Source: https://github.com/aipoch/medical-research-skills
Anki Card Creator
Structured flashcard generation for medical study content.
When to Use
- Use this skill when the task needs structured Anki-style cards from medical notes, textbook excerpts, lecture summaries, or Q&A study material.
- Use this skill for academic writing tasks that require explicit assumptions, bounded scope, and a reproducible output format.
- Use this skill when you need a documented fallback path for missing inputs, execution errors, or partial evidence.
Key Features
- Scope-focused workflow aligned to: Use anki-card-creator for academic writing workflows that need structured execution, explicit assumptions, and clear output boundaries for study-card generation.
- Packaged executable path(s):
scripts/main.py.
- Reference material available in
references/ for task-specific guidance.
- Structured execution path designed to keep outputs consistent and reviewable.
Dependencies
See ## Prerequisites above for related details.
Python: 3.10+. Repository baseline for current packaged skills.
argparse: unspecified. Declared in requirements.txt.
re: unspecified. Declared in requirements.txt.
Example Usage
cd "20260318/scientific-skills/Academic Writing/anki-card-creator"
python -m py_compile scripts/main.py
python scripts/main.py --help
Example run plan:
- Confirm the user input, output path, and any required config values.
- Edit the in-file
CONFIG block or documented parameters if the script uses fixed settings.
- Run
python scripts/main.py with the validated inputs.
- Review the generated output and return the final artifact with any assumptions called out.
Implementation Details
See ## Workflow above for related details.
- Execution model: validate the request, choose the packaged workflow, and produce a bounded deliverable.
- Input controls: confirm the source files, scope limits, output format, and acceptance criteria before running any script.
- Primary implementation surface:
scripts/main.py.
- Reference guidance:
references/ contains supporting rules, prompts, or checklists.
- Parameters to clarify first: input path, output path, scope filters, thresholds, and any domain-specific constraints.
- Output discipline: keep results reproducible, identify assumptions explicitly, and avoid undocumented side effects.
Quick Check
Use this command to verify that the packaged script entry point can be parsed before deeper execution.
python -m py_compile scripts/main.py
Audit-Ready Commands
Use these concrete commands for validation. They are intentionally self-contained and avoid placeholder paths.
python -m py_compile scripts/main.py
python scripts/main.py --help
Workflow
- Confirm the study objective, learner level, card format, and content source before drafting cards.
- Check whether the material is already in Q/A form, needs manual restructuring, or is too incomplete for safe conversion.
- Use the packaged script when the input matches supported arguments; otherwise produce a manual card plan without fabricating content.
- Return cards or a card blueprint with assumptions, tagging guidance, and validation notes.
- If required content is missing, stop and request only the minimum additional input.
Use Cases
- Convert lecture notes into atomic recall cards
- Turn drug summaries into mechanism and adverse-effect cards
- Prepare anatomy cards with structure, location, and function blocks
Parameters
| Parameter |
Type |
Required |
Default |
Description |
--input, -i |
string |
No |
- |
Input text file containing Q/A pairs |
--output, -o |
string |
No |
anki_cards.txt |
Output TSV file for Anki import |
--drug |
flag |
No |
false |
Create a drug card from structured fields |
--anatomy |
flag |
No |
false |
Create an anatomy card from structured fields |
--name |
string |
No |
- |
Drug or structure name |
--mechanism |
string |
No |
- |
Mechanism of action |
--indications |
string |
No |
- |
Clinical indications |
--side-effects |
string |
No |
- |
Side effects |
--location |
string |
No |
- |
Anatomical location |
--function |
string |
No |
- |
Anatomical function |
Returns
- Anki-importable TSV output
- Card fronts and backs aligned to a single learning target
- Clear note when input is incomplete or too ambiguous for safe conversion
Example
Q: What is the mechanism of metformin?
Risk Assessment
| Risk Indicator |
Assessment |
Level |
| Code Execution |
Local Python script execution only |
Medium |
| Network Access |
No external API calls |
Low |
| File System Access |
Reads local input files and writes output deck |
Medium |
| Instruction Tampering |
Standard prompt-guided workflow |
Low |
| Data Exposure |
Output remains in workspace unless shared by user |
Low |
Security Checklist
Prerequisites
No additional Python packages required for the packaged entry point.
Evaluation Criteria
Success Metrics
Test Cases
- Basic Functionality: Help output and script parse succeed
- Edge Case: Missing structured fields triggers bounded fallback
- Output Quality: Cards remain concise and non-duplicative
Lifecycle Status
- Current Stage: Draft
- Next Review Date: 2026-03-20
- Known Issues: Raw prose still requires manual curation before import at scale
- Planned Improvements:
- Safer direct-text parsing for non-file inputs
- More explicit tag presets by subject
Output Requirements
Every final response should make these items explicit when they are relevant:
- Objective or requested deliverable
- Inputs used and assumptions introduced
- Workflow or decision path
- Core result, recommendation, or artifact
- Constraints, risks, caveats, or validation needs
- Unresolved items and next-step checks
Error Handling
- If required inputs are missing, state exactly which fields are missing and request only the minimum additional information.
- If the task goes outside the documented scope, stop instead of guessing or silently widening the assignment.
- If
scripts/main.py fails, report the failure point, summarize what still can be completed safely, and provide a manual fallback.
- Do not fabricate files, citations, data, search results, or execution outcomes.
Input Validation
This skill accepts requests that match the documented purpose of anki-card-creator and include enough context to complete the workflow safely.
Do not continue the workflow when the request is out of scope, missing a critical input, or would require unsupported assumptions. Instead respond:
anki-card-creator only handles its documented workflow. Please provide the missing required inputs or switch to a more suitable skill.
References
- references/audit-reference.md - Supported scope, audit commands, and fallback boundaries
Response Template
Use the following fixed structure for non-trivial requests:
- Objective
- Inputs Received
- Assumptions
- Workflow
- Deliverable
- Risks and Limits
- Next Checks
If the request is simple, you may compress the structure, but still keep assumptions and limits explicit when they affect correctness.
1---2name: anki-card-creator3description: Use anki-card-creator for academic writing workflows that need structured execution, explicit assumptions, and clear output boundaries for study-card generation.4license: MIT5---6> **Source**: [https://github.com/aipoch/medical-research-skills](https://github.com/aipoch/medical-research-skills)
7
8# Anki Card Creator
9
10Structured flashcard generation for medical study content.
11
12## When to Use
13
14- Use this skill when the task needs structured Anki-style cards from medical notes, textbook excerpts, lecture summaries, or Q&A study material.
15- Use this skill for academic writing tasks that require explicit assumptions, bounded scope, and a reproducible output format.
16- Use this skill when you need a documented fallback path for missing inputs, execution errors, or partial evidence.
17
18## Key Features
19
20- Scope-focused workflow aligned to: Use anki-card-creator for academic writing workflows that need structured execution, explicit assumptions, and clear output boundaries for study-card generation.
21- Packaged executable path(s): `scripts/main.py`.
22- Reference material available in `references/` for task-specific guidance.
23- Structured execution path designed to keep outputs consistent and reviewable.
24
25## Dependencies
26
27See `## Prerequisites` above for related details.
28
29- `Python`: `3.10+`. Repository baseline for current packaged skills.
30- `argparse`: `unspecified`. Declared in `requirements.txt`.
31- `re`: `unspecified`. Declared in `requirements.txt`.
32
33## Example Usage
34
35```bash
36cd "20260318/scientific-skills/Academic Writing/anki-card-creator"
37python -m py_compile scripts/main.py
38python scripts/main.py --help
39```
40
41Example run plan:
421. Confirm the user input, output path, and any required config values.
432. Edit the in-file `CONFIG` block or documented parameters if the script uses fixed settings.
443. Run `python scripts/main.py` with the validated inputs.
454. Review the generated output and return the final artifact with any assumptions called out.
46
47## Implementation Details
48
49See `## Workflow` above for related details.
50
51- Execution model: validate the request, choose the packaged workflow, and produce a bounded deliverable.
52- Input controls: confirm the source files, scope limits, output format, and acceptance criteria before running any script.
53- Primary implementation surface: `scripts/main.py`.
54- Reference guidance: `references/` contains supporting rules, prompts, or checklists.
55- Parameters to clarify first: input path, output path, scope filters, thresholds, and any domain-specific constraints.
56- Output discipline: keep results reproducible, identify assumptions explicitly, and avoid undocumented side effects.
57
58## Quick Check
59
60Use this command to verify that the packaged script entry point can be parsed before deeper execution.
61
62```bash
63python -m py_compile scripts/main.py
64```
65
66## Audit-Ready Commands
67
68Use these concrete commands for validation. They are intentionally self-contained and avoid placeholder paths.
69
70```bash
71python -m py_compile scripts/main.py
72python scripts/main.py --help
73```
74
75## Workflow
76
771. Confirm the study objective, learner level, card format, and content source before drafting cards.
782. Check whether the material is already in Q/A form, needs manual restructuring, or is too incomplete for safe conversion.
793. Use the packaged script when the input matches supported arguments; otherwise produce a manual card plan without fabricating content.
804. Return cards or a card blueprint with assumptions, tagging guidance, and validation notes.
815. If required content is missing, stop and request only the minimum additional input.
82
83## Use Cases
84
85- Convert lecture notes into atomic recall cards
86- Turn drug summaries into mechanism and adverse-effect cards
87- Prepare anatomy cards with structure, location, and function blocks
88
89## Parameters
90
91| Parameter | Type | Required | Default | Description |
92|-----------|------|----------|---------|-------------|
93| `--input`, `-i` | string | No | - | Input text file containing Q/A pairs |
94| `--output`, `-o` | string | No | `anki_cards.txt` | Output TSV file for Anki import |
95| `--drug` | flag | No | false | Create a drug card from structured fields |
96| `--anatomy` | flag | No | false | Create an anatomy card from structured fields |
97| `--name` | string | No | - | Drug or structure name |
98| `--mechanism` | string | No | - | Mechanism of action |
99| `--indications` | string | No | - | Clinical indications |
100| `--side-effects` | string | No | - | Side effects |
101| `--location` | string | No | - | Anatomical location |
102| `--function` | string | No | - | Anatomical function |
103
104## Returns
105
106- Anki-importable TSV output
107- Card fronts and backs aligned to a single learning target
108- Clear note when input is incomplete or too ambiguous for safe conversion
109
110## Example
111
112`Q: What is the mechanism of metformin?`
113
114## Risk Assessment
115
116| Risk Indicator | Assessment | Level |
117|----------------|------------|-------|
118| Code Execution | Local Python script execution only | Medium |
119| Network Access | No external API calls | Low |
120| File System Access | Reads local input files and writes output deck | Medium |
121| Instruction Tampering | Standard prompt-guided workflow | Low |
122| Data Exposure | Output remains in workspace unless shared by user | Low |
123
124## Security Checklist
125
126- [ ] No hardcoded credentials or API keys
127- [ ] No unauthorized file system access (`../`)
128- [ ] Output does not expose sensitive information not present in input
129- [ ] Prompt injection protections in place
130- [ ] Input file paths validated before execution
131- [ ] Output directory restricted to workspace
132- [ ] Error messages kept concise and non-deceptive
133- [ ] Dependencies reviewed before broader deployment
134
135## Prerequisites
136
137No additional Python packages required for the packaged entry point.
138
139## Evaluation Criteria
140
141### Success Metrics
142- [ ] Script path parses successfully
143- [ ] Card structure is atomic and importable
144- [ ] Output stays within provided study source
145- [ ] Missing data triggers explicit fallback behavior
146
147### Test Cases
1481. **Basic Functionality**: Help output and script parse succeed
1492. **Edge Case**: Missing structured fields triggers bounded fallback
1503. **Output Quality**: Cards remain concise and non-duplicative
151
152## Lifecycle Status
153
154- **Current Stage**: Draft
155- **Next Review Date**: 2026-03-20
156- **Known Issues**: Raw prose still requires manual curation before import at scale
157- **Planned Improvements**:
158 - Safer direct-text parsing for non-file inputs
159 - More explicit tag presets by subject
160
161## Output Requirements
162
163Every final response should make these items explicit when they are relevant:
164
165- Objective or requested deliverable
166- Inputs used and assumptions introduced
167- Workflow or decision path
168- Core result, recommendation, or artifact
169- Constraints, risks, caveats, or validation needs
170- Unresolved items and next-step checks
171
172## Error Handling
173
174- If required inputs are missing, state exactly which fields are missing and request only the minimum additional information.
175- If the task goes outside the documented scope, stop instead of guessing or silently widening the assignment.
176- If `scripts/main.py` fails, report the failure point, summarize what still can be completed safely, and provide a manual fallback.
177- Do not fabricate files, citations, data, search results, or execution outcomes.
178
179## Input Validation
180
181This skill accepts requests that match the documented purpose of `anki-card-creator` and include enough context to complete the workflow safely.
182
183Do not continue the workflow when the request is out of scope, missing a critical input, or would require unsupported assumptions. Instead respond:
184
185> `anki-card-creator` only handles its documented workflow. Please provide the missing required inputs or switch to a more suitable skill.
186
187## References
188
189- [references/audit-reference.md](references/audit-reference.md) - Supported scope, audit commands, and fallback boundaries
190
191## Response Template
192
193Use the following fixed structure for non-trivial requests:
194
1951. Objective
1962. Inputs Received
1973. Assumptions
1984. Workflow
1995. Deliverable
2006. Risks and Limits
2017. Next Checks
202
203If the request is simple, you may compress the structure, but still keep assumptions and limits explicit when they affect correctness.