Evolve

Instructions

You are clustering existing instincts — not extracting new ones and not promoting anything automatically. This is the structural pass that groups related behavioral rules so future skills can act on them.

Step 1: Load Instincts

Determine scope from the invocation arguments:

• --global → only load from ~/.claude/instincts/global/
• --project <slug> → load from global AND ~/.claude/instincts/projects/<slug>/
• No flags → load global only (default to --global behavior)

GLOBAL_DIR="$HOME/.claude/instincts/global"
ls "$GLOBAL_DIR"/INS-*.md 2>/dev/null

If --project <slug> was passed, also load:

PROJECT_DIR="$HOME/.claude/instincts/projects/<slug>"
ls "$PROJECT_DIR"/INS-*.md 2>/dev/null

For each instinct file found, read the full content and parse the YAML frontmatter. Extract:

• id, name, status, confidence
• signals.trigger_patterns (list of strings)
• lineage.cluster_id (current cluster assignment if any)
• score.successes, score.confirmations, score.opportunities (or len of evidence array as opportunity proxy)
• evidence (array length = opportunity count)
• created_at
• The ## Operational Rule body text (the rule text used for similarity)

Filter: Only keep instincts where status is active or proven. Candidates are too immature to cluster.

If fewer than 2 active/proven instincts remain after filtering, output:

Not enough instincts to cluster.

Found N total instinct(s) but only M with status=active or status=proven.
Clustering requires at least 2 active/proven instincts.

Then stop.

Step 2: Cluster by Similarity

First, try the cluster library:

python3 -c "
import sys, json; sys.path.insert(0, '$HOME/.claude/instincts/lib')
from cluster import cluster_instincts
clusters = cluster_instincts('$HOME/.claude/instincts/global/', min_similarity=0.55)
print(json.dumps(clusters, default=str))
" 2>/dev/null

If the cluster library is unavailable (ImportError or non-zero exit), fall back to manual pairwise comparison using trigram_jaccard. Run the comparison across ALL loaded instincts (global + project if applicable):

python3 - <<'PYEOF'
import sys, json, os
sys.path.insert(0, os.path.expanduser('~/.claude/instincts/lib'))
from similarity import trigram_jaccard, parse_instinct_file

# Build instinct list from all loaded files
files = <LIST_OF_INSTINCT_FILE_PATHS>
instincts = [parse_instinct_file(f) for f in files]
instincts = [i for i in instincts if i and i.get('rule_text')]

# Pairwise similarity
pairs = []
for i in range(len(instincts)):
    for j in range(i + 1, len(instincts)):
        a, b = instincts[i], instincts[j]
        sim = trigram_jaccard(a['rule_text'], b['rule_text'])
        if sim >= 0.55:
            pairs.append({'a': a['id'], 'b': b['id'], 'sim': round(sim, 4),
                          'a_name': a['name'], 'b_name': b['name']})

pairs.sort(key=lambda x: x['sim'], reverse=True)
print(json.dumps(pairs))
PYEOF

Clustering logic (union-find approach): Start with each instinct in its own singleton group. For each similar pair (similarity >= 0.55), merge their groups. After processing all pairs, groups with 2+ members become clusters. Singletons are listed in the "No Clusters" section of the report.

When assigning cluster names and trigger families:

• Look at the union of all trigger_patterns from member instincts
• Find the common theme (e.g., "slack-api", "digest-format", "git-workflow")
• Name the cluster after that theme in kebab-case
• trigger_family = the shortest common prefix/theme across all trigger patterns

For each cluster, compute:

• avg_confidence = mean of all member instincts' confidence values
• skill_hypothesis = one-line description of what skill this cluster could become (e.g., "A skill that enforces correct Slack unread detection and triage patterns")

Step 3: Write Cluster Files

Ensure the clusters directory exists:

mkdir -p "$HOME/.claude/instincts/global/clusters"

For each cluster with 2+ members, generate a unique ID:

SUFFIX=$(python3 -c "import secrets; print(secrets.token_hex(2))")
CLU_ID="CLU-$(date +%Y%m%d)-${SUFFIX}"

Check if a cluster file for this group already exists by reading existing CLU-*.md files in ~/.claude/instincts/global/clusters/ and comparing their member_ids sets. If an existing cluster contains a subset or superset of the current member set (overlap >= 50%), treat it as the same cluster and update rather than create.

For a NEW cluster, write ~/.claude/instincts/global/clusters/CLU-YYYYMMDD-XXXX.md:

---
id: CLU-YYYYMMDD-XXXX
name: "<generalized cluster name in kebab-case>"
member_ids: [INS-..., INS-...]
avg_confidence: 0.XX
trigger_family: "<common pattern>"
skill_hypothesis: "<one-line: what skill would this cluster become?>"
status: candidate
created_at: "<ISO-8601>"
updated_at: "<ISO-8601>"
---
## Members
- INS-... | "<name>" | confidence: 0.XX | scope: global|project
- INS-... | "<name>" | confidence: 0.XX | scope: global|project

## Trigger Family
Shared patterns: <comma-separated list>

## Skill Hypothesis
<2-4 sentences describing the generalized behavioral rule this cluster represents and what a synthesized skill would enforce.>

For an UPDATED cluster (existing CLU file gains a new member), update member_ids, avg_confidence, updated_at, and the ## Members section. Append the new member line.

After writing each cluster file, update each member instinct's lineage.cluster_id using the confidence library helper:

python3 -c "
import sys
sys.path.insert(0, '$HOME/.claude/instincts/lib')
from confidence import update_instinct_file
update_instinct_file('<INSTINCT_PATH>', {
    'lineage.cluster_id': '<CLU_ID>',
    'updated_at': '<ISO_TIMESTAMP>',
})
"

If the helper fails, use the Edit tool to do a targeted replacement of cluster_id: null with cluster_id: <CLU_ID> in the instinct's frontmatter.

Step 4: Identify Promotion Candidates

This step only runs if project instincts were loaded (i.e., --project <slug> was passed).

Scan all proven project instincts (those with scope: project and status: proven). For each, check all three promotion eligibility criteria:

1. Confidence threshold: confidence >= 0.85
2. Opportunity threshold: opportunities >= 15 (use len(evidence) as opportunity count proxy if no explicit field)
3. Generality check: Count tokens in the ## Operational Rule text that are project-specific (project names, file paths, tool names unique to the project, API endpoints, etc.). The ratio of project-specific tokens to total tokens must be < 30%.

For the generality check, use this heuristic:

• Project-specific tokens include: the project slug name, filenames like *.py/*.js that appear to be project-specific, API URLs with project-specific domains, team names, ClickUp/Linear IDs.
• Universal tokens include: generic tool names (git, python, bash), general patterns (always, never, when, if), verbs (run, check, validate, use).

Report each eligible instinct but do NOT modify it. Only /promote moves instincts.

Step 5: Update INSTINCTS.md

Read ~/.claude/instincts/global/INSTINCTS.md. Find the ## Clusters section. If it does not exist, append it at the end of the file.

Rebuild the ## Clusters section from scratch by reading ALL CLU-*.md files currently in ~/.claude/instincts/global/clusters/:

## Clusters
- CLU-XXXXXXXX-XXXX | N members | avg_conf: 0.XX | "<trigger family>"
- CLU-XXXXXXXX-XXXX | N members | avg_conf: 0.XX | "<trigger family>"

Sort entries by avg_confidence descending. If there are no clusters at all, keep the section as:

## Clusters
(none yet)

Use the Edit tool to replace the existing ## Clusters section content with the rebuilt version. Do not touch any other section.

Step 6: Report

Output a summary to the user:

## Instinct Evolution Report

**Analyzed**: N instincts (N active, N proven) across N scope(s)
**Clusters formed**: N new, N updated

### New Clusters (N)
- CLU-XXXXXXXX-XXXX | N members | "<trigger family>" | skill hypothesis: "<one-line>"
  Members: INS-XXX ("name"), INS-XXX ("name")
  Avg confidence: 0.XX | Min similarity: 0.XX

### Updated Clusters (N)
- CLU-XXXXXXXX-XXXX | added INS-XXX | N→N+1 members | "<trigger family>"

### Promotion Candidates (N)
- INS-XXX | "<name>" | confidence: 0.XX | opportunities: N | scope: project/<slug>
  → Eligible for /promote — run /promote <id> to move to global scope

### No Clusters (N singletons)
- INS-XXX | "<name>" — no similar instincts found (best pair similarity: 0.XX)
- INS-XXX | "<name>" — no similar instincts found (no pairs above 0.55 threshold)

If there are 0 promotion candidates, omit that section entirely. If there are 0 singletons (all instincts clustered), omit the singletons section. If there are 0 updated clusters, omit that section.

Important Constraints

• Never auto-promote. This skill only identifies promotion candidates. Moving an instinct to global scope is a user action via /promote.
• Only cluster active/proven instincts. Candidates are too immature — clustering them would embed low-quality signals into the structural layer.
• mkdir -p before writing any files. Always ensure ~/.claude/instincts/global/clusters/ exists before attempting to write CLU-*.md files.
• Prefer updates over creates. If a matching CLU file already exists, update it rather than creating a duplicate cluster.
• Preserve instinct file integrity. When updating lineage.cluster_id, only change that one field. Never rewrite the whole instinct file.
• Graceful fallback. If the cluster library is unavailable, fall back to manual trigram_jaccard comparison. If similarity.py is also unavailable, report "Similarity library unavailable — cannot cluster" and exit cleanly without writing any files.
• Batch Python calls. Run pairwise comparisons in a single Python invocation, not one per pair.
• Be conservative with skill hypotheses. Only propose a skill if the cluster represents a clearly generalizable behavioral pattern. "Two instincts about Slack" is not enough for a skill hypothesis if they are about unrelated Slack behaviors.