gabrielmoreira RepurposeDrugs Query Skill
Search canonical drug-disease repurposing rows. Auto-detects query type by pattern:
| Input Pattern | Detected As | Match Logic |
|---|---|---|
34567890 |
PMID | exact on pmid |
| anything else | free text | substring on drug OR disease |
API
| Function | Input | Returns |
|---|---|---|
load_data(path) |
CSV path | list[dict] |
search(rows, entity) |
single entity string | list[dict] |
search_batch(rows, entities) |
list of entity strings | dict[str, list[dict]] |
summarize(hits, entity) |
rows + label | compact text |
to_json(hits) |
rows | list[dict] |
Usage
See if __name__ == "__main__" block in example.py for runnable examples.
Data
- Source: RepurposeDrugs normalized full-package output
- URL: https://repurposedrugs.org/
- Local file:
repurposedrugs.csv - Columns:
drug,disease,score,status,pmid - Path:
resources_metadata/drug_repurposing/RepurposeDrugs/repurposedrugs.csv