Zoe Graphify
Zoe's code graph lives at:
/home/zoe/assistant/graphify-out/
Before broad code search, read:
/home/zoe/assistant/graphify-out/GRAPH_REPORT.md
Use Graphify for:
- Architecture questions.
- Finding god nodes and fragile modules.
- Understanding how files or concepts relate.
- Planning refactors across Zoe subsystems.
Local Search Fallback
If MCP graph tools are unavailable, search the generated report and graph:
cd /home/zoe/assistant
rg -i "<concept>" graphify-out/GRAPH_REPORT.md graphify-out/graph.json
Safe Refresh
Use only the full extract command:
cd /home/zoe/assistant && OPENAI_API_KEY=$(grep "^OPENAI_API_KEY=" .env | cut -d= -f2-) /home/zoe/.local/share/uv/tools/graphifyy/bin/graphify extract . --backend openai
Do not use:
graphify update .
graphify hook install
Both have inflated this repo's graph by ignoring exclusions.
Sanity Check
After refresh:
cd /home/zoe/assistant && python3 - <<'PY'
import json
from pathlib import Path
data = json.loads(Path("graphify-out/graph.json").read_text())
print("nodes", len(data.get("nodes", [])), "edges", len(data.get("links", data.get("edges", []))))
PY