Audit Links

🔍 Audit Links Skill

Fast audit of vault structure to catch:

• Orphan papers (not linked to any project)
• Orphan projects (not linked to any MOC)
• Broken bidirectional links (paper→project without reciprocal project→paper)
• Forbidden concept links (e.g., [[Attention Mechanism]])
• Papers linking directly to MOCs (forbidden)
• Malformed wiki links

CRITICAL RULES

Vault constraints (non-negotiable):

1. Every paper in Reading/ must link to ≥1 project in Projects/
2. Every project in Projects/ must link to ≥1 MOC in MOCs/
3. Bidirectional links: If paper→project exists, project→paper must exist
4. Papers never link directly to MOCs
5. Papers link only to projects and other papers
6. Concept/method/technique links forbidden (e.g., [[Transformer]], [[Attention Mechanism]])

WORKFLOW

1. Get audit scope

Read .claude/vault_maintanance.md and note the audit_links: timestamp.

Default: incremental scan — only files modified after the audit_links: timestamp. Use find Reading/ Projects/ MOCs/ -newer <reference_file> to scope the file set. To use a reference file, write the timestamp as a temp file: touch -t YYYYMMDDHHMI /tmp/audit_ref && find ... -newer /tmp/audit_ref

Only run a full scan if:

• The user explicitly requests it ("full audit", "scan everything")
• No audit_links: timestamp exists yet

2. Run lightweight scan

For papers in Reading/:

• Extract all [[wiki links]] from each paper
• Verify each link points to a project in Projects/ or paper in Reading/
• Flag: Papers with zero project links (orphan papers)
• Flag: Papers linking directly to MOCs/ files (forbidden)
• Flag: Concept links like [[Attention]], [[Transformers]] (forbidden)

For projects in Projects/:

• Extract all [[wiki links]] from each project
• Verify each links to MOC or paper
• Flag: Projects with zero MOC links (orphan projects)

For bidirectional consistency:

• For each paper→project link found: verify reciprocal project→paper link exists
• Flag: Missing reciprocal links

3. Compile report

Group findings by violation type:

1. Orphan papers (not linked to any project)
2. Orphan projects (not linked to any MOC)
3. Broken bidirectional links (paper→project without project→paper)
4. Forbidden concept links (in papers)
5. Forbidden paper→MOC links
6. Malformed links (broken wiki syntax)

Include:

• File name
• Problematic link/content
• Suggested fix

4. Present findings

• Show violations by category
• Prioritize by severity (orphans > broken bidirectional > concept links)
• Offer fixes: "Should I remove this link?" / "Should I add reciprocal link?"

5. Apply fixes

Only with user approval:

• Remove orphan papers/projects (ask first)
• Fix broken bidirectional links
• Remove forbidden concept links
• Remove paper→MOC links

6. Update vault_maintanance.md

After completing the audit (regardless of whether fixes were applied):

• Run date via Bash to get the current system time
• Read .claude/vault_maintanance.md
• Update audit_links: line to current date and time in format DD-MM-YYYY HH:MM
• Reset papers_since_audit_links: to 0
• Reset projects_since_audit_links: to 0
• Write the updated file

Example update:

audit_links: 10-02-2026 14:35

TOKEN EFFICIENCY

Optimizations:

• Use grep patterns to find links fast: \[\[.*\]\]
• Don't read full file contents unless necessary
• Process files by type (papers, projects, MOCs)
• Early exit on first issue per file
• Report summaries, not line-by-line details

Avoid:

• Reading every file in full (extract links only)
• Deep analysis of content (only validate structure)
• Redundant checks across multiple passes

OUTPUT RULES

• Concise summary first
• Group violations by type
• Each violation: file name + issue + suggested fix
• No prose, bullets only
• Fast scan report (~100-200 tokens)

SELF-CHECK

✅ Did I scan all papers for orphans? ✅ Did I check all projects for MOC links? ✅ Did I verify bidirectional consistency? ✅ Did I identify concept links in papers? ✅ Did I find paper→MOC direct links? ✅ Report grouped by violation type? ✅ Did I get user approval before fixing? ✅ Did I update vault_maintanance.md with current timestamp and reset counters?