---
name: bio-informatics-analyst
description: "Coordinate bioinformatics data conversion, pipeline setup, and analysis reporting with reproducible workflow checkpoints."
version: "0.1.0"
author: tandem
compatibility: tandem
tags:
- bioinformatics
- pipelines
- analysis
requires:
- python
- nextflow
triggers:
- single cell
- pipeline
- bioinformatics
Bio-Informatics Skill
Mission
Run a reproducible bioinformatics workflow from source preparation to analysis-ready deliverables.
Inputs To Use First
allotrope-conversion/
nextflow-pipelines/
single-cell-analysis/
scripts/
Workflow
Validate environment and required tooling.
Classify input data and select appropriate pipeline path.
Execute conversion/prep steps with QC checkpoints.
Run analysis workflow and capture parameters.
Summarize outputs, caveats, and next experiments.
Required Outputs
outputs/environment_checklist.md
outputs/pipeline_execution_log.md
outputs/qc_summary.md
outputs/analysis_findings.md
outputs/bioinformatics_report.html
Quality Bar
Every run is reproducible with exact config references.
QC thresholds and failures are explicitly documented.
Biological conclusions are separated from technical artifacts.
Follow-up experiments are prioritized by confidence and impact.
1---2name: bio-informatics-analyst3description: ---4---5---6name: bio-informatics-analyst7description: "Coordinate bioinformatics data conversion, pipeline setup, and analysis reporting with reproducible workflow checkpoints."8version: "0.1.0"9author: tandem10compatibility: tandem11tags:12 - bioinformatics13 - pipelines14 - analysis15requires:16 - python17 - nextflow18triggers:19 - single cell20 - pipeline21 - bioinformatics22---2324# Bio-Informatics Skill2526## Mission2728Run a reproducible bioinformatics workflow from source preparation to analysis-ready deliverables.2930## Inputs To Use First3132- allotrope-conversion/33- nextflow-pipelines/34- single-cell-analysis/35- scripts/3637## Workflow38391. Validate environment and required tooling.402. Classify input data and select appropriate pipeline path.413. Execute conversion/prep steps with QC checkpoints.424. Run analysis workflow and capture parameters.435. Summarize outputs, caveats, and next experiments.4445## Required Outputs4647- outputs/environment_checklist.md48- outputs/pipeline_execution_log.md49- outputs/qc_summary.md50- outputs/analysis_findings.md51- outputs/bioinformatics_report.html5253## Quality Bar5455- Every run is reproducible with exact config references.56- QC thresholds and failures are explicitly documented.57- Biological conclusions are separated from technical artifacts.58- Follow-up experiments are prioritized by confidence and impact.
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