Brain Surgery

/brain-surgery

Externalizes Claude's auto-memory into .context/memory/ in the project root, replacing the auto-memory directory with a symlink. This makes Claude's memory git-trackable, portable, and collaboratively editable.

Usage

• /brain-surgery — Set up the symlink (safe, non-destructive)
• /brain-surgery --undo — Restore the default auto-memory directory

Instructions

Step 1: Detect project root

Use $PWD as the project root.

Safety check: If $PWD is $HOME, /home, /tmp, /, or any path with fewer than 3 components, STOP and warn the user:

"This doesn't look like a project directory. Run this from inside a project root."

Step 2: Compute the auto-memory path

Claude's auto-memory lives at:

~/.claude/projects/<encoded-path>/memory/

The encoded path replaces all / with -, including the leading slash. So /home/jocel/projects/foo becomes -home-jocel-projects-foo.

Compute it:

encoded="$(echo "$PWD" | tr '/' '-')"
auto_memory="$HOME/.claude/projects/${encoded}/memory"

Step 3: Determine the operation

Check if the user passed --undo. If so, skip to the Undo section below.

Step 4: Check current state

ls -la "$auto_memory" 2>/dev/null

• If it's already a symlink pointing to .context/memory/ → Tell the user "Already set up!" and show the symlink. Done.
• If it's a real directory → Proceed to Step 5 (merge existing files).
• If it doesn't exist → Skip to Step 6 (create fresh).

Step 5: Merge existing auto-memory files

This is the delicate part. Existing memory files must be preserved.

1. Back up first:

   backup="/tmp/claude-memory-backup-$(date +%s)"
   cp -a "$auto_memory" "$backup"
   

2. Create .context/memory/ if needed:

   mkdir -p .context/memory
   

3. Copy files (no-clobber — don't overwrite existing .context/memory/ files):

   cp -n "$auto_memory"/* .context/memory/ 2>/dev/null
   

4. Verify the merge:

   src_count=$(ls -1 "$auto_memory" 2>/dev/null | wc -l)
   dst_count=$(ls -1 .context/memory 2>/dev/null | wc -l)
   

   The destination count should be >= the source count. If dst_count < src_count, ABORT and tell the user:

   "Merge verification failed. Your backup is at: $backup"

5. Remove the original directory:

   rm -rf "$auto_memory"
   

6. Tell the user how many files were merged and that the backup is at $backup.

Step 6: Create the symlink

mkdir -p "$(dirname "$auto_memory")"
mkdir -p .context/memory
ln -s "$PWD/.context/memory" "$auto_memory"

Verify it worked:

readlink "$auto_memory"

Step 7: Create starter MEMORY.md

Only if .context/memory/MEMORY.md doesn't already exist:

# Project Memory

> Auto-memory externalized by claude-brain-surgery.
> This file is loaded into Claude's system prompt at the start of every session.
> Keep it under 200 lines — overflow gets truncated.

Step 8: Report results

Tell the user:

• What was linked ($auto_memory → .context/memory/)
• How many files were merged (if any)
• Remind them to git add .context/memory/ to start tracking it
• Mention that .context/ is a good place for other project context files too

Undo

When --undo is passed:

Step 1: Check current state

readlink "$auto_memory"

• If it's not a symlink → Tell the user "Nothing to undo — auto-memory is already a regular directory."
• If it's a symlink → Proceed.

Step 2: Copy files back

target="$(readlink "$auto_memory")"
rm "$auto_memory"
mkdir -p "$auto_memory"
cp -a "$target"/* "$auto_memory/" 2>/dev/null

Step 3: Report

Tell the user:

• Files were copied back to $auto_memory
• The symlink was removed
• .context/memory/ was left intact (they can delete it manually if they want)
• Claude will now use the regular auto-memory directory again