LTKB Query Skill
Search FDA LTKB records (DILIrank 2.0 + DILIst) by any entity. Auto-detects type by pattern:
| Input Pattern | Detected As | Searched In |
|---|---|---|
LT00040 |
LTKB ID | DILIrank only |
2 (digits) |
DILIst ID | DILIst only |
| anything else | drug name | both datasets (substring) |
Datasets
DILIrank 2.0 — 1,036 FDA-approved drugs ranked by DILI concern:
| vDILI-Concern | Meaning |
|---|---|
| vMOST-DILI-concern | Strong evidence of causing DILI |
| vLess-DILI-concern | Some evidence of causing DILI |
| vNo-DILI-concern | No credible evidence |
| vAmbiguous-DILI-concern | Conflicting/insufficient evidence |
Columns: LTKBID, CompoundName, SeverityClass, LabelSection, vDILI-Concern, Comment
DILIst — 1,279 drugs classified by DILI severity:
| Classification | Meaning |
|---|---|
| 1 | DILI-positive |
| 0 | DILI-negative |
Columns: DILIST_ID, CompoundName, DILIst Classification, Routs of Administration
API
| Function | Input | Returns |
|---|---|---|
load_all(rank_path, list_path) |
Excel paths | {"dilirank": [...], "dilist": [...]} |
search(data, entity) |
data dict + entity string | {"entity", "type", "dilirank": [], "dilist": []} |
search_batch(data, entities) |
data dict + list of strings | {entity: search_result} |
summarize(result, entity) |
search result + label | compact text |
to_json(result) |
search result | JSON string |
Usage
See if __name__ == "__main__" block in 48_LTKB.py for runnable examples covering: drug name, LTKB ID, DILIst ID, batch search, and JSON output.
Data
- Source: FDA LTKB — https://www.fda.gov/science-research/bioinformatics-tools/liver-toxicity-knowledge-base-ltkb
- Files:
Drug Induced Liver Injury Rank (DILIrank 2.0) Dataset FDA.xlsx,DILIst Supplementary Table.xlsx - Path:
DATA_DIRvariable in48_LTKB.py