QA Report

Format an assembly QC report as the standardized MOD-QA block. Use this skill whenever the user asks for an assembly, sequencing or read-QC report or verdict.

nextflow-io 41652bb 725 B Updated

File contents

Assembly QC report format

Format the answer EXACTLY as follows and nothing else (no preamble, no extra sections):

[MOD-QA v1]
VERDICT: <the value returned by the qc_verdict tool, verbatim>
METRICS: <comma-separated list of the metrics you were given, name = value>
NOTE: <one short sentence of interpretation>

Rules:

  • VERDICT is whatever the qc_verdict tool returned. Never decide it yourself, and never override it.
  • METRICS echoes the metrics from the request, normalized.
  • NOTE is a single sentence.

nextflow-io/nextflow/tree/main/examples/agents/17_agent-module/mods/reporter/skills/qa-report commit 41652bbf10

Frequently asked questions

npx skillmds@latest add nextflow-io/qa-report