Search Literature

You are working on finding literature as part of a broader research effort. Your goal is to find prior work that directly bears on the query and produce a focused summary of the literature you find.

Literature Search Mandate

• Stay narrowly scoped: 2–6 papers that precisely bear on the query is the target. Fewer is fine if it directly addresses the query; do not pad with tangential work.
• Prioritize papers that directly study the specific phenomenon, technique, or claim under investigation — not papers that merely touch the same parent field.
• Relevant literature can include work that falsifies or bounds the specified phenomenon, technique, or claim. Not just work that supports it.
• Download the full papers (TeX source or PDF) so downstream agents can reference the original papers.
• Read each paper and extract the parts that speak to the query; skip unrelated material. Also skip appendix sections and/or supplementary material to avoid exhausting context size limits.
• Produce a structured summary framed around the original query, not a general landscape map.

Literature Search Input

Arguments: $ARGUMENTS

The arguments describe the findings or questions to investigate.

Literature Search Folder setup

Set up an output folder for your artifacts: OUTPUT_DIR: mktemp -d -p ./tmp search-literature-output-XXXX

mkdir -p "<OUTPUT_DIR>/papers"

• <OUTPUT_DIR>/papers/ — downloaded papers (TeX source or PDF) go here
• <OUTPUT_DIR>/summary.md — your final structured summary (required filename)

Literature Search Strategy

Because the query is specific, run fewer but sharper searches than a generic review:

1. Exact-phenomenon query: Search for the precise phenomenon or finding described in the query, using the same technical vocabulary the user used.
2. Mechanism query: Search for the likely underlying mechanism or mathematical structure (e.g. "symmetry breaking", "stationary manifold", "gradient flow bifurcation").
3. Disconfirming query: Search for results that would contradict or bound the finding — knowing the failure modes matters as much as confirmation.
4. Follow-up (optional): If one paper is highly relevant, search for related work by the same authors or papers that cite it.

Target arXiv specifically (include arxiv or site:arxiv.org in queries). Google Scholar is acceptable too.

Literature Search Summary File Format

Your summary.md file must follow this structure:

# Targeted Literature Search: [one-line restatement of the query]

## Query
[The specific finding or question you investigated, in 1–3 sentences. Include any background context the caller provided.]

## Direct Answers from the Literature
[2–3 paragraphs: what do the papers collectively say about the query? Lead with the most load-bearing finding. Call out confirming, disconfirming, and partial results separately.]

## Papers

### [Paper Title] (arXiv:XXXX.XXXXX)
- **Authors**: [author list]
- **Year**: [year]
- **Full paper**: papers/XXXX.XXXXX.pdf or papers/XXXX.XXXXX/XXX.tex
- **Relevance to query**: [the one or two specific reasons this paper bears on the query]
- **Key excerpted finding**: [the specific result, bound, or mechanism the paper contributes to this query — not a general summary of the paper]
- **Methods/setup**: [only the parts relevant to the query]
- **Caveats**: [assumptions or scope limits that could restrict the finding's applicability]

### [Next Paper Title] ...
...

## Open Questions
[What does the literature *not* resolve about the query? These are candidate hypotheses the caller may want to investigate empirically or leave as acknowledged gaps.]

Literature Search Execution Steps

1. Parse query: Extract the specific findings/questions from the arguments.
2. Search: Run 2–4 focused WebSearch queries following the strategy above. Identify candidate papers.
3. Validate relevance: For each candidate, fetch the arXiv abstract page with WebFetch. Keep only papers that directly address the query. Err on the side of rejection — an irrelevant paper is worse than a missing one here because the caller is already deep in their own work.
4. Download TeX source or PDF: For each relevant paper, try to download the TeX source and extract it:

   curl -L -OJ --no-progress-meter -w "%{filename_effective}\n" --output-dir "<OUTPUT_DIR>/papers" "https://arxiv.org/src/XXXX.XXXXX"
   # If .tar.gz was downloaded:
   mkdir "<OUTPUT_DIR>/papers/XXXX.XXXXX"
   tar -xzvf "<OUTPUT_DIR>/papers/<DOWNLOADED FILENAME>" -C "<OUTPUT_DIR>/papers/XXXX.XXXXX"
   rm "<OUTPUT_DIR>/papers/<DOWNLOADED FILENAME>"
   # For other file endings (e.g. .gz), use the appropriate tool to extract it to "<OUTPUT_DIR>/papers/XXXX.XXXXX/"
   

   Look for the main .tex filename in the tar output to reference it in your summary. ONLY IF the TeX source is not available for a particular paper, download the PDF instead:

   curl -L --no-progress-meter "https://arxiv.org/pdf/XXXX.XXXXX.pdf" -o "<OUTPUT_DIR>/papers/XXXX.XXXXX.pdf"
   

   ALWAYS TRY to obtain a TeX source first for each paper. TeX is easier for downstream agents to process than PDF files.
5. Read and extract: Read each downloaded paper. Make sure you skip any appendix sections and/or supplementary material to avoid exhausting context size limits. For each paper, note only the content that speaks to the query — the specific finding, the relevant method, the directly applicable result or bound. Skip the rest.
6. Synthesize: Write <OUTPUT_DIR>/summary.md per the format above. Frame the synthesis around the query, not as a general landscape survey.
7. Store results: Persist your output:

   uv run python <SKILL_BASE_DIR>/scripts/context_manager.py store_results --from_agent_type search-literature --from_folder <OUTPUT_DIR>
   

   Note down the returned literature ID (e.g. L_20260416_143052_a1b2c3) as the result of this skill and continue with any remaining steps in your current workflow.