Debug PDF

Debug PDF Skill

Automate the lifecycle of an extraction failure: Failure -> Analysis -> Fixture -> Test

Why This Exists

Extractors (Marker, Surya, Camelot) break on specific PDF patterns (scanned pages, TOC dots, cursed fonts, watermarks). Manually reproducing these bugs is slow. /debug-pdf fast-tracks this by:

1. Downloading the failed artifact
2. Identifying structural "traps" (TOC dots, watermarks, ligatures, etc.)
3. Generating minimal reproduction fixtures using fixture-tricky
4. Combining multiple failures into a single stress test PDF

Quick Start

# Analyze a single failed URL
./run.sh analyze "https://example.com/broken.pdf"

# Process multiple failures in batch
./run.sh batch failed_urls.txt --output report.json

# Combine all fixtures into one stress test PDF
./run.sh combine stress_test.pdf --max-pages 20

# List known failure patterns
./run.sh list-patterns

# Check session status
./run.sh status

Commands

analyze

Analyze a single PDF URL and optionally generate a reproduction fixture.

./run.sh analyze "https://example.com/broken.pdf"
./run.sh analyze "https://example.com/broken.pdf" --no-repro
./run.sh analyze "https://example.com/broken.pdf" --send-inbox

batch

Process multiple URLs from a file (one URL per line).

# Create URL file
echo "https://example.com/doc1.pdf" > failed.txt
echo "https://example.com/doc2.pdf" >> failed.txt

# Run batch analysis
./run.sh batch failed.txt --output analysis.json --send-inbox

combine [output.pdf]

Merge all generated fixtures into a single stress test PDF.

./run.sh combine stress_test.pdf --max-pages 15

list-patterns

Display all known failure patterns and their descriptions.

status

Show current debug session status and fixture count.

Detected Patterns (14/17 = 82%)

Structural (4/4 detected):

• scanned_no_ocr - Scanned image PDF without text layer
• sparse_content_slides - Slide deck with minimal text per page
• multi_column - Complex multi-column layouts (via text block analysis)
• watermarks - Text obscured by watermark overlays

Encoding (5/5 detected):

• toc_noise - Table of contents with dotted leaders
• metadata_artifacts - Print metadata (Jkt/PO/Frm) in content
• invisible_chars - Zero-width spaces, direction markers
• curly_quotes - Windows-1252 encoded smart quotes
• ligatures - fi/fl/ff ligature characters

Layout (4/4 detected):

• footnotes_inline - Footnotes merged into body text (via font size/position heuristics)
• split_tables - Tables spanning multiple pages (flag only, no merging)
• header_footer_bleed - Headers/footers mixed into content (via PyMuPDF4LLM Layout)
• diagram_heavy - Many embedded diagrams/charts

Network (1/3 detected locally):

• archive_org_wrap - Wayback Machine URL wrapper (detected via URL pattern)
• auth_required - Marketing platform cookie gates (network-level, not detectable locally)
• access_restricted - Government/defense access controls (network-level, not detectable locally)

Workflow Integration

When memory or extractor agent reports failures:

1. Collect failed URLs in a text file
2. Run batch analysis: ./run.sh batch failed_urls.txt
3. Review pattern distribution in output
4. Generate combined stress test: ./run.sh combine stress_test.pdf
5. Add stress test to extractor's regression suite
6. New patterns get added to fixture-tricky for future testing

Data Storage

All data is stored in ~/.pi/debug-pdf/:

• sessions/ - Individual analysis session JSON files
• fixtures/ - Generated reproduction PDFs
• last_analysis.json - Quick reference to most recent analysis

Dependencies

• pymupdf (fitz) - PDF structure analysis
• pymupdf4llm - ML-based layout detection for header/footer bleed
• httpx - HTTP downloads with redirect handling
• typer - CLI interface
• loguru - Logging

Sibling skills used:

• fetcher - Robust URL downloading with Playwright support
• fixture-tricky - Adversarial PDF generation
• extractor - Verification of generated fixtures
• agent-inbox - Cross-agent notifications

Testing

# Run test suite (24 tests)
python -m pytest tests/test_debug_pdf.py -v

# Generate test fixtures only
python tests/test_debug_pdf.py

Test coverage includes:

• URL validation (security hardening)
• Wayback URL detection and extraction
• Multi-column layout detection
• Header/footer bleed detection
• Split table detection
• Footnote detection
• Full PDF analysis integration

Sanity Check

./sanity.sh

Verifies:

• Python dependencies installed
• Sibling skills available
• Data directory accessible
• CLI commands functional