Setup Project

Setup Project Skill

Explore a target project and generate tailored recipes and AutoSkillit config through an interactive, workflow-first UX.

When to Use

• User wants to onboard a new project to AutoSkillit
• User passes a project path and wants ready-to-use recipes
• User has no .autoskillit/config.yaml and wants a starting point

Arguments

/autoskillit:setup-project {project_dir}

• project_dir — Absolute path to the target project to onboard

Critical Constraints

NEVER:

• Modify any files in the target project without user confirmation at the summary gate
• Run commands that change the target project
• Create files outside temp/setup-project/ directory (until the summary gate)
• Assume test framework — detect it from evidence
• Use Makefile or make in generated examples — use Taskfile/task if a task runner is needed
• Suggest reset_guard_marker config — that's a workspace concern, not project setup
• Include install instructions or "Getting Started" sections — user is already running the skill
• Hardcode base_branch = main — detect the current branch

ALWAYS:

• Read the target project using Glob, Read, and Grep — no shell commands against target
• Use model: "sonnet" when spawning all subagents via the Task tool
• Detect language, test framework, build system, and CI from actual files
• Present candidate workflows one by one for user approval before generating scripts
• Show a summary confirmation gate before writing anything to disk
• Use the two-directory model (project_dir + work_dir) in generated recipes

Workflow

Step 0: Parse Arguments and Prompt

Extract project_dir from the prompt. Invocation: /autoskillit:setup-project {project_dir}. If missing, abort: "Usage: /autoskillit:setup-project /absolute/path/to/project". Resolve to absolute path. Verify the directory exists.

Validate project_dir before exploring: Confirm {project_dir} exists and is a git repository before launching subagents:

ls "{project_dir}"
git -C "{project_dir}" rev-parse --is-inside-work-tree

If the directory does not exist or is not a git repo, stop immediately and report the error to the user. Do not assume any internal paths (src/, tests/, etc.) exist until the directory structure has been verified in Step 1.

Then prompt the user:

"Would you like me to also scan your Claude Code conversation history for this project to identify recurring patterns that could become recipes?"

Store the answer for Step 1.

Step 1: Explore Target Project (Parallel Subagents)

Launch parallel Explore subagents against project_dir. If the user opted into history mining, include Subagent E in the same parallel launch:

Subagent A — Language & Build System:

• Read pyproject.toml, setup.py, package.json, go.mod, Cargo.toml, build.gradle, pom.xml
• Check for Taskfile.yml, justfile
• Detect primary language(s) and package manager
• Detect worktree setup command: if Taskfile.yml has install-worktree task use ["task", "install-worktree"]; for Python+uv use ["uv", "venv", ".venv", "&&", "uv", "pip", "install", "-e", ".[dev]", "--python", ".venv/bin/python"]; for Python+pip use ["python", "-m", "venv", ".venv", "&&", ".venv/bin/pip", "install", "-e", ".[dev]"]; for Node npm use ["npm", "install"]; for Node pnpm use ["pnpm", "install"]; for Rust use ["cargo", "fetch"]; for Go use ["go", "mod", "download"]

Subagent B — Test Framework:

• Python: pytest.ini, pyproject.toml [tool.pytest], conftest.py, tests/
• JS/TS: jest.config.*, vitest.config.*, .mocharc.*
• Go: *_test.go files
• Rust: #[test] in source files
• Determine the exact test command

Subagent C — Project Structure & Critical Paths:

• Glob source directories (src/, lib/, pkg/, app/, internal/)
• Identify schema definitions, migrations, core config, API routes
• These become candidates for classify_fix.path_prefixes
• Detect monorepo workspaces: pnpm-workspace.yaml, Cargo.toml [workspace], go.work, Nx project.json, Lerna lerna.json
• Read README.md (first 100 lines) for project description

Subagent D — Existing AutoSkillit Config:

• Check for .autoskillit/config.yaml — read if present
• Check for .autoskillit/recipes/ — list any recipes
• Check for CLAUDE.md — extract project constraints
• Check for .autoskillit/workflows/ — list any custom workflows

Subagent E — Current Git Branch:

• Run git -C {project_dir} branch --show-current
• This becomes the default base_branch in generated scripts

Subagent F+ — Conversation History Mining (only if user opted in):

Claude Code stores conversation history at ~/.claude/projects/<encoded-path>/ as JSONL files (one per session). The path encoding replaces / and _ with - (e.g., /home/user/my_project -> -home-user-my-project).

1. Compute the encoded directory name from project_dir
2. List all .jsonl files in ~/.claude/projects/<encoded-name>/, including subagent files in <session-uuid>/subagents/agent-*.jsonl
3. Sort by modification time (newest first)
4. Divide into batches of ~20-30 files per subagent — launch multiple parallel subagents if needed

Each history-mining subagent:

• Reads JSONL files line by line and extracts:
  • Skill invocations: type: "user" messages where content contains <command-name>/skill-name</command-name>. Extract skill name and args.
  • Tool call sequences: type: "assistant" messages -> message.content[] items with type: "tool_use". Extract name and input. Build ordered tool-call sequences per session.
  • Repeated multi-step patterns: Same tool sequence appearing across multiple sessions (e.g., always Bash(git checkout) -> Edit -> Edit -> Bash(pytest) -> Bash(git commit)).
  • Common skill chains: Skill invocations that follow a consistent order (e.g., /autoskillit:investigate -> /autoskillit:rectify -> /autoskillit:implement-worktree).
  • Repeated run_cmd commands: Exact shell commands run frequently via Bash tool.
• Returns structured findings: frequency-ranked tool sequences (min 3 occurrences), skill chains, and notable single-tool patterns

Step 2: Synthesize Project Profile

Consolidate subagent findings into a structured profile:

• Language + package manager
• Test command (exact list form, e.g. ["pytest", "-v"])
• Build/lint tools
• Critical paths (for classify_fix)
• Whether a reset mechanism exists (Taskfile clean target, npm script, etc.)
• Worktree setup command (command to run after git worktree add)
• Existing config state (none / partial / complete)
• Current git branch (for base_branch default)
• Discovered workflow patterns from conversation history (if opted in) — recurring tool sequences and skill chains, ranked by frequency, with candidate recipe drafts

Step 3: Write Analysis to temp/ (relative to the current working directory)

Before presenting anything interactively, write the full analysis (project profile, workflow patterns, candidate workflows, shell command patterns) to:

temp/setup-project/analysis_{project_name}_{YYYY-MM-DD_HHMMSS}.md

Tell the user: "Full analysis saved to {path} for your review."

Step 4: Present Candidate Workflows

Interactive flow. For each candidate workflow discovered:

CRITICAL: Do NOT output any prose status text between workflow iterations. After completing one workflow's presentation and user response, immediately begin presenting the next workflow.

1. Always offer the standard implementation pipeline first (plan → dry-walkthrough → implement → test → merge), even if not discovered in history. This is the core AutoSkillit workflow.

2. For each candidate workflow (including the standard one): Do NOT output any prose status text between workflows — immediately begin the next workflow's presentation after the user responds.

   • Present the workflow chain and explain what it automates
   • Ask the user: "Would you like me to generate a recipe for this workflow?"
   • Before generating, resolve skill references in the workflow:
     • For each skill in the detected chain (no prose between skills), check if it exists both locally (.claude/skills/<name>/SKILL.md) and as a bundled autoskillit skill
     • If any skill exists in both, present the conflicts to the user as a batch:

       "These skills exist in both your project and AutoSkillit's bundled set:

       • <name> → local (bare /<name>) or bundled (/autoskillit:<name>)? Local versions are recommended. Should I use local for all, or do you want to pick individually?" List each conflicting skill name on its own line in the prompt.

     • Record the user's preferences and pass them as context to write-recipe
   • If yes: LOAD /autoskillit:write-recipe using the Skill tool to generate the script. The agent already has full context from the exploration phases (workflow name, detected variables like project_dir/work_dir/base_branch, tool call sequence, routing logic) — no explicit parameter passing is needed. write-recipe uses that context directly to produce a clean script.
   • Explain what a recipe is (discovered via list_recipes MCP tool, loaded via load_recipe, the agent interprets the YAML and executes the steps), show the generated script content
   • Track the user's approval — do NOT write to disk yet
   • Move to the next candidate workflow

Fill in detected values: test command, base branch, project-specific notes, any detected quirks. Use the two-directory model (project_dir + work_dir) in generated scripts. If work_dir equals project_dir, note that add_dir is not needed.

Step 5: Config Updates

Interactive config suggestion flow:

1. Show the current config vs. suggested config diff
2. For each suggested change, ask the user if they want to apply it
3. Track approvals — do NOT write to disk yet
4. Do NOT suggest reset_guard_marker — that's a workspace concern, not project setup
5. Ask the user for their preferred default base branch:

   "What is your default base branch? (e.g., 'integration' for the 3-tier model, 'main' for the classic model)" Default: integration If the user selects a value different from the package default (integration), add it to the config diff as:

   branching:
     default_base_branch: {user_choice}
   

If no config exists, present the suggested config in full. If config exists, only highlight missing or suboptimal settings.

Suggested config template:

test_check:
  command: {detected test command as list}
  # timeout: 600

# classify_fix:
#   path_prefixes:
#     - {detected critical paths}

# reset_workspace:
#   command: {detected reset command}
#   preserve_dirs: []

# worktree_setup:
#   command: {detected worktree setup command}

Step 6: Summary Confirmation Gate

Following the Terraform plan→apply pattern, show a summary of everything approved before touching disk:

1. For each approved recipe, save to .autoskillit/recipes/{name}.yaml
2. List all approved recipes with their save paths
3. List all approved config changes
4. Ask one final question: "Write all of the above?"
5. If confirmed:
   • Create target directories as needed
   • Write all approved recipes to their chosen paths
   • Apply all approved config changes
6. If declined: abort without writing anything

This prevents incremental approval fatigue and gives the user a single clear decision point.

Step 7: Output Summary

Write a concise summary to terminal:

• Which scripts were saved and where
• Which config changes were applied
• Any notes or warnings (e.g., test timeout may need adjustment, critical paths are inferred)

Do NOT include:

• Install instructions (user is already running the skill)
• "Getting Started" sections
• Repeated content from earlier steps

Output

Artifacts created:

• temp/setup-project/analysis_{project_name}_{YYYY-MM-DD_HHMMSS}.md — full analysis (always)
• .autoskillit/recipes/{name}.yaml — approved recipes
• .autoskillit/config.yaml — updated config (if changes approved)

After the summary confirmation gate completes (Step 7), emit the following structured output tokens as the very last lines of your text output:

analysis_path = {absolute_path_to_analysis_file}
config_path = {absolute_path_to_config_file}

Emit config_path only if .autoskillit/config.yaml was written in this session. If no config changes were applied, omit the config_path= line.