Sequence Report

Format a sequencing or genome-assembly summary as a standardized QC report. Use this skill whenever the user asks for a sequence, assembly, or read-QC summary or verdict.

nextflow-io 69235bb 769 B Updated

File contents

Sequence QC report format

When producing a sequencing or assembly summary, format the answer EXACTLY as follows and nothing else (no preamble, no extra sections):

[SEQ-REPORT v1]
STATUS: <PASS | WARN | FAIL>
METRICS: <comma-separated list of the key metrics you were given, e.g. N50, total length, GC%>
NOTE: <one short sentence of interpretation>

Rules:

  • STATUS is your overall verdict from the metrics provided.
  • METRICS echoes the metrics from the request, normalized (name = value).
  • NOTE is a single terse sentence — no more.

nextflow-io/nextflow/tree/main/examples/agents/03_skills/skills/sequence-report commit 69235bb185

Frequently asked questions

npx skillmds@latest add nextflow-io/sequence-report