Gitnexus Guide

GitNexus Guide — what it is and when to use it

GitNexus indexes a repository into a knowledge graph (symbols, call edges, execution flows, Leiden clusters) and surfaces it through a web UI, a wiki generator, and architecture maps. In this environment it is a manual human tool: there is no MCP server, no autonomous agent use, and no "must run before editing" mandates. To run it, see the gitnexus-cli skill (the gnx commands).

When to use GitNexus vs sem

Rule of thumb: sem for per-change impact (agentic, fast), GitNexus for whole-system exploration (manual, visual).

What the web UI gives you (gnx serve → http://127.0.0.1:4747)

• Semantic + keyword search across the graph — find execution flows by concept.
• Symbol 360° view — callers, callees, types, and which flows a symbol participates in.
• Execution flows ("processes") — step-by-step multi-file traces.
• Clusters — functional areas (Leiden community detection) with cohesion scores.
• Architecture maps — Mermaid diagrams of the structure.

Advanced: terminal exploration (alternative to the UI)

The underlying gitnexus binary still exposes graph queries directly, if you prefer the terminal over the web UI:

gitnexus query "auth flow"          # execution flows related to a concept
gitnexus context <symbolName>       # 360° view of a symbol
gitnexus impact <symbolName>        # blast radius of a symbol
gitnexus cypher '<query>'           # raw graph query (see graph schema below)

How the index works

• Storage: one file per repo — <repo>/.gitnexus/lbug (LadybugDB: graph + full-text search + vector embeddings), gitignored. Plus parse caches for fast re-index.
• Global state: ~/.gitnexus/registry.json (which repos are indexed) and ~/.config/gitnexus/config.json (settings). No global embedding store.
• Freshness: indexes go stale as the repo changes — re-run gnx index <path> before browsing (idempotent; skips repos already current with git HEAD).
• Embeddings: local ONNX backend (384-dim), free, no API key. Pure shell/Terraform repos build structure-only (no embeddable content); gnx index handles that automatically.
• Semantic search mode — exact-scan, not HNSW (known limitation): GitNexus 1.6.7 cannot build the HNSW vector index — the VECTOR extension installs and loads fine, but CREATE_VECTOR_INDEX(... metric := 'cosine') throws an opaque native error, so semantic search always falls back to exact-scan (brute-force cosine, full accuracy). Exact-scan is capped at 10k chunks by default; gnx raises it to 50k via GITNEXUS_SEMANTIC_EXACT_SCAN_LIMIT so even the largest repos (~20-30k symbols) get complete coverage. doctor shows VECTOR index: available / Semantic mode: vector-index, but that only means the platform is supported — not that HNSW actually builds. Revisit HNSW on a future GitNexus release; until then exact-scan is the working path.

Graph schema (for gitnexus cypher)

Nodes: File, Function, Class, Interface, Method, Community, Process Edges (via CodeRelation.type): CALLS, IMPORTS, EXTENDS, IMPLEMENTS, DEFINES, MEMBER_OF, STEP_IN_PROCESS

MATCH (caller)-[:CodeRelation {type: 'CALLS'}]->(f:Function {name: "myFunc"})
RETURN caller.name, caller.filePath