gabrielmoreira GDKD Query Skill
Search canonical GDKD rows by drug or gene entity. Auto-detects input type by pattern:
| Input Pattern | Detected As | Match Logic |
|---|---|---|
ABL1, EGFR |
Gene symbol | substring on gene |
imatinib, erlotinib |
Drug name | substring on drug |
| anything else | Free text | substring on drug OR gene |
API
| Function | Input | Returns |
|---|---|---|
load_gdkd(path) |
CSV path | list[dict] |
search(rows, entity) |
single entity string | list[dict] |
search_batch(rows, entities) |
list of entity strings | dict[str, list[dict]] |
summarize(hits, entity) |
rows + label | compact text |
to_json(hits) |
rows | list[dict] |
Usage
See if __name__ == "__main__" block in example.py for runnable
examples.
Data
- Source: GDKD normalized full-package output
- Paper: Dienstmann et al., Cancer Discovery 2015;5(2):118-123
- Format: CSV
- Columns:
drug,gene,score,source - Path:
resources_metadata/dti/GDKD/gdkd.csv(defaultDATA_PATHinexample.py)