement -> verify -> update spec/docs.
- Trace every requirement or invariant through decision, task, TC/test, source evidence, and docs/spec update.
- Treat code-to-spec extraction as reference-only until accepted by the canonical spec owner.
- Any supported AI tool may plan, implement, review, or verify with synced context; using multiple tools is optional.
- Update
.claude source first, then sync generated mirrors; do not manually edit .agents, .codex, or AGENTS.md. — why: mirrors are generated artifacts; hand-edits are overwritten on the next sync
- If
docs/project-config.json, root instruction files, or a required project-reference doc is missing or stale, auto-run $project-init or the narrow lower-level route before ordinary project-specific work.
Active reference: shared/sdd-artifact-contract.md in the active skills root.
SYNC:ai-sdd-artifact-contract:reminder
- MANDATORY Apply
shared/sdd-artifact-contract.md; keep reusable AI-SDD in .claude and local rules in project docs.
- MANDATORY Code-to-spec extraction is reference-only until canonical acceptance; any supported AI tool may execute with synced context.
- MANDATORY Update
.claude source before syncing generated mirrors; do not manually edit .agents, .codex, or AGENTS.md.
- MANDATORY Missing or stale project config, root instruction files, or required reference docs route project-specific work through
$project-init or the narrow setup route automatically.
[TASK-PLANNING] [MANDATORY] BEFORE executing any workflow or skill step, create/update task tracking for all planned steps, then keep it synchronized as each step starts/completes.
[LESSON-LEARNED-REMINDER] [BLOCKING] Task Planning & Continuous Improvement — MANDATORY. Do not skip.
Break work into small tasks (task tracking) before starting. Add final task: "Analyze AI mistakes & lessons learned".
Extract lessons — ROOT CAUSE ONLY, not symptom fixes:
- Name the FAILURE MODE (reasoning/assumption failure), not symptom — "assumed API existed without reading source" not "used wrong enum value".
- Generality test: does this failure mode apply to ≥3 contexts/codebases? If not, abstract one level up.
- Write as a universal rule — strip project-specific names/paths/classes. Useful on any codebase.
- Consolidate: multiple mistakes sharing one failure mode → ONE lesson.
- Recurrence gate: "Would this recur in future session WITHOUT this reminder?" — No → skip
$learn.
- Auto-fix gate: "Could
$code-review/$code-simplifier/$security-review/$lint catch this?" — Yes → improve review skill instead.
- BOTH gates pass → ask user to run
$learn.
[CRITICAL-THINKING-MINDSET] Apply critical thinking, sequential thinking. Every claim needs traced proof, confidence >80% to act.
Anti-hallucination principle: Never present guess as fact — cite sources for every claim, admit uncertainty freely, self-check output for errors, cross-reference independently, stay skeptical of own confidence — certainty without evidence root of all hallucination.
AI Attention principle (Primacy-Recency): Put the 3 most critical rules at both top and bottom of long prompts/protocols so instruction adherence survives long context windows.
Goal-driven execution: Define success criteria first, loop until verified, and stop only when observable checks pass.
Tests verify intent: Tests must protect business rules/invariants and fail when the protected intent breaks, not only mirror current behavior.
Common AI Mistake Prevention (System Lessons)
- Re-read files after context compaction. Edit requires prior Read in same context; compaction wipes read state. Re-read before editing.
- Grep for old terms after bulk replacements. AI over-trusts find/replace completeness. Grep full repo after bulk edits for missed refs in docs/configs/catalogs.
- Check downstream references before deleting. Deletions cascade doc/code staleness. Map referencing files before removal.
- After memory loss, check existing state before creating new. Compaction wipes prior-work memory. Query current state to resume — never blindly duplicate.
- Verify AI-generated content against actual code. AI hallucinates APIs, class names, method signatures. Grep to confirm existence before documenting/referencing.
- Trace full dependency chain after edits. Changing a definition misses downstream consumers. Trace the full chain.
- When renaming, grep ALL consumer file types. Some file types silently ignore missing refs (no compile error). Search code, templates, configs, generated files.
- Trace ALL code paths when verifying correctness. Code existing ≠ code executing. Trace early exits, error branches, conditional skips — not just happy path.
- Update docs that embed canonical data when source changes. Docs inlining derived data (workflows, schemas, configs) go stale silently. Update all embedding docs alongside source.
- Verify sub-agent results after context recovery. Background agents may finish while parent compacted — grep-verify output, don't trust assumed completion.
- Cross-check full target list against sub-agent assignments. Parallel sub-agents by category miss boundary items. Reconcile union of assignments against target list before proceeding.
- Sub-agents inherit knowledge only from their agent .md definition — use custom agent types, not built-in Explore. Tool adoption = permission + knowledge + enforcement (numbered workflow step).
- Persist sub-agent findings incrementally, not as a final batch. Long sub-agents hit cutoffs before final write — findings lost. Instruct append-per-section to report file.
- When debugging, ask "whose responsibility?" before fixing. Trace caller (wrong data) vs callee (wrong handling). Fix at responsible layer — never patch symptom site.
- Test failure → record a provisional verdict before trace/edit, then investigate. Use the full five-way taxonomy: SOURCE-WRONG (production violates intent), TEST-WRONG (assertion/setup is stale), TEST-NOT-OPTIMAL (valid but fragile or low-signal test), ENVIRONMENT-BLOCKED (external state prevents a verdict), or AMBIGUOUS (intent/evidence cannot choose safely). Then trace root cause and triangulate against the governing spec (
docs/specs/** if one exists) AND source. NEVER weaken an assertion, add a skip, relax a timeout, or change source merely to force green.
- Grep ALL removed names after extraction/refactoring. Primary file "done" ≠ secondary files clean. Grep entire scope for every removed symbol before declaring complete.
- Assume existing values are intentional — ask WHY before changing OR flagging one as a defect. Pattern-matching as "wrong" skips context. Before changing or reporting any constant/limit/flag/cutoff: read comments, git blame, the CALLER's ordering (the guarantee that makes the value correct usually lives in code running immediately BEFORE the cited line), and 2+ sibling call sites of the same convention. A doc stating WHAT without WHY is missing rationale, not proof of a missing guard — and in a validation pass, an accurate
file:line citation proves the transcription, never the defect.
- Verify ALL affected outputs, not just the first. One build green ≠ all green. Multi-stack changes (backend/frontend/tests/docs) require verifying EVERY output.
- Evaluate fit before copying a nearby pattern. Closest example ≠ matching preconditions — verify the new context shares the same constraints, base classes, scope, lifetime.
- Holistic-first debugging — resist nearest-attention trap. Don't dive into first plausible cause. List EVERY precondition (config, env vars, paths, DB, endpoints, creds, versions, DI, data). Verify each against evidence (grep/query — not reasoning). Ask "what would falsify this?" — if nothing, it's not a hypothesis. Most expensive failure: going deeper in "obvious" layer while bug sits in layer never questioned.
- Surgical changes — apply the diff test (context-aware). Two modes: (1) Bug fix → every line traces to the bug; no restyling; orphan cleanup only for imports YOUR changes made unused. (2) Review/enhancement → implement improvements AND announce as "Enhancement beyond main request: [what]". Never silently scope-creep. Diff test: "Would this line exist if I wasn't asked to do X?" — if no, delete or announce.
- Surface ambiguity before coding — don't pick silently. Multiple valid interpretations → present each with effort: "[Request] could mean (1) [N h], (2) [N h]. Which matters?" List scope/format/volume/constraints assumptions first. If simpler path exists, say so. Never silently pick.
- [MANDATORY FIRST ACTION] ALWAYS activate a suitable skill or workflow BEFORE responding. Match task against workflow catalog + skill list; invoke via skill invocation or
$start-workflow <workflowId>. NEVER answer or write code before checking. Skip = protocol violation.
- Why-Review adversarial mindset — apply when reviewing any plan, decision, or design. Default SKEPTIC not VALIDATOR: steel-man a rejected alternative, invert each stated reason ("what does it sacrifice?"), stress-test top 2-3 assumptions, run pre-mortem ("ships, fails in 3 months — what breaks?"), surface 1-2 alternatives author missed. Section presence ≠ quality; quality = causal reasoning + concrete mitigations + evidence, not "it's better" or "monitor closely".
- Front-load report-write in sub-agent prompts for large reviews. Many-file sub-agents hit budget before final write — findings lost. Design prompts so: (1) report-write is first explicit deliverable, (2) append per-file/section (not batched), (3) scope bounded so reads don't exhaust budget. Truncated mid-sentence with no report file → spawn narrower scope, don't retry same prompt.
- After context compaction, re-verify all prior phase outcomes before continuing. Summaries describe intent, not environment state (git index, filesystem, processes). On resume, FIRST audit: git status, re-read modified files, verify filesystem. Every "completed" claim is an untested hypothesis until evidence confirms.
- OOM/memory: check row count before row size. Triage: (1) Unbounded query — no DB filter for trigger? Push filter to DB; eliminates OOM. (2) Large rows? Projection reduces proportionally. Row reduction > projection in ROI.
- Assert the outcome your system OWNS, never the intermediate state your INFRASTRUCTURE owns. When testing anything asynchronous (queue/broker delivery, retries, background jobs, caches, replication), assert the final business/entity state. NEVER assert the delivery bookkeeping — consume/send status, attempt counts, last-error, row existence or counts in a broker, scheduler, or outbox/inbox table. That bookkeeping lives in shared infrastructure that ANY co-running process (a peer worker, a second replica, a leftover local container) can write, usually under a deterministic shared key, so the assertion silently tests the developer's environment instead of the system: green when run alone, flaky the instant anything else shares that broker + database. Gate question for every assertion: "would this hold no matter WHICH process did the work?" — if no, assert the converged data state instead. Corollary: process-local fault injection and in-process telemetry cannot gate work any process may perform — use them as stress amplifiers (arm → bounded window → disarm → assert convergence), never as preconditions.
- Keep domain concepts out of generic/shared/infrastructure layers. Reusable layer (shared library, framework, infra module) must reference NO consumer-specific domain concept — tenant/customer/product IDs, business entities, feature rules. Leak compiles + runs → passes review silently while coupling the "reusable" layer to one consumer. Keep shared type domain-free; push domain fields/logic down into the consumer via subclass/composition. — why: a layer coupled to one consumer's domain is no longer reusable.
1---2name: graph-build3description: [Code Intelligence] Use when you need to build, update, or sync the code review knowledge graph. Flag: --scope={full|update|sync} (default auto-detect); --scope=full forces a full rebuild, --scope=update re-parses uncommitted working-tree changes, --scope=sync syncs committed git changes then updates the working tree.4---5
6> Codex compatibility note:
7>
8> - Invoke repository skills with `$skill-name` in Codex; this mirrored copy rewrites legacy Claude `/skill-name` references.
9> - Task tracker mandate: BEFORE executing any workflow or skill step, create/update task tracking for all steps and keep it synchronized as progress changes.
10> - User-question prompts mean to ask the user directly in Codex.
11> - Ignore Claude-specific mode-switch instructions when they appear.
12> - Strict execution contract: when a user explicitly invokes a skill, execute that skill protocol as written.
13> - Subagent authorization: when a skill is user-invoked or AI-detected and its protocol requires subagents, that skill activation authorizes use of the required `spawn_agent` subagent(s) for that task.
14> - Do not skip, reorder, or merge protocol steps unless the user explicitly approves the deviation first.
15> - For workflow skills, execute each listed child-skill step explicitly and report step-by-step evidence.
16> - If a required step/tool cannot run in this environment, stop and ask the user before adapting.
17
18<!-- CODEX:PROJECT-REFERENCE-LOADING:START -->
19
20## Codex Project-Reference Loading (No Hooks)
21
22Codex uses static project-reference loading instead of runtime-injected project docs.
23When coding, planning, debugging, testing, or reviewing, open project docs explicitly using this routing.
24
25**Always read:**
26
27- `docs/project-config.json` (project-specific paths, commands, modules, and workflow/test settings)
28- `docs/project-reference/docs-index-reference.md` (routes to the full `docs/project-reference/*` catalog)
29- `docs/project-reference/lessons.md` (always-on guardrails and anti-patterns)
30
31**Missing/stale context route:** If `docs/project-config.json`, the docs index, `lessons.md`, `CLAUDE.md`, `AGENTS.md`, or any task-required reference doc is missing or stale, auto-run `$project-init` or the narrow setup route (`$project-config`, `$docs-init`, `$scan-all`, `$scan --target=<key>`, `$claude-md-init`) before ordinary project-specific work. If Codex mirrors or `AGENTS.md` are missing/stale, ask the user to run `$sync-codex`; do not auto-run it.
32
33**Situation-based docs:**
34
35- Project structure/architecture/tech-stack/deployment/setup (any layer — backend, frontend, or infra): `project-structure-reference.md`
36- Backend/CQRS/API/domain/entity changes: `backend-patterns-reference.md`, `domain-entities-reference.md`
37- Frontend/UI/styling/design-system: `frontend-patterns-reference.md`, `scss-styling-guide.md`, `design-system/README.md`
38- Spec authoring, `docs/specs/` pathing, or TC format: `feature-spec-reference.md`, `spec-system-reference.md`, `spec-principles.md`
39- Behavior/public-contract changes or spec-test-code sync: `workflow-spec-test-code-cycle-reference.md` plus the spec docs above
40- Derived spec indexes/ERDs/reimplementation guides: `spec-system-reference.md` and source Feature Specs under `docs/specs/`
41- Integration test implementation/review: `integration-test-reference.md`
42- E2E test implementation/review: `e2e-test-reference.md`
43- Code review/audit work: `code-review-rules.md` plus domain docs above based on changed files
44
45Do not read all docs blindly. Start from `docs-index-reference.md`, then open only relevant files for the task.
46
47<!-- CODEX:PROJECT-REFERENCE-LOADING:END -->
48
49## Quick Summary
50
51**Goal:** [Code Intelligence] Build, update, or sync the code review knowledge graph. Parses codebase with Tree-sitter into a structural graph (functions, classes, imports, calls, tests) stored in SQLite. Enables blast-radius analysis and graph-powered code review. `--scope` selects the lifecycle operation — `full` (rebuild), `update` (working-tree changes; folds former `/graph-update`), `sync` (committed git changes + working-tree update; folds former `/graph-sync`) — default auto-detects from graph status.
52
53**Workflow:**
54
551. **Detect** — classify request scope and target artifacts.
562. **Execute** — apply required steps with evidence-backed actions.
573. **Verify** — confirm constraints, output quality, and completion evidence.
58
59**Key Rules:**
60
61- **Scope flag** (see [Scope Mode](#scope-mode---scope)): default (no flag) auto-detects via `status` (full if never built, else incremental); `--scope=full` forces rebuild; `--scope=update` = uncommitted working-tree changes (CLI `update`, folds `/graph-update`); `--scope=sync` = committed git changes then working-tree update (CLI `sync` + `update`, folds `/graph-sync`).
62- MUST ATTENTION keep claims evidence-based (`file:line`) with confidence >80% to act.
63- MUST ATTENTION keep task tracking updated as each step starts/completes.
64- NEVER skip mandatory workflow or skill gates.
65
66## Prerequisites
67
68Requires Python 3.10+ with: `pip install tree-sitter tree-sitter-language-pack networkx`
69
70## Scope Mode (`--scope=`)
71
72| `--scope` | CLI verb(s) | What it does | Former skill |
73| ----------------- | ---------------------------------- | ------------------------------------------------------------------------- | --------------- |
74| _(none, default)_ | `status` → `build` or `update` | Auto-detect: full build if never built, else incremental update | — |
75| `full` | `build --json` | Force full rebuild (ignore existing graph) | — |
76| `update` | `update --json` | Re-parse uncommitted working-tree changes (staged/unstaged) | `/graph-update` |
77| `sync` | `sync --json` then `update --json` | Sync committed git changes (last_synced_commit → HEAD), then working tree | `/graph-sync` |
78
79Default (no `--scope`) auto-detects from `status`. `update` = working-tree changes (base `HEAD~1`, options `--base`/`--repo`). `sync` = committed changes + chained working-tree `update` (the sync→update chain is preserved). Pick `--scope` FIRST (default auto-detect), then run the matching branch.
80
81**Automatic HEAD reconciliation (independent of this skill).** Two hooks call the CLI `sync` directly, so a manual run is rarely needed just because HEAD moved:
82
83| Hook | Fires | Catches |
84| -------------------- | -------------------------------- | --------------------------------------------------------------------------------------------------------------------------------------------------------- |
85| `graph-session-init` | SessionStart (`startup\|resume`) | Commits that landed while the session was away |
86| `graph-prompt-sync` | UserPromptSubmit | A `git pull` / `checkout` / `merge` performed MID-session — gated on a cheap `git rev-parse HEAD` compare, so Python spawns only when HEAD actually moved |
87
88The `graph-auto-update` PostToolUse hook covers file EDITS; these two cover HEAD MOVES. Between them the graph should already be current — reach for a manual `--scope=sync` only to force the issue or after a rebase/force-push.
89
90## Steps
91
92### Default (auto-detect) — build or incremental update
93
941. **Check availability** — Run via Bash:
95
96 ```bash
97 python .claude/scripts/code_graph status --json
98 ```
99
100 - If error (Python/deps missing): show install instructions and stop
101 - If `last_updated` is null: graph never built → proceed with full build
102 - If `last_updated` exists: graph exists → proceed with incremental update
103
1042. **Build or update** — Run via Bash:
105 - Full build: `python .claude/scripts/code_graph build --json`
106 - Incremental: `python .claude/scripts/code_graph update --json`
107
1083. **Report results** from JSON output:
109 - Files parsed, nodes created, edges created
110 - Languages detected
111 - Any errors encountered
112 - Build type (full vs incremental)
113
114### `--scope=full` — force full rebuild
115
116```bash
117python .claude/scripts/code_graph build --json
118```
119
120Always does a complete reparse (ignores existing graph). Report: files parsed, nodes/edges created, languages, build type.
121
122### `--scope=update` — uncommitted working-tree changes (folds `/graph-update`)
123
124```bash
125python .claude/scripts/code_graph update --json
126```
127
128Diffs the working tree against a base commit (default `HEAD~1`), re-parses changed/added files, removes deleted files from the graph, then re-runs the API + implicit connectors. Options: `--base <commit>` (default `HEAD~1`), `--repo <path>`. Report: files updated/added/deleted, or "Working tree clean — graph already up to date".
129
130### `--scope=sync` — committed git changes + working tree (folds `/graph-sync`)
131
1321. **Sync committed changes** via Bash:
133
134 ```bash
135 python .claude/scripts/code_graph sync --json
136 ```
137
138 Diffs `last_synced_commit` → HEAD, re-parses changed/added files, removes deleted files, re-runs connectors, stores new HEAD. If it reports `full_rebuild_fallback` (unreachable commit after rebase/force-push), a full rebuild was triggered — inform the user.
139
1402. **Update working tree** (chained — former graph-sync step 4) via Bash:
141
142 ```bash
143 python .claude/scripts/code_graph update --json
144 ```
145
1463. **Report:** files synced/added/modified/deleted, then working-tree update results (or "working tree clean").
147
148> **Older checkout is a deliberate no-op.** When HEAD is an ANCESTOR of the graph's `last_synced_commit` — you checked out an older branch or commit the graph already covers — `sync` returns `{"reason": "graph_ahead_skipped"}` and changes nothing: no re-parse, and `last_synced_commit` is NOT dragged backwards. This is intentional. `git diff A..B` succeeds in BOTH directions, so without the guard an older checkout would silently rewrite the graph to the older tree. **Trade-off to know:** while sitting on that older branch the graph describes the newer tree, so it can report symbols the checked-out code does not have; run `--scope=full` if you need the graph to match an older branch exactly. Diverged branches are NOT "behind" (neither commit is an ancestor of the other) and still sync normally.
149
150> **sync vs update:** `sync` detects **committed** changes only (`last_synced_commit` → HEAD; use after pull/merge/checkout). `update` detects **working-tree** changes (staged/uncommitted, mid-session). No `--files` flag on `sync`/`update` (auto-detected from git); there is no `incremental` subcommand (use `update`).
151
152## When to Use
153
154- First time setting up graph for a project
155- After major refactoring or branch switches
156- If graph seems stale or out of sync
157- Graph auto-updates via the PostToolUse hook (file edits) and auto-syncs via the SessionStart / UserPromptSubmit hooks (HEAD moves), so manual builds are rarely needed
158
159## Notes
160
161- Graph stored at `.code-graph/graph.db` (SQLite, auto-gitignored)
162- Supported: Python, TypeScript, JavaScript, Vue, Go, Rust, Java, C#, Ruby, Kotlin, Swift, PHP, Solidity, C/C++
163- Initial build: ~10s for 500 files. Incremental: <2s
164
165## Connectors (Auto-Run)
166
167After build/update, graph connectors run automatically if configured in `project-config.json`:
168
169- **API Endpoints**: Frontend HTTP calls matched to backend routes (`graphConnectors.apiEndpoints`)
170- **Implicit Connections**: Entity events, message bus, command events (`graphConnectors.implicitConnections`)
171
172See `$graph-connect-api` and `.claude/docs/code-graph-mechanism.md` for details.
173
174## DB Performance Indexes
175
176The graph database includes optimized indexes created automatically on first build:
177
178- `idx_nodes_name` — fast node name lookups for search
179- `idx_edges_kind_source` — composite index for filtered edge queries (kind + source)
180- `idx_edges_kind_target` — composite index for filtered edge queries (kind + target)
181
182These indexes are defined in the init schema and auto-create in any new project on first `graph build`.
183
184## Auto-Connect After Build
185
186After building, the CLI automatically runs:
187
1881. **API connector** — detects frontend HTTP calls matching backend route definitions
1892. **Implicit connector** — detects behavioral relationships (entity events, bus messages, command events) based on rules in `project-config.json → graphConnectors.implicitConnections[]`
190
191This creates edges for MESSAGE_BUS, TRIGGERS_EVENT, PRODUCES_EVENT, TRIGGERS_COMMAND_EVENT, and API_ENDPOINT — enabling full system flow tracing via the `trace` command.
192
193## Describe (AI-Friendly Command Reference)
194
195Run `python .claude/scripts/code_graph describe --json` to get MCP-style structured descriptions of all available CLI commands, their parameters, and usage. Useful for AI agents to discover graph capabilities programmatically.
196
197## Valid CLI Subcommands
198
199`build`, `update`, `status`, `blast-radius`, `query`, `connections`, `trace`, `search`, `find-path`, `batch-query`, `sync`, `export`, `export-mermaid`, `connect-api`, `connect-implicit`, `review-context`, `describe`
200
201`migrate-paths` is also available to convert existing databases built with absolute file paths into repo-relative storage without reparsing the repository.
202
203### Common Mistakes (DO NOT USE)
204
205| Invalid Command | Correct Alternative |
206| ----------------------- | ----------------------------------------------------------------- |
207| `incremental` | `update --json` (incremental is the default behavior of `update`) |
208| `update --files <list>` | `update --json` (auto-detects changed files via git diff) |
209| `build --files <list>` | `build --json` (always does full rebuild) |
210| `sync --files <list>` | `sync --json` (auto-detects from git) |
211| `file_summary` | `connections <file> --json` |
212
213---
214
215# Build Graph
216
217Build or incrementally update the persistent code knowledge graph for this repository.
218
219<!-- SYNC:ai-mistake-prevention -->
220
221> **AI Mistake Prevention** — Failure modes to avoid on every task:
222>
223> **Re-read files after context changes.** Context compaction, resume, or long-running work can make memory stale; verify current files before acting.
224> **Verify generated content against source evidence.** AI hallucinates APIs, names, claims, and document facts. Check the relevant source before documenting or referencing.
225> **Check downstream references before deleting or renaming.** Removing an artifact can stale docs, generated mirrors, configs, and callers; map references first.
226> **Trace the full impact chain after edits.** Changing a definition can miss derived outputs and consumers. Follow the affected chain before declaring done.
227> **Verify ALL affected outputs, not just the first.** One green check is not all green checks; validate every output surface the change can affect.
228> **Assume existing values are intentional — ask WHY before changing OR flagging one as a defect.** Before changing or reporting a constant, limit, flag, cutoff, wording, or pattern, read nearby context and history, the CALLER's ordering, and 2+ sibling call sites of the same convention. A doc stating WHAT without WHY is missing rationale, not proof of a missing guard.
229> **Surface ambiguity before acting — don't pick silently.** Multiple valid interpretations require an explicit question or stated assumption with risk.
230> **Assert the outcome your system owns, not the intermediate state your infrastructure owns.** When verifying async work, assert the final business state — never the delivery/retry bookkeeping held in shared infrastructure that any co-running process can write. Such a check passes when run alone and flakes the moment anything else shares that infrastructure.
231> **Keep shared guidance role-relevant.** Universal guidance must help every receiving skill or agent; code-specific obligations belong only in code-specific protocols.
232
233<!-- /SYNC:ai-mistake-prevention -->
234
235<!-- SYNC:critical-thinking-mindset -->
236
237> **Critical Thinking Mindset** — Apply critical thinking, sequential thinking. Every claim needs traced proof, confidence >80% to act.
238> **Anti-hallucination:** Never present guess as fact — cite sources for every claim, admit uncertainty freely, self-check output for errors, cross-reference independently, stay skeptical of own confidence — certainty without evidence root of all hallucination.
239
240<!-- /SYNC:critical-thinking-mindset -->
241
242<!-- SYNC:critical-thinking-mindset:reminder -->
243
244**MUST ATTENTION** apply critical + sequential thinking — every claim needs appropriate traced evidence (`file:line` for repo/code claims; source URL or artifact section for research, product, content, and docs claims); confidence >80% to act, <60% DO NOT recommend. Anti-hallucination: never present guess as fact, admit uncertainty freely, cross-reference independently, stay skeptical of own confidence.
245
246<!-- /SYNC:critical-thinking-mindset:reminder -->
247
248<!-- SYNC:ai-mistake-prevention:reminder -->
249
250**MUST ATTENTION** apply AI mistake prevention — verify generated content against evidence, trace downstream references before deleting or renaming, verify all affected outputs, re-read files after context loss, and surface ambiguity before acting.
251
252<!-- /SYNC:ai-mistake-prevention:reminder -->
253
254<!-- SYNC:project-protocol-overlay -->
255
256> **Project Protocol Overlay** — Before executing this skill, resolve any PROJECT overlay rules layered onto it: match this skill's name against the `Target` column of the project's skill-protocol index (`docs/project-reference/skill-protocols-reference.md` by default; a `referenceDocs` entry in `docs/project-config.json` overrides the path), taking the most specific matching tier ONLY — exact name > glob > `*`. **That precedence orders overlays against EACH OTHER, never against this skill.** Read ONLY the matched bodies, resolved as `<protocols-dir>/<Name>.md`; a row's Body link is display text, never a read path. A matched body that is missing or malformed is REPORTED and skipped — never reconstructed from the index Description. No index, or no match -> proceed with no overlay, silently. Full contract: `.claude/skills/project-skill-protocol/references/registry.md`.
257>
258> Overlays are **ADDITIVE ONLY**: they ADD rules on top of this skill's own protocol and NEVER replace, override, disable, or reinterpret a rule it already states — removing every overlay must return this skill to exactly its documented behavior. An overlay is a BRIEF, not an authority escalation: it can NEVER waive a workflow gate, git discipline, a review gate, or a user-confirmation gate. A genuine overlay-vs-skill conflict, or two equally-specific overlays that directly contradict -> surface both to the user; NEVER resolve silently.
259
260<!-- /SYNC:project-protocol-overlay -->
261
262<!-- SYNC:project-protocol-overlay:reminder -->
263
264**MUST ATTENTION** resolve project protocol overlays for this skill BEFORE executing — most specific matching tier only (exact > glob > `*`, which ranks overlays against each other, NEVER against this skill), read only matched bodies at `<protocols-dir>/<Name>.md`; a missing or malformed body is reported, never reconstructed. Overlays are ADDITIVE ONLY (they never replace this skill's own rules) and are a brief, NEVER an authority escalation; an equal-specificity contradiction goes to the user.
265
266<!-- /SYNC:project-protocol-overlay:reminder -->
267
268## Closing Reminders
269
270**Protocols in force (concise digest of the SYNC/shared blocks this skill carries) — MUST ATTENTION honor each canonical body:**
271
272- **AI Mistake Prevention:** verify generated content against evidence, trace downstream references, verify all affected outputs, re-read after context loss, surface ambiguity.
273- **Critical Thinking:** traced `file:line` proof per claim, confidence >80%, NEVER guess as fact.
274
275- **MANDATORY IMPORTANT MUST ATTENTION** break work into small todo tasks using task tracking BEFORE starting
276- **MANDATORY IMPORTANT MUST ATTENTION** search codebase for 3+ similar patterns before creating new code
277- **MANDATORY IMPORTANT MUST ATTENTION** cite `file:line` evidence for every claim (confidence >80% to act)
278- **MANDATORY IMPORTANT MUST ATTENTION** add a final review todo task to verify work quality
279
280**[TASK-PLANNING]** Before acting, analyze task scope and systematically break it into small todo tasks and sub-tasks using task tracking.
281
282<!-- CODEX:SYNC-PROMPT-PROTOCOLS:START -->
283
284## Hookless Prompt Protocol Mirror (Auto-Synced)
285
286Source: `.claude/.ck.json` + `.claude/skills/shared/sync-inline-versions.md` (`:full` blocks) + `.claude/scripts/lib/hookless-prompt-protocol.cjs`
287
288## [WORKFLOW-EXECUTION-PROTOCOL] [BLOCKING] Workflow Execution Protocol — MANDATORY IMPORTANT MUST CRITICAL. Do not skip for any reason.
289
290**Generic portability boundary:** Reusable skills and protocol text stay project-neutral; project-specific conventions are discovered from docs/project-config.json and docs/project-reference/. Apply shared AI-SDD from `shared/sdd-artifact-contract.md`. Read `docs/project-config.json` and `docs/project-reference/docs-index-reference.md`, then open the project reference docs named there. For spec, test-case, behavior-change, public-contract, or `docs/specs/` work, route through the local spec docs named by the docs index: `feature-spec-reference.md`, `spec-system-reference.md`, `spec-principles.md`, and `workflow-spec-test-code-cycle-reference.md` when specs/tests/code must stay synchronized. If either file or a required reference doc is missing or stale, auto-run `$project-init` (or the narrow lower-level route such as `$project-config`, `$docs-init`, `$scan-all`, or `$scan --target=<key>`) before ordinary project-specific work. Any supported AI tool may execute when this shared context and local docs are available.
291
2921. **DETECT:** If the prompt starts with an explicit slash skill/workflow command, execute it directly. Otherwise match the prompt against the workflow catalog and skill list.
2932. **ANALYZE:** Choose the best option: execute directly, invoke a skill, activate a standard workflow, or compose a custom step combination.
2943. **AUTO-SELECT:** Pick the best option yourself. Do not ask the user to choose between direct execution, skill, standard workflow, or custom workflow.
2954. **ACTIVATE:** For a selected workflow, call `$start-workflow <workflowId>`; for a selected skill, invoke that skill; for a custom workflow, sequence custom steps directly; for direct execution, proceed with the task.
2965. **CREATE TASKS:** task tracking for ALL workflow/skill/custom steps before execution when the selected path has multiple steps.
2976. **PARALLELIZE:** Before executing the task list, tag each task `PAR` (independent inputs + write set disjoint from every other `PAR` task) or `SEQ` (name the blocking dependency), group `PAR` tasks into waves, declare the wave plan, and spawn each wave's sub-agents in ONE message — all-return barrier per wave, fan-out one level deep unless a sub-agent's own definition authorizes further fan-out. Sequential-by-default is a defect when tasks are independent; do not parallelize shared write targets, output-consuming tasks, trivial single-file work, ordering a skill or workflow explicitly fixes, or user-approval gates.
2987. **EXECUTE:** Advance per the **Workflow Step Advancement & Parallel Phases** rule in your context instructions — model-driven; a sub-agent completion advances a step identically to an inline call; a parallel-phase group is an all-return barrier (advance only after ALL members return, never serialize it)
299
300## Shared AI-SDD Protocol Markers
301
302Source: `.claude/skills/shared/sync-inline-versions.md`
303
304## SYNC:ai-sdd-artifact-contract
305
306> **AI-SDD Artifact Contract** — Shared spec-driven development rules stay portable and source-owned.
307>
308> 1. Keep reusable AI-SDD principles in `.claude`; put repository-specific paths, commands, owners, products, and formats in project config/reference docs.
309> 2. Preserve cycle: `spec -> plan -> tasks -> implement -> verify -> update spec/docs`.
310> 3. Trace every requirement or invariant through decision, task, TC/test, source evidence, and docs/spec update.
311> 4. Treat code-to-spec extraction as reference-only until accepted by the canonical spec owner.
312> 5. Any supported AI tool may plan, implement, review, or verify with synced context; using multiple tools is optional.
313> 6. Update `.claude` source first, then sync generated mirrors; do not manually edit `.agents`, `.codex`, or `AGENTS.md`. — why: mirrors are generated artifacts; hand-edits are overwritten on the next sync
314> 7. If `docs/project-config.json`, root instruction files, or a required project-reference doc is missing or stale, auto-run `$project-init` or the narrow lower-level route before ordinary project-specific work.
315>
316> **Active reference:** `shared/sdd-artifact-contract.md` in the active skills root.
317
318---
319
320## SYNC:ai-sdd-artifact-contract:reminder
321
322- **MANDATORY** Apply `shared/sdd-artifact-contract.md`; keep reusable AI-SDD in `.claude` and local rules in project docs.
323- **MANDATORY** Code-to-spec extraction is reference-only until canonical acceptance; any supported AI tool may execute with synced context.
324- **MANDATORY** Update `.claude` source before syncing generated mirrors; do not manually edit `.agents`, `.codex`, or `AGENTS.md`.
325- **MANDATORY** Missing or stale project config, root instruction files, or required reference docs route project-specific work through `$project-init` or the narrow setup route automatically.
326 **[TASK-PLANNING] [MANDATORY]** BEFORE executing any workflow or skill step, create/update task tracking for all planned steps, then keep it synchronized as each step starts/completes.
327
328## [LESSON-LEARNED-REMINDER] [BLOCKING] Task Planning & Continuous Improvement — MANDATORY. Do not skip.
329
330Break work into small tasks (task tracking) before starting. Add final task: "Analyze AI mistakes & lessons learned".
331
332**Extract lessons — ROOT CAUSE ONLY, not symptom fixes:**
333
3341. Name the FAILURE MODE (reasoning/assumption failure), not symptom — "assumed API existed without reading source" not "used wrong enum value".
3352. Generality test: does this failure mode apply to ≥3 contexts/codebases? If not, abstract one level up.
3363. Write as a universal rule — strip project-specific names/paths/classes. Useful on any codebase.
3374. Consolidate: multiple mistakes sharing one failure mode → ONE lesson.
3385. **Recurrence gate:** "Would this recur in future session WITHOUT this reminder?" — No → skip `$learn`.
3396. **Auto-fix gate:** "Could `$code-review`/`$code-simplifier`/`$security-review`/`$lint` catch this?" — Yes → improve review skill instead.
3407. BOTH gates pass → ask user to run `$learn`.
341 **[CRITICAL-THINKING-MINDSET]** Apply critical thinking, sequential thinking. Every claim needs traced proof, confidence >80% to act.
342 **Anti-hallucination principle:** Never present guess as fact — cite sources for every claim, admit uncertainty freely, self-check output for errors, cross-reference independently, stay skeptical of own confidence — certainty without evidence root of all hallucination.
343 **AI Attention principle (Primacy-Recency):** Put the 3 most critical rules at both top and bottom of long prompts/protocols so instruction adherence survives long context windows.
344 **Goal-driven execution:** Define success criteria first, loop until verified, and stop only when observable checks pass.
345 **Tests verify intent:** Tests must protect business rules/invariants and fail when the protected intent breaks, not only mirror current behavior.
346
347## Common AI Mistake Prevention (System Lessons)
348
349- **Re-read files after context compaction.** Edit requires prior Read in same context; compaction wipes read state. Re-read before editing.
350- **Grep for old terms after bulk replacements.** AI over-trusts find/replace completeness. Grep full repo after bulk edits for missed refs in docs/configs/catalogs.
351- **Check downstream references before deleting.** Deletions cascade doc/code staleness. Map referencing files before removal.
352- **After memory loss, check existing state before creating new.** Compaction wipes prior-work memory. Query current state to resume — never blindly duplicate.
353- **Verify AI-generated content against actual code.** AI hallucinates APIs, class names, method signatures. Grep to confirm existence before documenting/referencing.
354- **Trace full dependency chain after edits.** Changing a definition misses downstream consumers. Trace the full chain.
355- **When renaming, grep ALL consumer file types.** Some file types silently ignore missing refs (no compile error). Search code, templates, configs, generated files.
356- **Trace ALL code paths when verifying correctness.** Code existing ≠ code executing. Trace early exits, error branches, conditional skips — not just happy path.
357- **Update docs that embed canonical data when source changes.** Docs inlining derived data (workflows, schemas, configs) go stale silently. Update all embedding docs alongside source.
358- **Verify sub-agent results after context recovery.** Background agents may finish while parent compacted — grep-verify output, don't trust assumed completion.
359- **Cross-check full target list against sub-agent assignments.** Parallel sub-agents by category miss boundary items. Reconcile union of assignments against target list before proceeding.
360- **Sub-agents inherit knowledge only from their agent .md definition — use custom agent types, not built-in Explore.** Tool adoption = permission + knowledge + enforcement (numbered workflow step).
361- **Persist sub-agent findings incrementally, not as a final batch.** Long sub-agents hit cutoffs before final write — findings lost. Instruct append-per-section to report file.
362- **When debugging, ask "whose responsibility?" before fixing.** Trace caller (wrong data) vs callee (wrong handling). Fix at responsible layer — never patch symptom site.
363- **Test failure → record a provisional verdict before trace/edit, then investigate.** Use the full five-way taxonomy: SOURCE-WRONG (production violates intent), TEST-WRONG (assertion/setup is stale), TEST-NOT-OPTIMAL (valid but fragile or low-signal test), ENVIRONMENT-BLOCKED (external state prevents a verdict), or AMBIGUOUS (intent/evidence cannot choose safely). Then trace root cause and triangulate against the governing spec (`docs/specs/**` if one exists) AND source. NEVER weaken an assertion, add a skip, relax a timeout, or change source merely to force green.
364- **Grep ALL removed names after extraction/refactoring.** Primary file "done" ≠ secondary files clean. Grep entire scope for every removed symbol before declaring complete.
365- **Assume existing values are intentional — ask WHY before changing OR flagging one as a defect.** Pattern-matching as "wrong" skips context. Before changing or reporting any constant/limit/flag/cutoff: read comments, git blame, the CALLER's ordering (the guarantee that makes the value correct usually lives in code running immediately BEFORE the cited line), and 2+ sibling call sites of the same convention. A doc stating WHAT without WHY is missing rationale, not proof of a missing guard — and in a validation pass, an accurate `file:line` citation proves the transcription, never the defect.
366- **Verify ALL affected outputs, not just the first.** One build green ≠ all green. Multi-stack changes (backend/frontend/tests/docs) require verifying EVERY output.
367- **Evaluate fit before copying a nearby pattern.** Closest example ≠ matching preconditions — verify the new context shares the same constraints, base classes, scope, lifetime.
368- **Holistic-first debugging — resist nearest-attention trap.** Don't dive into first plausible cause. List EVERY precondition (config, env vars, paths, DB, endpoints, creds, versions, DI, data). Verify each against evidence (grep/query — not reasoning). Ask "what would falsify this?" — if nothing, it's not a hypothesis. Most expensive failure: going deeper in "obvious" layer while bug sits in layer never questioned.
369- **Surgical changes — apply the diff test (context-aware).** Two modes: (1) Bug fix → every line traces to the bug; no restyling; orphan cleanup only for imports YOUR changes made unused. (2) Review/enhancement → implement improvements AND announce as "Enhancement beyond main request: [what]". Never silently scope-creep. Diff test: "Would this line exist if I wasn't asked to do X?" — if no, delete or announce.
370- **Surface ambiguity before coding — don't pick silently.** Multiple valid interpretations → present each with effort: "[Request] could mean (1) [N h], (2) [N h]. Which matters?" List scope/format/volume/constraints assumptions first. If simpler path exists, say so. Never silently pick.
371- **[MANDATORY FIRST ACTION] ALWAYS activate a suitable skill or workflow BEFORE responding.** Match task against workflow catalog + skill list; invoke via skill invocation or `$start-workflow <workflowId>`. NEVER answer or write code before checking. Skip = protocol violation.
372- **Why-Review adversarial mindset — apply when reviewing any plan, decision, or design.** Default SKEPTIC not VALIDATOR: steel-man a rejected alternative, invert each stated reason ("what does it sacrifice?"), stress-test top 2-3 assumptions, run pre-mortem ("ships, fails in 3 months — what breaks?"), surface 1-2 alternatives author missed. Section presence ≠ quality; quality = causal reasoning + concrete mitigations + evidence, not "it's better" or "monitor closely".
373- **Front-load report-write in sub-agent prompts for large reviews.** Many-file sub-agents hit budget before final write — findings lost. Design prompts so: (1) report-write is first explicit deliverable, (2) append per-file/section (not batched), (3) scope bounded so reads don't exhaust budget. Truncated mid-sentence with no report file → spawn narrower scope, don't retry same prompt.
374- **After context compaction, re-verify all prior phase outcomes before continuing.** Summaries describe intent, not environment state (git index, filesystem, processes). On resume, FIRST audit: git status, re-read modified files, verify filesystem. Every "completed" claim is an untested hypothesis until evidence confirms.
375- **OOM/memory: check row count before row size.** Triage: (1) Unbounded query — no DB filter for trigger? Push filter to DB; eliminates OOM. (2) Large rows? Projection reduces proportionally. Row reduction > projection in ROI.
376- **Assert the outcome your system OWNS, never the intermediate state your INFRASTRUCTURE owns.** When testing anything asynchronous (queue/broker delivery, retries, background jobs, caches, replication), assert the final business/entity state. NEVER assert the delivery bookkeeping — consume/send status, attempt counts, last-error, row existence or counts in a broker, scheduler, or outbox/inbox table. That bookkeeping lives in shared infrastructure that ANY co-running process (a peer worker, a second replica, a leftover local container) can write, usually under a deterministic shared key, so the assertion silently tests the developer's environment instead of the system: green when run alone, flaky the instant anything else shares that broker + database. Gate question for every assertion: "would this hold no matter WHICH process did the work?" — if no, assert the converged data state instead. Corollary: process-local fault injection and in-process telemetry cannot gate work any process may perform — use them as stress amplifiers (arm → bounded window → disarm → assert convergence), never as preconditions.
377- **Keep domain concepts out of generic/shared/infrastructure layers.** Reusable layer (shared library, framework, infra module) must reference NO consumer-specific domain concept — tenant/customer/product IDs, business entities, feature rules. Leak compiles + runs → passes review silently while coupling the "reusable" layer to one consumer. Keep shared type domain-free; push domain fields/logic down into the consumer via subclass/composition. — why: a layer coupled to one consumer's domain is no longer reusable.
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