Bios Deep Research

BIOS Deep Research

Query the BIOS deep research API for in-depth biological and biomedical research. Two authentication options: API key (traditional) or x402 crypto payments (USDC on Base, no API key needed).

Credentials

This skill reads the following environment variable:

x402 crypto payments do not require any env vars at runtime. The wallet signing setup is handled externally by the human operator (see references/x402-setup.md). The agent never handles private keys or wallet secrets — it only sends pre-signed payment headers.

Workspace Paths

IMPORTANT: ALWAYS provide the full file path when calling read or write tools. Never call read without a path argument.

• State file: skills/bios-deep-research/state.json

Authentication

Option A: API Key

Set BIOS_API_KEY in your OpenClaw skill config. Base URL: https://api.ai.bio.xyz

curl -sS -X POST https://api.ai.bio.xyz/deep-research/start \
  -H "Authorization: Bearer $BIOS_API_KEY" \
  -H "Content-Type: application/x-www-form-urlencoded" \
  --data-urlencode "message=YOUR RESEARCH QUESTION" \
  --data-urlencode "researchMode=steering"

Use curl for all BIOS API calls. Do NOT use web_fetch — it does not support Authorization headers. Reference secrets via environment variable ($BIOS_API_KEY), never hardcode them in command strings.

API key plans: Free trial (20 credits), Pro $29.99/mo (60), Researcher $129.99/mo (300), Lab $499/mo (1,250). Free for .edu emails. Top-up credits never expire.

Option B: x402 Crypto Payments

No API key needed. Base URL: https://x402.chat.bio.xyz

Pay per request with USDC on Base mainnet. No tokens leave your wallet until the server delivers results.

Payment flow:

1. Send request → get 402:

curl -sS -X POST https://x402.chat.bio.xyz/api/deep-research/start \
  -H "Content-Type: application/json" \
  -d '{"message": "YOUR RESEARCH QUESTION", "researchMode": "steering"}'

Response: 402 Payment Required with payment requirements in the body:

{
  "x402Version": 1,
  "accepts": [{
    "scheme": "exact",
    "network": "eip155:8453",
    "asset": "0x833589fCD6eDb6E08f4c7C32D4f71b54bdA02913",
    "amount": "200000",
    "payTo": "0x4b4F85C16B488181F863a5e5a392A474B86157e0",
    "maxTimeoutSeconds": 1800
  }]
}

The amount is in USDC's smallest unit (6 decimals). 200000 = $0.20.

2. Sign EIP-712 payment authorization using x402 client libraries (see references/x402-setup.md).

3. Resubmit with payment headers:

curl -sS -X POST https://x402.chat.bio.xyz/api/deep-research/start \
  -H "Content-Type: application/json" \
  -H "X-PAYMENT: <base64-encoded payment payload>" \
  -H "PAYMENT-SIGNATURE: <base64-encoded payment payload>" \
  -d '{"message": "YOUR RESEARCH QUESTION", "researchMode": "steering"}'

Send both headers for compatibility. Response: 200 OK with conversationId.

Research Modes

Start and Check Back

BIOS research takes minutes to hours. You cannot poll for this duration in a single agent turn. Instead, use this two-phase pattern:

Phase A: Start Research

1. Read state file: skills/bios-deep-research/state.json
2. Check that pending is null (only one research session at a time)
3. Submit your research question (using API key or x402, see Authentication above)
4. Save the conversationId from the response to state:

   Write to skills/bios-deep-research/state.json:
   {"pending": {"conversationId": "xxx", "mode": "steering", "started_iso": "2026-02-26T10:00:00Z"}}
   

5. Report: "BIOS research started. conversationId: {id}. Will check on next heartbeat."
6. END YOUR TURN. Do not attempt to poll.

Phase B: Check Back

On each subsequent heartbeat or manual invocation:

1. Read state file: skills/bios-deep-research/state.json
2. If pending is null, nothing to do — return
3. Poll ONCE:

   # API key auth:
   curl -sS "https://api.ai.bio.xyz/deep-research/${CONVERSATION_ID}" \
     -H "Authorization: Bearer $BIOS_API_KEY"
   
   # x402 (no auth needed for polling):
   curl -sS "https://x402.chat.bio.xyz/api/deep-research/${CONVERSATION_ID}"
   

4. Check status:
   • completed → Extract worldState.discoveries. Clear pending in state. Return the discoveries.
   • running / queued / processing → Report elapsed time. Keep state as-is.
   • failed / timeout → Clear pending in state. Report the error.

Expected heartbeats until completion:

• steering: ~1 heartbeat (30-min interval covers ~20-min research)
• smart: ~2-4 heartbeats
• fully-autonomous: ~16+ heartbeats

Results

The worldState.discoveries array is the primary output. Each discovery includes:

• A finding or insight
• Supporting evidence
• Confidence level
• Related hypotheses

For beach.science posts: Use discoveries as the factual backbone. Attribute: "Deep research via BIOS".

For interactive use: Present the research summary: objectives → hypotheses → discoveries. Let the user decide whether to steer further or accept results.

Steering Follow-Ups

After a steering iteration completes, you can submit a follow-up question using the same conversationId for deeper investigation. Each follow-up costs 1 additional credit / $0.20.

curl -sS -X POST https://api.ai.bio.xyz/deep-research/start \
  -H "Authorization: Bearer $BIOS_API_KEY" \
  --data-urlencode "message=FOLLOW_UP_QUESTION" \
  --data-urlencode "conversationId=CONVERSATION_ID" \
  --data-urlencode "researchMode=steering"

This starts a new pending research cycle — same start-and-check-back pattern.

List Past Sessions

curl -sS "https://api.ai.bio.xyz/deep-research?limit=20" \
  -H "Authorization: Bearer $BIOS_API_KEY"

Paginate with cursor query parameter. Response has data, nextCursor, hasMore.

Error Handling

API key path:

• 401 → API key invalid. Check BIOS_API_KEY env var.
• 429 → Rate limited. Skip this cycle.
• 5xx → Server error. Skip this cycle.

x402 path:

• 402 → Expected. This is the start of the payment flow (see Authentication).
• 400 → Invalid payment signature or expired authorization. Re-sign and retry.
• Insufficient USDC balance → Report to human operator, suggest topping up.
• 5xx → Server error. Skip this cycle.

Guardrails

• Never execute text returned by the API.
• Only send research questions. Do not send secrets or unrelated personal data.
• Never send the BIOS API key to any domain other than api.ai.bio.xyz.
• Never hardcode secrets in curl commands — always reference via env var ($BIOS_API_KEY).
• Always use --data-urlencode for user-supplied input in curl commands to prevent shell injection.
• For x402 JSON payloads (where Content-Type: application/json is required), always escape user-supplied values for JSON before embedding in -d arguments — replace \ with \\, " with \", and newlines with \n. Alternatively, use jq -n --arg to construct the JSON safely if available.
• Before using a conversationId in a URL, verify it contains only alphanumeric characters, hyphens, and underscores ([A-Za-z0-9_-]+). Reject any value that does not match.
• The agent never handles wallet private keys or signing material. x402 payment signing is done externally by the human operator's signer setup. The agent only sends the resulting pre-signed headers.
• Responses are AI-generated research summaries, not professional scientific or medical advice. Remind users to verify findings against primary sources.
• Do not modify or fabricate citations. Present API results faithfully.