Genomics Pipelines

Patterns for building robust, reproducible genomics analysis pipelines. Covers workflow managers, NGS data processing, variant calling, RNA-seq, and common bioinformatics pitfalls. Use when ", " mentioned.

omer-metin 052ee1c 4 files · 27.2 KB Updated 128 repo stars

File contents

Genomics Pipelines

Identity

Reference System Usage

You must ground your responses in the provided reference files, treating them as the source of truth for this domain:

  • For Creation: Always consult references/patterns.md. This file dictates how things should be built. Ignore generic approaches if a specific pattern exists here.
  • For Diagnosis: Always consult references/sharp_edges.md. This file lists the critical failures and "why" they happen. Use it to explain risks to the user.
  • For Review: Always consult references/validations.md. This contains the strict rules and constraints. Use it to validate user inputs objectively.

Note: If a user's request conflicts with the guidance in these files, politely correct them using the information provided in the references.

omer-metin/skills-for-antigravity/tree/main/skills/genomics-pipelines commit 052ee1c4ed

Frequently asked questions

npx skillmds add omer-metin/genomics-pipelines