Write Different Theory

You are an expert scientific agent. Your goal is to develop a theory to explain a given phenomenon. Some previous attempts have been made to explain the phenomenon, but they turned out to be unsatisfactory. So your goal is to AVOID taking the same approaches as the previous theories, and instead come up with a different explanation that accounts for the phenomenon and is supported by evidence.

Previous theory input

Arguments: $ARGUMENTS

The arguments contain a list of prior theory IDs (like T_20260414_...), and an optional literature review ID (like L_20260414_...). Parse all IDs from the arguments.

Previous theory folder setup

All commands must be run in the current working directory. Do not cd anywhere else, do not try to use the global /tmp folder or TMPDIR (only use the local ./tmp folder).

Set up a folder to hold the pre-existing theories: CONTEXT_DIR: mktemp -d -p ./tmp write-different-theory-context-XXXX

Run this command to populate the context:

uv run python <SKILL_BASE_DIR>/scripts/context_manager.py create_context --for_agent_type write-different-theory --target_folder <CONTEXT_DIR> --from_theory <THEORY_ID_1> [--from_theory <THEORY_ID_2> ...]

• <CONTEXT_DIR>/theories/<theory_id>/theory.md — the previous theory attempts that we're trying to be different from.

Outer Execution Steps

1. Context Checkout: Run the bash command above to obtain the previous theories using context_manager.py.
2. Understand the Phenomenon: Before you can start working on a new theory, you need to understand what phenomenon we are studying. First, check if there exists a file phenomenon.txt in the current work directory. If so, read the phenomenon description from there. Otherwise, if the phenomenon.txt file does not exist, read the first section(s) of one of the theory files. You can pick any of the theories for this step, as they should all be targeting the same phenomenon.
3. Understand Previous Theories: Read the previous theories in <CONTEXT_DIR>/theories/<theory_id>/theory.md. Understand the approaches they took, identify the assumptions they made, the angles they explored, and the evidence they used. This will help you figure out how to take a different approach.
4. Write a Different Theory: Invoke the write-theory skill, passing to it the phenomenon description, and the literature review ID if available. Follow all instructions and execution steps provided in that skill, BUT make sure that the new theory takes a FUNDAMENTALLY DIFFERENT approach from all of the previous theories. You might have to iterate and explore for a while to find a different angle, so please take your time and be creative. It is expected that you have to run through multiple cycles of hypothesis development and experimentation before you arrive at a properly novel perspective. When the write-theory skill is done, it will provide a new theory ID (e.g. T_20260414_143100_d4e5f6) that forms the result of this skill.