Fix CI Failure

Fix a CI test failure from a GitHub PR or workflow run.

The user will provide a URL to a failing check run, PR checks page, or workflow run. Use $ARGUMENTS as the URL if provided.

Workflow

Step 0: Create progress tracker (MANDATORY — do this FIRST)

Before any investigation, create tasks for every workflow step using TaskCreate. These tasks are your checklist — mark each in_progress when starting and completed when done. Do NOT skip tasks. Complete them in order.

Create these tasks:

1. Identify the failure
2. Classify the failure type
3. Locate and understand the failing test
4. Trace the root cause
5. Apply the fix
6. Verify locally
7. Dimensional code review + test quality review
8. Summarize and wait for approval
9. Commit and PR (only after approval)

Step 1: Identify the failure

1. Use gh CLI to fetch PR and check run details. Prefer gh api and gh pr over WebFetch for GitHub URLs.
2. If no URL is provided, detect the current branch and find its open PR:

   gh pr list --head {branch} --json number,title,url,statusCheckRollup
   

3. List non-passing checks to find failures:

   gh pr view {number} --json statusCheckRollup --jq '.statusCheckRollup[] | select(.conclusion != "SUCCESS")'
   

4. Get the failing check annotations to find the exact test name and error message:

   gh api "repos/{owner}/{repo}/check-runs/{check_run_id}/annotations"
   

5. For workflow run failures, get failed job logs:

   gh run view --job {job_id} --log-failed
   

6. Check PR comments for gate details: CI gates (coverage gate, test count gate) post detailed PR comments with tables explaining exactly what failed. Always fetch these:

   gh api repos/{owner}/{repo}/issues/{pr_number}/comments --jq '.[] | select(.body | contains("gate")) | .body'
   

Step 2: Classify the failure type

Not all CI failures are test failures. Identify the category before diving into code:

• Test failure: A test assertion or error in a specific test class — go to Step 3.
• CI gate failure (coverage gate, test count gate): A policy check failed, not a test. These require understanding the gate's logic and why the PR's changes triggered it — go to Step 2a.
• Build failure: Compilation error, dependency resolution, etc. — read the build logs.
• Infrastructure failure: Timeout, runner issue, flaky network — may just need a re-run.

Step 2a: Diagnose CI gate failures

CI gates enforce policies on PRs. When a gate fails:

1. Read the gate's PR comment — it contains the specific data (uncovered lines, test count drops, surviving mutants).
2. Understand the gate's threshold — check CLAUDE.md and the gate script for exact rules.
3. Determine if the failure is expected or a bug:
   • Test Count Gate: Compare baseline vs current counts per module. A large drop in one module usually means tests were unintentionally excluded by build config changes (profile removal, surefire exclusions, module restructuring). Trace WHY those tests stopped running — don't just bypass the gate with [no-test-number-check] unless the user explicitly confirms the drop is intentional.
   • Coverage Gate: Check which lines are uncovered and whether existing tests should cover them.
4. The fix is often in build configuration, not in test code: When a PR changes Maven profiles, CI pipeline config, or surefire/failsafe plugin settings, tests may silently stop running. Look for:
   • <excludes> blocks in surefire/failsafe that were previously overridden by a profile the PR removed
   • Profile-gated test inclusion (e.g., combine.self="override" patterns that clear exclusions)
   • CI workflow changes that remove Maven profiles from the mvn command line

Step 3: Locate and understand the failing test

1. Find the test file using Glob (e.g., **/{TestClassName}.java).
2. Read the full test file to understand the test logic, especially the failing assertion.
3. Read the error message carefully — identify whether this is:
   • Timing/flakiness issue: off-by-one timestamps, race conditions, thread scheduling
   • Logic bug: wrong assertion, incorrect expected value
   • Environment issue: path separators, locale, OS-specific behavior
   • Actual regression: code change broke the test legitimately

Step 4: Trace the root cause

1. Read the production code exercised by the failing test.
2. Understand the full data flow from the code under test to the assertion.
3. Determine whether the fix should be in the test or in the production code:
   • If the test asserts a contract that the production code violates → fix the production code
   • If the test has an overly strict assertion that doesn't match the documented/intended behavior → fix the test
4. For build config issues: Trace the chain — which Maven profile was removed? What did it activate? Which module's pom.xml depended on it? Read the module's pom.xml fully to find exclusions, profile overrides, and plugin configurations.
5. Document your root cause analysis before making changes.

Step 5: Apply the fix

1. Make the minimal change that fixes the root cause.
2. Add or update comments explaining why the fix is correct (especially for tolerance values, timing adjustments, or non-obvious logic).
3. Update any method/class Javadoc that describes behavior affected by the fix.
4. Update CLAUDE.md if the fix changes documented behavior (e.g., which tests run by default, which profiles are needed).
5. Add Java assert statements generously in production code touched by the fix or exercised by new/changed tests. These must have zero production overhead (disabled by default in production JVMs). Good candidates:
   • Preconditions/postconditions at method entry/exit (e.g., assert index >= 0 : "negative index")
   • Invariant checks after state mutations (e.g., assert size == backingArray.length)
   • Null checks on values that should never be null by contract
   • Range checks on computed offsets, positions, and sizes
   • Consistency checks between redundant data structures
   • State checks in methods that assume a specific lifecycle stage (e.g., assert !closed) Do NOT add assertions that duplicate existing validation, have side effects, or are tautological. If the assertion condition is complex, extract it to a package-private helper method to get full JaCoCo coverage (see .claude/docs/architecture.md § Codebase-specific tips → "JaCoCo and Java assert statements").
6. Improve testability of internal classes when needed to write effective tests or add meaningful assertions. You may refactor classes under com.jetbrains.youtrackdb.internal (e.g., extract methods, increase visibility from private to package-private, add package-private accessors for state verification) but never modify the public API under com.jetbrains.youtrackdb.api. Any testability change must not alter the class's external behavior.
7. Run ./mvnw -pl {module} spotless:apply to fix formatting.

Step 6: Verify locally

1. Run the failing test to confirm the fix:

   ./mvnw -pl {module} clean test -Dtest={TestClass}
   

2. For gate failures, run the full module test suite to verify counts:

   ./mvnw -pl {module} clean test
   

3. If the test requires a suite runner (e.g., GremlinProcessRunner, graph provider), note that it cannot be run standalone — verify the code change is correct by inspection and rely on CI.
4. Run ./mvnw -pl {module} spotless:check to ensure formatting compliance.

Step 7: Dimensional code review + test quality review (MANDATORY GATE)

BLOCKING: Do NOT proceed to Step 8 (summarize) until this step is fully complete. Skipping this step is never acceptable — it exists to catch bugs in the fix itself before presenting to the user.

If you changed any code or added/fixed/changed any tests, run a dimensional code review and test quality review. This step is mandatory whenever code or tests were modified.

1. Triage — Categorize changes and select relevant agents

   Before launching agents, perform a quick triage pass over the diff to determine which review dimensions are actually relevant. This avoids wasting time on agents that have nothing meaningful to review.

   1a: Categorize each changed file

   Scan the diff and assign one or more categories to every changed file (production, test, and other):

   Category	Signals
   storage-engine	Files in storage/, cache/, wal/, StorageComponent subclasses, page read/write logic, DiskStorage, WriteCache, ReadCache, LogSequenceNumber, double-write log
   concurrency	synchronized, Lock, Atomic*, volatile, StampedLock, ReentrantLock, thread pools, ConcurrentHashMap, CompletableFuture, shared mutable state, @GuardedBy, ConcurrentTestHelper, CountDownLatch, CyclicBarrier
   crash-durability	WAL operations, crash simulation, durable StorageComponent recovery, page corruption handling, transaction atomicity under failure, LogSequenceNumber manipulation, double-write log, Java assert statements in production code
   index-data-structures	Files in index/, B-tree, hash index, SBTree, CellBTree, histogram, IndexEngine
   network-server	Files in server/, driver/, Gremlin Server, protocol handling, TLS/SSL, authentication, session management
   sql-query	Files in sql/ (excluding parser/), query execution, command handlers
   gremlin	Files in gremlin/, traversal steps, YTDBGraph* classes, TinkerPop integration
   public-api	Files in com.jetbrains.youtrackdb.api, YourTracks, YouTrackDB interface
   serialization	Record serializers, binary format, property map encoding/decoding
   configuration	GlobalConfiguration, config parameters, system properties
   tests-only	Changes exclusively in test files with no production code changes
   build-config	pom.xml, CI workflows, Maven profiles, Docker configs
   docs-only	Markdown, documentation, comments-only changes

   A file can belong to multiple categories.

   1b: Select code review agents based on categories

   Agent	Launch when ANY of these categories are present
   review-code-quality	Always launched (unless docs-only is the ONLY category)
   review-bugs	concurrency, storage-engine, index-data-structures, network-server, serialization, gremlin, sql-query
   review-concurrency	concurrency is present on any changed file
   review-crash-safety	crash-durability
   review-security	network-server, public-api, sql-query, serialization, configuration, OR when new dependencies are added in pom.xml
   review-performance	storage-engine, index-data-structures, concurrency, serialization, sql-query, gremlin

   review-bugs owns sequential-reasoning defects (logic, null safety, leaks, RID handling, state-machine / lifecycle); review-concurrency owns interleaving-reasoning defects (races, visibility / publication, lock-ordering / deadlock, compound-op atomicity) and fires only on the concurrency category.

   1c: Select test quality agents based on categories

   Agent	When to launch
   review-test-quality	Always (unless docs-only or build-config are the ONLY categories) — carries both the behavior and completeness sub-protocols, both the TB and TC prefixes
   review-test-structure	Any test files are changed
   review-test-concurrency	concurrency, OR production code touches shared mutable state / threading primitives even if no concurrency tests exist yet
   review-test-crash-safety	crash-durability

   1d: Log your triage decision

   Before launching agents, output a brief triage summary:

   ### Triage Summary
   - **Categories detected**: storage-engine, concurrency
   - **Code review agents selected**: review-code-quality, review-bugs, review-concurrency, review-performance
   - **Code review agents skipped**: review-crash-safety (no crash-durability category), review-security (no network/API/SQL/config/dependency changes)
   - **Test quality agents selected**: review-test-quality, review-test-structure, review-test-concurrency
   - **Test quality agents skipped**: review-test-crash-safety (no crash-durability category)
   

   1e: Edge cases

   • If all categories are docs-only: Skip all agents. Report that only documentation changed and no code review is needed.
   • If all categories are build-config: Launch review-code-quality (to check for misconfigurations) and review-security (to check for dependency changes).
   • If all categories are tests-only: Launch review-code-quality, review-bugs (plus review-concurrency if the concurrency category is present) for code agents, and review-test-quality, review-test-structure for test agents.
   • If in doubt about whether an agent is relevant: launch it. False positives are better than false negatives.

2. Launch selected review agents in parallel (fresh sub-agents):

   Each agent receives the same context:

   ## Review Target
   CI fix: {brief description of the fix}
   Reviewing: changes on current branch vs develop
   
   ## Changed Files
   {git diff develop...HEAD --name-only}
   
   ## Skip These Files (generated code)
   - core/.../sql/parser/*, generated-sources/*, Gremlin DSL
   
   ## Tooling
   Use **mcp-steroid PSI find-usages / find-implementations / type-
   hierarchy via `steroid_execute_code`, not grep**, for any reference-
   accuracy question about a Java symbol in this fix (callers/overrides
   /usages of a method, field, class, or annotation; whether the fix
   leaves stale references; whether a new helper duplicates an existing
   one; whether a test exercises the same code path the production fix
   touches). Grep is acceptable for filename globs, unique string
   literals, and orientation reads, but the load-bearing answer behind
   a finding must be PSI-backed when the mcp-steroid MCP server is
   reachable per the SessionStart hook (`steroid_list_projects` once at
   the start confirms the open project matches the working tree). Fall
   back to grep with an explicit reference-accuracy caveat in the
   finding only when mcp-steroid is unreachable. See
   `CLAUDE.md` § MCP Steroid → "Grep vs PSI — when to switch"
   for the full routing rule.
   
   ## Diff
   {git diff develop...HEAD}
   

   Set subagent_type to the agent name and model to opus for each.

3. Synthesize findings: After all selected agents complete, deduplicate across dimensions. Prioritize: blocker > should-fix > suggestion.

4. Address all blocker and should-fix findings:

   • Fix code quality, bug, safety, security, and performance issues
   • Add missing behavior assertions flagged by the test quality reviewer
   • Add corner case tests for gaps identified
   • Add recommended assert statements in production code (zero-overhead)
   • Fix any test isolation, readability, or precision issues

5. After applying fixes, run ./mvnw -pl {module} spotless:apply and re-run the affected tests to confirm they pass.

6. Re-run only the agent(s) with open findings on the updated changes.

7. Repeat steps 4-6 until no blocker/should-fix findings remain.

   • A maximum of 3 iterations. If after 3 rounds there are still critical issues, present the remaining findings to the user and ask for guidance.

Step 8: Summarize and wait for approval

Present to the user:

• Problem: The exact failure (test name, error message, CI link)
• Root cause: Why it failed (detailed technical explanation)
• Fix: What was changed and why
• Decision rationale: Why the fix is in the test vs production code vs build config

Do NOT commit or push until the user approves.

Step 9: Commit and PR (only after approval)

1. Commit following the project's git conventions (YTDB-NNN prefix, imperative summary).
2. Push and create a PR targeting develop with:
   • Summary bullets explaining the fix
   • Motivation section with a link to the failing CI run
   • Test plan checklist

Important Rules

• Always use gh CLI for GitHub API calls, not WebFetch.
• Read before editing: Always read the full test file and relevant production code before proposing a fix.
• Minimal changes: Fix the root cause, don't refactor surrounding code.
• Explain tolerances: If adding numeric tolerances (timing, precision), justify the exact value in a comment.
• Check for similar issues: After fixing one assertion, scan the test for other assertions that might have the same vulnerability.
• Don't blindly relax assertions: Understand why the assertion fails before loosening it. A failing assertion might indicate a real bug.
• Don't blindly bypass CI gates: When a gate like test-count-gate fails, investigate WHY tests disappeared before suggesting [no-test-number-check] or similar bypasses. The gate may be catching a real problem (tests silently excluded by build config changes).
• Build config changes have test side effects: When a PR modifies Maven profiles, CI workflows, or plugin configurations, always check whether any module's test execution depends on the removed/changed config. Look for <excludes> with profile overrides, failsafe configurations gated by profiles, and CI workflow mvn command-line profile flags.
• Respect the project's pre-commit verification workflow: Run tests, check formatting, verify coverage as described in CLAUDE.md.
• NEVER run multiple test processes simultaneously: Always wait for one ./mvnw test or ./mvnw verify invocation to finish before starting another. Running tests in parallel across separate Maven processes causes classloading errors, database file locking conflicts, and false test failures. This includes any combination of unit tests, integration tests, and coverage runs.
• Add assert statements generously: When fixing or testing production code, add Java assert statements for invariants, preconditions, postconditions, and consistency checks. These cost nothing in production (assertions disabled by default) but catch bugs during development and testing. Do not add assertions that duplicate existing checks or have side effects.
• Internal classes may be refactored for testability: Classes under com.jetbrains.youtrackdb.internal can be modified to improve testability (e.g., extract methods, widen visibility to package-private, add state-inspection accessors). Never modify the public API under com.jetbrains.youtrackdb.api.
• Dimensional review is mandatory: After making any code or test changes, triage the diff to select relevant code review and test quality agents, launch selected agents in parallel, synthesize findings, and iterate until no blocker/should-fix findings remain. Do not skip this step. Do not launch agents for irrelevant dimensions — use the category-to-agent mapping to decide.

YouTrackDB-Specific Knowledge

CI Gates

• Test Count Gate: Compares per-module test counts against baseline in git notes (refs/notes/test-counts). Fails if any module drops >5%. PR comment contains the per-module comparison table. Bypass with [no-test-number-check] in PR title (only for intentional restructuring).
• Coverage Gate: 85% line / 70% branch on changed code. Uses coverage-gate.py. PR comment has per-file tables.

Common Patterns

• Profile-gated tests: Some modules exclude heavyweight tests by default and use ci-integration-tests profile with <excludes combine.self="override"/> to include them. If CI stops activating that profile, those tests silently disappear.
• Embedded module Cucumber tests: EmbeddedGraphFeatureTest runs ~1900 TinkerPop Gremlin scenarios. Requires 4GB heap. Previously gated by ci-integration-tests profile, now runs by default.
• Surefire vs Failsafe: Unit tests use surefire (test phase), integration tests use failsafe (verify phase with -P ci-integration-tests). Test count gate counts surefire results.

Useful Commands

# Check PR gate comments
gh api repos/JetBrains/youtrackdb/issues/{pr}/comments --jq '.[] | select(.body | contains("gate")) | .body'

# Run single module tests
./mvnw -pl {module} clean test -Dtest={TestClass}

# Run with disk storage (as CI does)
./mvnw -pl {module} clean test -Dyoutrackdb.test.env=ci