How do I install the CLI Cytoscnpy skill?

Run npx skillmds@latest add jr2804/cli-cytoscnpy in your terminal (requires Node.js), paste this page's agent-chat prompt into Claude, Cursor, or any MCP-connected agent, or download the SKILL.md file and copy it into your agent's skills directory.

Is CLI Cytoscnpy safe to use?

This skill has not completed SkillMD's automated safety review yet. Capability flags: docs only. SkillMD never runs a skill's scripts for you; review the SKILL.md before installing.

Which AI agents work with CLI Cytoscnpy?

This skill is tagged as working with Claude Code, Claude.ai, OpenAI Codex. SKILL.md is an open format, so most agents that read a skills directory can load it too.

Is CLI Cytoscnpy free to use?

Yes. Installing skills from SkillMD is free, and the skill stays under its author's original license.

Who published CLI Cytoscnpy?

jr2804 (@jr2804) published this skill. Their other Agent Skills are listed on their SkillMD profile.

CLI Cytoscnpy by jr2804 — Agent Skill

Name: CLI Cytoscnpy
Rating: 4.5 (4 reviews)
Author: jr2804

CLI Cytoscnpy

CLI tool for CytoScnPy - code metrics analysis for Python projects. Use when running code quality scans, calculating cyclomatic complexity, Halstead metrics, maintainability index, or generating project statistics. Triggers on: cytoscnpy commands, code metrics analysis, complexity reports, maintainability scoring, or MCP server setup for LLM integration.

jr2804 a2c29b3 3 files · 3.2 KB Updated Sep 10, 2026

File contents

CytoScnPy CLI

Code metrics analysis tool for Python projects. Calculates LOC, complexity, Halstead metrics, and maintainability.

Commands

# Raw metrics (LOC, LLOC, SLOC, Comments, Blank)
cytoscnpy raw [OPTIONS] <PATH>

# Cyclomatic Complexity
cytoscnpy cc [OPTIONS] <PATH>

# Halstead Metrics
cytoscnpy hal [OPTIONS] <PATH>

# Maintainability Index
cytoscnpy mi [OPTIONS] <PATH>

# Full project statistics report
cytoscnpy stats [OPTIONS] <PATH>

# Per-file metrics table
cytoscnpy table [OPTIONS] <PATH>

# MCP server for LLM integration
cytoscnpy mcp-server

# Initialize config (.cytoscnpy.toml)
cytoscnpy init

Quality Gates

Use strict flags to fail CI when thresholds are exceeded (exit code 1):

cytoscnpy raw --max-loc 500 --max-complexity 15 <PATH>

Configuration

Create .cytoscnpy.toml in project root, or add [tool.cytoscnpy] to pyproject.toml.

cytoscnpy init  # scaffolds config file

MCP Server

Starts an MCP server for LLM integration. Requires the standalone CLI build (not the Python package).

cytoscnpy mcp-server

Reference

See references/cli-reference.md for full option details.

Frequently asked questions