How do I install the Graphify skill?

Run npx skillmds@latest add lensetek/graphify in your terminal (requires Node.js), paste this page's agent-chat prompt into Claude, Cursor, or any MCP-connected agent, or download the SKILL.md file and copy it into your agent's skills directory.

Is Graphify safe to use?

This skill has not completed SkillMD's automated safety review yet. SkillMD never runs a skill's scripts for you; review the SKILL.md before installing.

Which AI agents work with Graphify?

This skill is tagged as working with Claude Code, Claude.ai, OpenAI Codex. SKILL.md is an open format, so most agents that read a skills directory can load it too.

Is Graphify free to use?

Yes. Installing skills from SkillMD is free, and the skill stays under its author's original license.

Who published Graphify?

lensetek (@lensetek) published this skill. Their other Agent Skills are listed on their SkillMD profile.

Graphify by lensetek — Agent Skill

Name: Graphify
Author: lensetek

Graphify

Graphify transforms entire codebases into persistent, queryable Knowledge Graphs and provides an MCP server interface for structural code reasoning, dependency mapping, graph state inspection, and switching between codebase graphs.

lensetek c75fce3 3.4 KB Updated Sep 17, 2026

File contents

Graphify Knowledge Graph & MCP Skill

graphify is an on-device, deterministic codebase analysis engine powered by Tree-sitter AST parsing. It converts source code, SQL schemas, documentation, and metadata into a queryable Knowledge Graph (graph.json) and visualization (graph.html).

🚀 Core Capabilities

Deterministic AST Parsing: Maps actual code relationships (function calls, class inheritance, module imports, schema keys) rather than relying solely on semantic vector search.
Persistent Knowledge Graph: Generates /output/graphify/graph.json and a human-readable /output/graphify/GRAPH_REPORT.md.
Interactive Graph Inspector: Inspect current graph nodes, edges, complexity metrics, or switch context between multiple indexed targets in /output/graphify/.
MCP Server Integration: Exposes tools for AI assistants (query_graph, get_node, get_neighbors, shortest_path).

🛠️ CLI Commands & Usage

1. Auto-Installation & Setup

If graphify is not yet installed on the system, run:

uv tool install "graphifyy[mcp]"
# or
pipx install "graphifyy[mcp]"

2. Generating a Knowledge Graph

To index the current workspace and save results into /output/graphify/:

uv tool run --from "graphifyy[mcp]" graphify . --output-dir ./output/graphify

3. Graph Inspector & State Switcher

To inspect active graph status or list indexed graphs:

# Check if active graph exists
Test-Path ./output/graphify/graph.json

# Read graph summary report
Get-Content ./output/graphify/GRAPH_REPORT.md -Head 50

4. Running the MCP Server

To launch the Graphify MCP server on port 7812:

uv tool run --from "graphifyy[mcp]" graphify mcp serve --port 7812

🔌 Exposed MCP Tools

When the Graphify MCP Server is running, agents can utilize the following tools:

Tool	Purpose	Example Query
`query_graph`	Search nodes & relationships matching keywords or queries	`query_graph("authentication flow")`
`get_node`	Retrieve complete details of a specific function, class, or file node	`get_node("script.js:initApp")`
`get_neighbors`	List upstream/downstream callers & imports of a node	`get_neighbors("AGENTS.md")`
`shortest_path`	Find dependency path between two components	`shortest_path("index.html", "graphify")`

📁 Output & Obsidian Vault Integration

All deliverables are saved under /output/graphify/ in compliance with SkillForge project guardrails:

GRAPH_REPORT.md: Markdown summary containing frontmatter metadata and Obsidian Wikilinks ([[Note Title]]).
graph.html: Standalone D3/Vis.js interactive web graph viewer.
graph.json: Structural JSON representation for programmatic agent context.

🛡️ Fallback & Recovery Protocol

If graphifyy fails to run or encounters syntax errors on unsupported languages:

Fall back to standard AST parsing or structural ripgrep (grep_search).
Log error details to /output/graphify/error.log.
Notify user and offer automatic re-installation via uv tool install --force "graphifyy[mcp]".

---name: graphifydescription: Graphify transforms entire codebases into persistent, queryable Knowledge Graphs and provides an MCP server interface for structural code reasoning, dependency mapping, graph state inspection, and switching between codebase graphs.---# Graphify Knowledge Graph & MCP Skill`graphify` is an on-device, deterministic codebase analysis engine powered by Tree-sitter AST parsing. It converts source code, SQL schemas, documentation, and metadata into a queryable **Knowledge Graph** (`graph.json`) and visualization (`graph.html`).---## 🚀 Core Capabilities1. **Deterministic AST Parsing:** Maps actual code relationships (function calls, class inheritance, module imports, schema keys) rather than relying solely on semantic vector search.2. **Persistent Knowledge Graph:** Generates `/output/graphify/graph.json` and a human-readable `/output/graphify/GRAPH_REPORT.md`.3. **Interactive Graph Inspector:** Inspect current graph nodes, edges, complexity metrics, or switch context between multiple indexed targets in `/output/graphify/`.4. **MCP Server Integration:** Exposes tools for AI assistants (`query_graph`, `get_node`, `get_neighbors`, `shortest_path`).---## 🛠️ CLI Commands & Usage### 1. Auto-Installation & SetupIf `graphify` is not yet installed on the system, run:```powershelluv tool install "graphifyy[mcp]"# orpipx install "graphifyy[mcp]"```### 2. Generating a Knowledge GraphTo index the current workspace and save results into `/output/graphify/`:```powershelluv tool run --from "graphifyy[mcp]" graphify . --output-dir ./output/graphify```### 3. Graph Inspector & State SwitcherTo inspect active graph status or list indexed graphs:```powershell# Check if active graph existsTest-Path ./output/graphify/graph.json# Read graph summary reportGet-Content ./output/graphify/GRAPH_REPORT.md -Head 50```### 4. Running the MCP ServerTo launch the Graphify MCP server on port 7812:```powershelluv tool run --from "graphifyy[mcp]" graphify mcp serve --port 7812```---## 🔌 Exposed MCP ToolsWhen the Graphify MCP Server is running, agents can utilize the following tools:| Tool | Purpose | Example Query || :--- | :--- | :--- || `query_graph` | Search nodes & relationships matching keywords or queries | `query_graph("authentication flow")` || `get_node` | Retrieve complete details of a specific function, class, or file node | `get_node("script.js:initApp")` || `get_neighbors` | List upstream/downstream callers & imports of a node | `get_neighbors("AGENTS.md")` || `shortest_path` | Find dependency path between two components | `shortest_path("index.html", "graphify")` |---## 📁 Output & Obsidian Vault IntegrationAll deliverables are saved under `/output/graphify/` in compliance with SkillForge project guardrails:- **`GRAPH_REPORT.md`**: Markdown summary containing frontmatter metadata and Obsidian Wikilinks (`[[Note Title]]`).- **`graph.html`**: Standalone D3/Vis.js interactive web graph viewer.- **`graph.json`**: Structural JSON representation for programmatic agent context.---## 🛡️ Fallback & Recovery ProtocolIf `graphifyy` fails to run or encounters syntax errors on unsupported languages:1. Fall back to standard AST parsing or structural `ripgrep` (`grep_search`).2. Log error details to `/output/graphify/error.log`.3. Notify user and offer automatic re-installation via `uv tool install --force "graphifyy[mcp]"`.

Frequently asked questions