Source: https://github.com/aipoch/medical-research-skills
Medical Literature Search Strategy Generator
When to Use
- Use this skill when the request matches its documented task boundary.
- Use it when the user can provide the required inputs and expects a structured deliverable.
- Prefer this skill for repeatable, checklist-driven execution rather than open-ended brainstorming.
Key Features
- Scope-focused workflow aligned to: Medical literature search strategy generator. Given a user's natural-language description (e.g., meta-analysis topic, PICOS elements, research question), automatically extract medical entities (disease, intervention, population, outcomes) and generate professional search queries for seven major databases (PubMed, Cochrane, Embase, Web of Science, CNKI, Wanfang, VIP). Useful for developing search strategies for systematic reviews and meta-analyses.
- Documentation-first workflow with no packaged script requirement.
- Reference material available in
references/ for task-specific guidance.
- Structured execution path designed to keep outputs consistent and reviewable.
Dependencies
Python: 3.10+. Repository baseline for current packaged skills.
Third-party packages: not explicitly version-pinned in this skill package. Add pinned versions if this skill needs stricter environment control.
Example Usage
Skill directory: 20260316/scientific-skills/Others/meta-search-builder
No packaged executable script was detected.
Use the documented workflow in SKILL.md together with the references/assets in this folder.
Example run plan:
- Read the skill instructions and collect the required inputs.
- Follow the documented workflow exactly.
- Use packaged references/assets from this folder when the task needs templates or rules.
- Return a structured result tied to the requested deliverable.
Implementation Details
See ## Workflow above for related details.
- Execution model: validate the request, choose the packaged workflow, and produce a bounded deliverable.
- Input controls: confirm the source files, scope limits, output format, and acceptance criteria before running any script.
- Primary implementation surface: instruction-only workflow in
SKILL.md.
- Reference guidance:
references/ contains supporting rules, prompts, or checklists.
- Parameters to clarify first: input path, output path, scope filters, thresholds, and any domain-specific constraints.
- Output discipline: keep results reproducible, identify assumptions explicitly, and avoid undocumented side effects.
Workflow
Step 1: Entity extraction
Extract PICOS elements from the user's input:
- P (Population): target population / disease
- I (Intervention): intervention
- C (Comparator): comparator (optional)
- O (Outcome): outcome measures (optional)
- S (Study): study type (default: RCT)
Extraction rules:
- Limit the number of keywords to at most 5
- Simplify descriptive phrases (e.g., "patients with ovarian cancer" -> "ovarian cancer")
- Map non-standard terms to common medical terminology
- Use standardized outcome terms where appropriate
Step 2: Generate search strategies for seven databases
See references/databases.md for database-specific syntax and examples.
Output format
## Extracted medical entities
- P (Population/Disease): xxx
- I (Intervention): xxx
- C (Comparator): xxx
- O (Outcome): xxx
- S (Study type): xxx
## Search strategies
### 1. PubMed
[search query]
### 2. Cochrane Library
[search query]
### 3. Embase
[search query]
### 4. Web of Science
[search query]
### 5. CNKI (China National Knowledge Infrastructure)
[search query]
### 6. Wanfang
[search query]
### 7. VIP
[search query]
When Not to Use
- Do not use this skill when the required source data, identifiers, files, or credentials are missing.
- Do not use this skill when the user asks for fabricated results, unsupported claims, or out-of-scope conclusions.
- Do not use this skill when a simpler direct answer is more appropriate than the documented workflow.
Required Inputs
- A clearly specified task goal aligned with the documented scope.
- All required files, identifiers, parameters, or environment variables before execution.
- Any domain constraints, formatting requirements, and expected output destination if applicable.
Output Contract
- Return a structured deliverable that is directly usable without reformatting.
- If a file is produced, prefer a deterministic output name such as
meta_search_builder_result.md unless the skill documentation defines a better convention.
- Include a short validation summary describing what was checked, what assumptions were made, and any remaining limitations.
Validation and Safety Rules
- Validate required inputs before execution and stop early when mandatory fields or files are missing.
- Do not fabricate measurements, references, findings, or conclusions that are not supported by the provided source material.
- Emit a clear warning when credentials, privacy constraints, safety boundaries, or unsupported requests affect the result.
- Keep the output safe, reproducible, and within the documented scope at all times.
Failure Handling
- If validation fails, explain the exact missing field, file, or parameter and show the minimum fix required.
- If an external dependency or script fails, surface the command path, likely cause, and the next recovery step.
- If partial output is returned, label it clearly and identify which checks could not be completed.
Quick Validation
Run this minimal verification path before full execution when possible:
No local script validation step is required for this skill.
Expected output format:
Result file: meta_search_builder_result.md
Validation summary: PASS/FAIL with brief notes
Assumptions: explicit list if any
1---2name: meta-search-builder3description: Medical literature search strategy generator. Given a user's natural-language description (e.g., meta-analysis topic, PICOS elements, research question), automatically extract medical entities (disease, intervention, population, outcomes) and generate professional search queries for seven major databases (PubMed, Cochrane, Embase, Web of Science, CNKI, Wanfang, VIP). Useful for developing search strategies for systematic reviews and meta-analyses.4license: MIT5---6> **Source**: [https://github.com/aipoch/medical-research-skills](https://github.com/aipoch/medical-research-skills)
7
8# Medical Literature Search Strategy Generator
9
10## When to Use
11
12- Use this skill when the request matches its documented task boundary.
13- Use it when the user can provide the required inputs and expects a structured deliverable.
14- Prefer this skill for repeatable, checklist-driven execution rather than open-ended brainstorming.
15
16## Key Features
17
18- Scope-focused workflow aligned to: Medical literature search strategy generator. Given a user's natural-language description (e.g., meta-analysis topic, PICOS elements, research question), automatically extract medical entities (disease, intervention, population, outcomes) and generate professional search queries for seven major databases (PubMed, Cochrane, Embase, Web of Science, CNKI, Wanfang, VIP). Useful for developing search strategies for systematic reviews and meta-analyses.
19- Documentation-first workflow with no packaged script requirement.
20- Reference material available in `references/` for task-specific guidance.
21- Structured execution path designed to keep outputs consistent and reviewable.
22
23## Dependencies
24
25- `Python`: `3.10+`. Repository baseline for current packaged skills.
26- `Third-party packages`: `not explicitly version-pinned in this skill package`. Add pinned versions if this skill needs stricter environment control.
27
28## Example Usage
29
30```text
31Skill directory: 20260316/scientific-skills/Others/meta-search-builder
32No packaged executable script was detected.
33Use the documented workflow in SKILL.md together with the references/assets in this folder.
34```
35
36Example run plan:
371. Read the skill instructions and collect the required inputs.
382. Follow the documented workflow exactly.
393. Use packaged references/assets from this folder when the task needs templates or rules.
404. Return a structured result tied to the requested deliverable.
41
42## Implementation Details
43
44See `## Workflow` above for related details.
45
46- Execution model: validate the request, choose the packaged workflow, and produce a bounded deliverable.
47- Input controls: confirm the source files, scope limits, output format, and acceptance criteria before running any script.
48- Primary implementation surface: instruction-only workflow in `SKILL.md`.
49- Reference guidance: `references/` contains supporting rules, prompts, or checklists.
50- Parameters to clarify first: input path, output path, scope filters, thresholds, and any domain-specific constraints.
51- Output discipline: keep results reproducible, identify assumptions explicitly, and avoid undocumented side effects.
52
53## Workflow
54
55### Step 1: Entity extraction
56
57Extract PICOS elements from the user's input:
58
591. **P (Population)**: target population / disease
602. **I (Intervention)**: intervention
613. **C (Comparator)**: comparator (optional)
624. **O (Outcome)**: outcome measures (optional)
635. **S (Study)**: study type (default: RCT)
64
65Extraction rules:
66- Limit the number of keywords to at most 5
67- Simplify descriptive phrases (e.g., "patients with ovarian cancer" -> "ovarian cancer")
68- Map non-standard terms to common medical terminology
69- Use standardized outcome terms where appropriate
70
71### Step 2: Generate search strategies for seven databases
72
73See [references/databases.md](references/databases.md) for database-specific syntax and examples.
74
75#### Output format
76
77```
78
79## Extracted medical entities
80
81- P (Population/Disease): xxx
82- I (Intervention): xxx
83- C (Comparator): xxx
84- O (Outcome): xxx
85- S (Study type): xxx
86
87## Search strategies
88
89### 1. PubMed
90[search query]
91
92### 2. Cochrane Library
93[search query]
94
95### 3. Embase
96[search query]
97
98### 4. Web of Science
99[search query]
100
101### 5. CNKI (China National Knowledge Infrastructure)
102[search query]
103
104### 6. Wanfang
105[search query]
106
107### 7. VIP
108[search query]
109```
110
111## When Not to Use
112
113- Do not use this skill when the required source data, identifiers, files, or credentials are missing.
114- Do not use this skill when the user asks for fabricated results, unsupported claims, or out-of-scope conclusions.
115- Do not use this skill when a simpler direct answer is more appropriate than the documented workflow.
116
117## Required Inputs
118
119- A clearly specified task goal aligned with the documented scope.
120- All required files, identifiers, parameters, or environment variables before execution.
121- Any domain constraints, formatting requirements, and expected output destination if applicable.
122
123## Output Contract
124
125- Return a structured deliverable that is directly usable without reformatting.
126- If a file is produced, prefer a deterministic output name such as `meta_search_builder_result.md` unless the skill documentation defines a better convention.
127- Include a short validation summary describing what was checked, what assumptions were made, and any remaining limitations.
128
129## Validation and Safety Rules
130
131- Validate required inputs before execution and stop early when mandatory fields or files are missing.
132- Do not fabricate measurements, references, findings, or conclusions that are not supported by the provided source material.
133- Emit a clear warning when credentials, privacy constraints, safety boundaries, or unsupported requests affect the result.
134- Keep the output safe, reproducible, and within the documented scope at all times.
135
136## Failure Handling
137
138- If validation fails, explain the exact missing field, file, or parameter and show the minimum fix required.
139- If an external dependency or script fails, surface the command path, likely cause, and the next recovery step.
140- If partial output is returned, label it clearly and identify which checks could not be completed.
141
142## Quick Validation
143
144Run this minimal verification path before full execution when possible:
145
146```text
147No local script validation step is required for this skill.
148```
149
150Expected output format:
151
152```text
153Result file: meta_search_builder_result.md
154Validation summary: PASS/FAIL with brief notes
155Assumptions: explicit list if any
156```