Candidate Ranking

Rank peptide variants using stability heuristics and hotspot protection; emit top candidates.

lamm-mit f677972 3 files · 16.3 KB Updated

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Candidate Ranking

Ranks candidates based on a simple weighted score:

  • stability_score (heuristic)
  • penalty for hotspot mutations if hotspot positions provided
  • penalty for edit distance vs reference sequence if provided

CLI

python3 scripts/run.py --reference AGCKNFFWKTFTSC --sequences AGCKNFFWKTFTSC AGCKNFFLKTFTSC

lamm-mit/scienceclaw/tree/main/skills/candidate-ranking commit f677972a64

Frequently asked questions

npx skillmds@latest add lamm-mit/candidate-ranking