How do I install the Repodb Query skill?

Run npx skillmds@latest add gabrielmoreira/repodb-query in your terminal (requires Node.js), paste this page's agent-chat prompt into Claude, Cursor, or any MCP-connected agent, or download the SKILL.md file and copy it into your agent's skills directory.

Is Repodb Query safe to use?

This skill has not completed SkillMD's automated safety review yet. Independent scanners report: SkillSpector: PASS, Skill Scanner: PASS. Capability flags: executes scripts. SkillMD never runs a skill's scripts for you; review the SKILL.md before installing.

Which AI agents work with Repodb Query?

This skill is tagged as working with Claude Code, Claude.ai, OpenAI Codex. SKILL.md is an open format, so most agents that read a skills directory can load it too.

Is Repodb Query free to use?

Yes. Installing skills from SkillMD is free, and the skill stays under its author's original license.

Who published Repodb Query?

gabrielmoreira (@gabrielmoreira) published this skill. Their other Agent Skills are listed on their SkillMD profile.

Repodb Query by gabrielmoreira — Agent Skill

Name: Repodb Query
Rating: 4.2 (5 reviews)
Author: gabrielmoreira

Repodb Query

Query the RepoDB drug repurposing database. Use whenever the user asks about drug-disease associations, drug repurposing candidates, or wants to look up any entity (drug name, indication, DrugBank ID, UMLS CUI, NCT ID) in RepoDB.

gabrielmoreira Updated Sep 9, 2026 17 repo stars

File contents

RepoDB Query Skill

Search RepoDB records by any entity. Auto-detects type by prefix:

Input Pattern	Detected As	Match Logic
`DB00584`	DrugBank ID	exact on `drugbank_id`
`C0020538`	UMLS CUI	exact on `ind_id`
`NCT00001234`	Trial ID	exact on `NCT`
anything else	free text	substring on `drug_name` OR `ind_name`

API

Function	Input	Returns
`load_repodb(path)`	CSV path	DataFrame
`search(df, entity)`	single entity string	DataFrame
`search_batch(df, entities)`	list of entity strings	dict[str, DataFrame]
`summarize(hits, entity)`	DataFrame + label	compact text
`to_json(hits)`	DataFrame	list[dict]

Usage

See if __name__ == "__main__" block in repodb_query.py for runnable examples covering: drug name, DrugBank ID, UMLS CUI, indication name, batch search, and JSON output.

Data

Source: full.csv (comma or tab separated, auto-detected)
Columns: drug_name, drugbank_id, ind_name, ind_id, NCT, status, phase, DetailedStatus
Path: DATA_PATH variable in repodb_query.py

Frequently asked questions