Enrich

Enrich an ontology node (DOC-164 slice 5+)

Drive the agentic-code-ontology pipeline for one or more substrate nodes. Each invocation produces (or refreshes) Markdown sidecars at lineage/{repo}/understanding/{slug}.md, written by the file-analyser subagent with the live-URL-only doc rule and Gate 9 code-anchor mandate.

This skill is the maintainer-facing entry point for the per-node enrichment layer per adrs/drafts/agentic-code-ontology.md revision 2.

Prerequisite

The substrate scaffold (DOC-164 slices 1-4) must have run against the target repo. lineage/{repo}/nodes.jsonl must exist. If it doesn't, run /scan scanners/code-lineage/{axis}.md first or invoke the substrate's lineage-extractor scan {repo} --full.

Argument forms

Protocol

1. Orient

Read these (skip if already loaded this session):

• CLAUDE.md — the workspace's quality bar
• adrs/drafts/agentic-code-ontology.md — the layered ADR + the per-node sidecar schema
• .claude/agents/file-analyser.md — the subagent system prompt you'll invoke (so you know what input shape it expects)

2. Resolve the worklist

Build a list of (node_id, path, kind, axis) tuples for this invocation:

• For <path> form: jq -c 'select(.path == "<path>" or (.path | startswith("<path>:")))' lineage/{repo}/nodes.jsonl. Pick the file-level match first; if multiple symbol-level nodes also match, list them but don't enrich them this invocation (one node at a time).
• For --node <id>: jq -c 'select(.id == "<id>")' lineage/{repo}/nodes.jsonl. Exactly one match expected; error if 0 or >1.
• For --touched: read lineage/{repo}/manifest.yaml's enrichment.last_enriched_commit (or last_scan_commit if no enrichment block yet). git -C ../{repo} diff --name-only <commit>..HEAD → list of touched files. For each touched file, jq for nodes whose path starts with that file. Cap at --max-nodes.
• For --batch <axis>: jq -c 'select(.axis == "<axis>")' lineage/{repo}/nodes.jsonl → all nodes; filter out those with an existing lineage/{repo}/understanding/{slug}.md whose enriched_at_commit matches current HEAD; pick the first --max-nodes.

If the worklist is empty, report "Nothing to enrich (all nodes current)" and exit.

3. Resolve the sidecar slug for each node

Slug rule (matches the ADR): node_id.replace(' ', '__').replace('/', '_').replace(':', '__').replace('.', '_'). Filesystem-safe, reversible, greppable.

Sidecar path: lineage/{repo}/understanding/{slug}.md.

4. Resolve scaffold edges per node (1-hop)

For each node in the worklist, read lineage/{repo}/edges.jsonl and collect:

• imports: edges where this node is src and type=imports
• imported-by: edges where this node is dst and type=imports
• exposes: src→dst with type=exposes
• configures: src→dst with type=configures
• mounts: src→dst with type=mounts

This goes into the file-analyser's prompt as SCAFFOLD_EDGES.

4.5. Cache check (slice 6+)

Before spawning file-analyser for a node, check whether the sidecar is already current:

• If lineage/{repo}/understanding/{slug}.md does NOT exist → CACHE MISS, proceed to spawn.
• If the sidecar exists, parse its frontmatter:
  • enriched_at_commit — substrate commit at which the sidecar was authored
  • prompt_version — the file-analyser prompt version that authored it
  • (planned: extracted_at_commit, model, scaffold_hash for finer cache keys)
• Compare to the current substrate state (manifest's last_scan_commit) AND the current file-analyser prompt version (read the frontmatter of .claude/agents/file-analyser.md — typically file-analyser/0.1.0 for slice 5/6).
• Skip the spawn IF:
  • enriched_at_commit == last_scan_commit (substrate hasn't moved)
  • prompt_version == current file-analyser version (prompt unchanged)
  • The node's source file hasn't changed since enriched_at_commit (use git -C ../{repo} log --oneline <enriched_at_commit>..HEAD -- <source_path> — empty output = unchanged)
• Force re-enrichment when the maintainer passes --no-cache or --force. Default is cache-on; this is the cheap/fast path.

Cache hits are reported as <node-id>: cached (no change since <commit>). Cache misses fall through to the spawn step.

The cache invariant per the ADR: an enrichment is reused iff (node_id, scaffold_hash_of_file, prompt_version, model) matches. MVP slice-6 collapses this to (node_id, source_unchanged_since_enriched_at_commit, prompt_version) — the source-unchanged check is a proxy for scaffold_hash. Future slices may add explicit content-hash keys if false-cache-misses surface.

5. Spawn the file-analyser per cache-missed node

Invoke the file-analyser subagent via the Agent tool, one node at a time (parallel-spawn is fine for independent nodes — they don't share state). Construct the prompt as:

NODE_ID: <id>
NODE_KIND: <kind>
AXIS: <axis>
PATH: <path>
REPO: <repo>
REPO_ROOT_ABS: <absolute, e.g. /home/.../work/odd/{repo}>
SCAFFOLD_EDGES:
  imports: [...]
  imported-by: [...]
  exposes: [...]
  configures: [...]
  mounts: [...]
NODE_METADATA: <verbatim from nodes.jsonl's metadata block>
SIDECAR_TARGET: <absolute path>
WORKSPACE_ROOT_ABS: <absolute, e.g. /home/.../work/odd/odd-team>
EXISTING_SIDECAR: <if a sidecar exists, the verbatim content; else "(none)">

The subagent's tool surface is fixed by the .claude/agents/file-analyser.md frontmatter (Read, Grep, Glob, WebFetch, Write). It writes the sidecar via Write to SIDECAR_TARGET and replies with Wrote: <path> + Confidence: ....

6. Validate the resulting sidecar

For each sidecar produced:

• Run the validator: python -m lineage_extractor.cli validate-sidecar <sidecar-path> (Bash). The validator parses YAML frontmatter + named Markdown sections and verifies required fields are present.
• If validation fails, log the failure to lineage/{repo}/enrichment.log and surface to the maintainer. Do NOT auto-retry in slice 5 — single-shot per invocation; the maintainer iterates the prompt if quality is wrong.

7. Update the manifest

After all nodes in the worklist complete (success or failure):

• Read lineage/{repo}/manifest.yaml.
• Add or update the enrichment block:
  • schema_version: 0.1.0
  • subagent_versions.file-analyser: file-analyser/0.1.0
  • last_enriched_commit: <repo's HEAD commit> (only advance if every node in the worklist succeeded)
  • enriched_node_count: <count of unique sidecars under understanding/>
  • total_node_count: <count of unique node IDs in nodes.jsonl>
  • enrichment_coverage: <pct>
  • last_session_id: <Claude Code session id, if available; else timestamp>
• Append to lineage/{repo}/enrichment.log: one line per node — <timestamp>\t<session_id>\t<node_id>\t<sidecar_path>\t<confidence>\t<doc_urls_fetched>.

8. Report

Concise output:

• Worklist size: N
• Successful enrichments: M
• Failed enrichments: K (list them with the validator's reason)
• Coverage now: X% (Y/Z nodes)
• Suggested next: /enrich --batch <axis> for the next N unenriched nodes, or /enrich <specific-path> for ad-hoc work.

Rules

• Live-URL-only doc rule is non-negotiable. If a sidecar has a documents.declared_docs entry without last_verified_status, validation fails. The file-analyser prompt enforces this; the validator double-checks.
• One sidecar per node. Don't enrich neighbour nodes in the same invocation — they get their own /enrich call when the maintainer chooses.
• Don't auto-fix the source code. The file-analyser's tool surface excludes Edit. If enrichment surfaces a bug, log it as a backlog item via playbooks/follow-up-on-disk.md; don't patch the code.
• Preserve ## Maintainer notes. If a sidecar already exists, pass its content as EXISTING_SIDECAR so the file-analyser preserves the maintainer notes block.
• Skip auto-advance if any node failed. last_enriched_commit only advances when every node in the worklist passed validation. Partial success leaves the mark where it was.
• Cap at --max-nodes. Token budget per session is the constraint. Default 5; the maintainer can raise if files are small.

Failure modes to surface (not auto-fix)

• Validator rejects sidecar (missing required field, fabricated file:line, banned phrase) → log + report; maintainer iterates the prompt.
• WebFetch fails (404 doc URL) → the sidecar records last_verified_status: 404; the doc-gap-finder reducer (slice 7) will surface these as DOC-NNN candidates.
• Source file hash differs from substrate's nodes.jsonl (substrate is stale relative to current HEAD) → report; recommend lineage-extractor scan {repo} --full first.

Cross-references

• Subagent: .claude/agents/file-analyser.md
• Validator: lineage/_extractor/src/lineage_extractor/validators.py
• ADR: adrs/drafts/agentic-code-ontology.md revision 2
• Substrate ADR: adrs/drafts/code-lineage-substrate.md revision 2
• Probe set: lineage/PROBES.md (extended for semantic claims per adrs/drafts/research/agentic-code-ontology/PROBES.md)