Research Methodology
Overview
The research workspace operates on the Two-Zone Model — a deliberate two-layer architecture that separates automated ingestion from curated structured knowledge. Layer 1 (ingestion) captures content automatically at high volume. Layer 2 (structured workspace) holds only deliberate, human-curated entries. The gap between them is intentional by design, not a missing feature.
See references/two-zone-model.md for the full diagram, promotion checklist, and database quick reference.
Core Rules
Never automate the Layer 1 → Layer 2 promotion step
Promotion is always manual and deliberate. Do not write scripts to bulk-promote Layer 1 entries into Layer 2 databases. When you find yourself automating this step, you are working against the architecture.
The Layer 1 databases (ingestion databases) are write-once, high-volume, minimal-schema targets. The Layer 2 databases (your structured workspace databases) are the curated knowledge graph — relational, annotated, and high-quality.
Citation integrity is non-negotiable
Every reference you include in research output must be traceable to a real source. Follow these rules at all times:
- Never hallucinate citations. Do not invent author names, years, titles, or DOIs.
- Never use
Author et al. (YYYY) without a verifiable, linked source.
- If a reference cannot be confirmed, use the marker
[CITATION NEEDED: description of what is needed] instead of inventing a reference.
- Use calibrated uncertainty language. Distinguish between established findings, likely interpretations, and speculation. Use "evidence suggests", "it is likely", "it is unclear whether" as appropriate.
- Specify data sources, versions, and access dates when citing datasets or tools.
- Declare limitations explicitly. Do not present results beyond what the evidence supports.
When uncertain, flag — never fill the gap with invention
When you lack a citation or cannot confirm a claim:
- Insert
[CITATION NEEDED: <description>] at the exact location
- Flag the unsupported claim explicitly in any output or summary
- Suggest a concrete evidence-capture step (e.g., "this should be confirmed by reviewing [source type]")
- Do NOT resume as though the gap were closed until it is actually resolved
Speculative drafts may retain [CITATION NEEDED] markers. Final drafts must resolve all markers before delivery.
Research Integrity Principles
- Reproducibility: Provide methods, parameters, and tool versions sufficient for another researcher to reproduce your process.
- Honesty about scope: If a claim goes beyond the available evidence, say so.
- Source attribution: Every artifact that enters Layer 2 must carry its origin (DOI, URL, Zotero key, or equivalent).
- No silent omissions: If you drop a
[CITATION NEEDED] marker without resolving it, you are misrepresenting the quality of the output.
References
references/two-zone-model.md — Full Two-Zone Model: architecture diagram, promotion checklist, DB quick reference, rationale
references/citation-protocol.md — Citation fidelity rules, calibrated uncertainty language, integrity response protocol
1---2name: notion-ao-research-methodology3description: This skill should be used when working on any research task, when the user asks about "research methodology", "citation standards", "Two-Zone Model", "research integrity", "citation needed markers", or "calibrated uncertainty". Provides foundational principles for conducting rigorous research with non-negotiable citation fidelity rules.4license: CC-BY-NC-SA-4.05---67# Research Methodology89## Overview1011The research workspace operates on the **Two-Zone Model** — a deliberate two-layer architecture that separates automated ingestion from curated structured knowledge. Layer 1 (ingestion) captures content automatically at high volume. Layer 2 (structured workspace) holds only deliberate, human-curated entries. The gap between them is **intentional by design**, not a missing feature.1213See `references/two-zone-model.md` for the full diagram, promotion checklist, and database quick reference.1415## Core Rules1617### Never automate the Layer 1 → Layer 2 promotion step1819Promotion is **always manual and deliberate**. Do not write scripts to bulk-promote Layer 1 entries into Layer 2 databases. When you find yourself automating this step, you are working against the architecture.2021The Layer 1 databases (ingestion databases) are write-once, high-volume, minimal-schema targets. The Layer 2 databases (your structured workspace databases) are the curated knowledge graph — relational, annotated, and high-quality.2223### Citation integrity is non-negotiable2425Every reference you include in research output must be traceable to a real source. Follow these rules at all times:2627- **Never hallucinate citations.** Do not invent author names, years, titles, or DOIs.28- **Never use `Author et al. (YYYY)` without a verifiable, linked source.**29- **If a reference cannot be confirmed**, use the marker `[CITATION NEEDED: description of what is needed]` instead of inventing a reference.30- **Use calibrated uncertainty language.** Distinguish between established findings, likely interpretations, and speculation. Use "evidence suggests", "it is likely", "it is unclear whether" as appropriate.31- **Specify data sources, versions, and access dates** when citing datasets or tools.32- **Declare limitations explicitly.** Do not present results beyond what the evidence supports.3334### When uncertain, flag — never fill the gap with invention3536When you lack a citation or cannot confirm a claim:37381. Insert `[CITATION NEEDED: <description>]` at the exact location392. Flag the unsupported claim explicitly in any output or summary403. Suggest a concrete evidence-capture step (e.g., "this should be confirmed by reviewing [source type]")414. Do NOT resume as though the gap were closed until it is actually resolved4243Speculative drafts may retain `[CITATION NEEDED]` markers. Final drafts must resolve all markers before delivery.4445## Research Integrity Principles4647- **Reproducibility**: Provide methods, parameters, and tool versions sufficient for another researcher to reproduce your process.48- **Honesty about scope**: If a claim goes beyond the available evidence, say so.49- **Source attribution**: Every artifact that enters Layer 2 must carry its origin (DOI, URL, Zotero key, or equivalent).50- **No silent omissions**: If you drop a `[CITATION NEEDED]` marker without resolving it, you are misrepresenting the quality of the output.5152## References5354- `references/two-zone-model.md` — Full Two-Zone Model: architecture diagram, promotion checklist, DB quick reference, rationale55- `references/citation-protocol.md` — Citation fidelity rules, calibrated uncertainty language, integrity response protocol