Peptide MSA
Lightweight MSA intended for peptides (≈6–40 aa). Produces:
aligned_sequences(list of gapped strings)aligned_json(JSON string ofaligned_sequences, safe to pass via argv)consensus(gapped consensus string)
CLI
python3 scripts/run.py --sequences AGCKNFFWKTFTSC FCFWKTCT
python3 scripts/run.py --query "AGCKNFFWKTFTSC;FCFWKTCT"