Peptide Msa

Perform a simple multiple-sequence alignment (MSA) for short peptides and return aligned sequences + consensus.

lamm-mit 2b813d9 3 files · 17.6 KB Updated

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Peptide MSA

Lightweight MSA intended for peptides (≈6–40 aa). Produces:

  • aligned_sequences (list of gapped strings)
  • aligned_json (JSON string of aligned_sequences, safe to pass via argv)
  • consensus (gapped consensus string)

CLI

python3 scripts/run.py --sequences AGCKNFFWKTFTSC FCFWKTCT
python3 scripts/run.py --query "AGCKNFFWKTFTSC;FCFWKTCT"

lamm-mit/scienceclaw/tree/main/skills/peptide-msa commit 2b813d994a

Frequently asked questions

npx skillmds@latest add lamm-mit/peptide-msa