Cellranger Processor

Cell Ranger skill for 10X Genomics single-cell data processing

majiayu000 cc64c31 2 files · 1.7 KB Updated 567 repo stars

File contents

CellRanger Processor Skill

Purpose

Provide Cell Ranger capabilities for 10X Genomics single-cell data processing including demultiplexing and alignment.

Capabilities

  • BCL to FASTQ conversion
  • Cell barcode demultiplexing
  • UMI counting
  • Feature barcode processing
  • Aggregate sample analysis
  • Loupe Browser file generation

Usage Guidelines

  • Configure sample sheets accurately
  • Validate cell counts against expectations
  • Review QC metrics from web summary
  • Aggregate samples for combined analysis
  • Generate Loupe files for visualization
  • Document reference versions

Dependencies

  • Cell Ranger
  • STARsolo

Process Integration

  • Single-Cell RNA-seq Analysis (scrnaseq-analysis)
  • Spatial Transcriptomics Analysis (spatial-transcriptomics)

majiayu000/claude-skill-registry-data/tree/main/data/cellranger-processor commit cc64c313aa

Frequently asked questions

npx skillmds add majiayu000/cellranger-processor