Git Cleanup

Git Cleanup

Safely clean up accumulated git worktrees and local branches by categorizing them into: safely deletable (merged), potentially related (similar themes), and active work (keep).

When to Use

• When the user has accumulated many local branches and worktrees
• When branches have been merged but not cleaned up locally
• When remote branches have been deleted but local tracking branches remain

When NOT to Use

• Do not use for remote branch management (this is local cleanup only)
• Do not use for repository maintenance tasks like gc or prune
• Not designed for headless or non-interactive automation (requires user confirmations at two gates)

Core Principle: SAFETY FIRST

Never delete anything without explicit user confirmation. This skill uses a gated workflow where users must approve each step before any destructive action.

Critical Implementation Notes

Squash-Merged Branches Require Force Delete

IMPORTANT: git branch -d will ALWAYS fail for squash-merged branches because git cannot detect that the work was incorporated. This is expected behavior, not an error.

When you identify a branch as squash-merged:

• Plan to use git branch -D (force delete) from the start
• Do NOT try git branch -d first and then ask again for -D - this wastes user confirmations
• In the confirmation step, show git branch -D for squash-merged branches

Group Related Branches BEFORE Categorization

MANDATORY: Before categorizing individual branches, group them by name prefix:

# Extract common prefixes from branch names
# e.g., feature/auth-*, feature/api-*, fix/login-*

Branches sharing a prefix (e.g., feature/api, feature/api-v2, feature/api-refactor) are almost certainly related iterations. Analyze them as a group:

1. Find the oldest and newest by commit date
2. Check if newer branches contain commits from older ones
3. Check which PRs merged work from each
4. Determine if older branches are superseded

Present related branches together with a clear recommendation, not scattered across categories.

Thorough PR History Investigation

Don't rely on simple keyword matching. For [gone] branches:

# 1. Get the branch's commits that aren't in default branch
git log --oneline "$default_branch".."$branch"

# 2. Search default branch for PRs that incorporated this work
# Search by: branch name, commit message keywords, PR numbers
git log --oneline "$default_branch" | grep -iE "(branch-name|keyword|#[0-9]+)"

# 3. For related branch groups, trace which PRs merged which work
git log --oneline "$default_branch" | grep -iE "(#[0-9]+)" | head -20

Workflow

Phase 1: Comprehensive Analysis

Gather ALL information upfront before any categorization:

# Get default branch name
default_branch=$(git symbolic-ref refs/remotes/origin/HEAD \
  2>/dev/null | sed 's@^refs/remotes/origin/@@' || echo "main")

# Protected branches - never analyze or delete
protected='^(main|master|develop|release/.*)$'

# List all local branches with tracking info
git branch -vv

# List all worktrees
git worktree list

# Fetch and prune to sync remote state
git fetch --prune

# Get merged branches (into default branch)
git branch --merged "$default_branch"

# Get recent PR merge history (squash-merge detection)
git log --oneline "$default_branch" | grep -iE "#[0-9]+" | head -30

# For EACH non-protected branch, get unique commits and sync status
for branch in $(git branch --format='%(refname:short)' \
  | grep -vE "$protected"); do
  echo "=== $branch ==="
  echo "Commits not in $default_branch:"
  git log --oneline "$default_branch".."$branch" 2>/dev/null \
    | head -5
  echo "Commits not pushed to remote:"
  git log --oneline "origin/$branch".."$branch" 2>/dev/null \
    | head -5 || echo "(no remote tracking)"
done

Note on branch names: Git branch names can contain characters that break shell expansion. Always quote "$branch" in commands.

Phase 2: Group Related Branches

Do this BEFORE individual categorization.

Identify branch groups by shared prefixes:

# List branches and extract prefixes
git branch --format='%(refname:short)' | sed 's/-[^-]*$//' | sort | uniq -c | sort -rn

For each group with 2+ branches:

1. Compare commit histories - Which branches contain commits from others?
2. Find merge evidence - Which PRs incorporated work from this group?
3. Identify the "final" branch - Usually the most recent or most complete
4. Mark superseded branches - Older iterations whose work is in main or in a newer branch

SUPERSEDED requires evidence, not just shared prefix:

• A PR merged the work into main, OR
• A newer branch contains all commits from the older branch
• Name prefix alone is NOT sufficient — similarly named branches may contain independent work

Example analysis for feature/api-* branches:

### Related Branch Group: feature/api-*

| Branch | Commits | PR Merged | Status |
|--------|---------|-----------|--------|
| feature/api | 12 | #29 (initial API) | Superseded - work in main |
| feature/api-v2 | 8 | #45 (API improvements) | Superseded - work in main |
| feature/api-refactor | 5 | #67 (refactor) | Superseded - work in main |
| feature/api-final | 4 | None found | Superseded by above PRs |

**Recommendation:** All 4 branches can be deleted - work incorporated via PRs #29, #45, #67

Phase 3: Categorize Remaining Branches

For branches NOT in a related group, categorize individually:

Is branch merged into default branch?
├─ YES → SAFE_TO_DELETE (use -d)
└─ NO → Is tracking a remote?
        ├─ YES → Remote deleted? ([gone])
        │        ├─ YES → Was work squash-merged? (check main for PR)
        │        │        ├─ YES → SQUASH_MERGED (use -D)
        │        │        └─ NO → REMOTE_GONE (needs review)
        │        └─ NO → Local ahead of remote? (check: git log origin/<branch>..<branch>)
        │                ├─ YES (has output) → UNPUSHED_WORK (keep)
        │                └─ NO (empty output) → SYNCED_WITH_REMOTE (keep)
        └─ NO → Has unique commits?
                ├─ YES → LOCAL_WORK (keep)
                └─ NO → SAFE_TO_DELETE (use -d)

Category definitions:

Phase 4: Dirty State Detection

Check ALL worktrees and current directory for uncommitted changes:

# For each worktree path
git -C <worktree-path> status --porcelain

# For current directory
git status --porcelain

Display warnings prominently:

WARNING: ../proj-auth has uncommitted changes:
  M  src/auth.js
  ?? new-file.txt

These changes will be LOST if you remove this worktree.

GATE 1: Present Complete Analysis

Present everything in ONE comprehensive view. Group related branches together:

## Git Cleanup Analysis

### Related Branch Groups

**Group: feature/api-* (4 branches)**
| Branch | Status | Evidence |
|--------|--------|----------|
| feature/api | Superseded | Work merged in PR #29 |
| feature/api-v2 | Superseded | Work merged in PR #45 |
| feature/api-refactor | Superseded | Work merged in PR #67 |
| feature/api-final | Superseded | Older iteration, diverged |

Recommendation: Delete all 4 (work is in main)

---

### Individual Branches

**Safe to Delete (merged with -d)**
| Branch | Merged Into |
|--------|-------------|
| fix/typo | main |

**Safe to Delete (squash-merged, requires -D)**
| Branch | Merged As |
|--------|-----------|
| feature/login | PR #42 |

**Needs Review ([gone] remotes, no PR found)**
| Branch | Last Commit |
|--------|-------------|
| experiment/old | abc1234 "WIP something" |

**Keep (active work)**
| Branch | Status |
|--------|--------|
| wip/new-feature | 5 unpushed commits |

### Worktrees
| Path | Branch | Status |
|------|--------|--------|
| ../proj-auth | feature/auth | STALE (merged) |

---

**Summary:**
- 4 related branches (feature/api-*) - recommend delete all
- 1 merged branch - safe to delete
- 1 squash-merged branch - safe to delete
- 1 needs review
- 1 to keep

Which would you like to clean up?

Use AskUserQuestion with clear options:

• Delete all recommended (groups + merged + squash-merged)
• Delete specific groups/categories
• Let me pick individual branches

Do not proceed until user responds.

GATE 2: Final Confirmation with Exact Commands

Show the EXACT commands that will run, with correct flags:

I will execute:

# Merged branches (safe delete)
git branch -d fix/typo

# Squash-merged branches (force delete - work is in main via PRs)
git branch -D feature/login
git branch -D feature/api
git branch -D feature/api-v2
git branch -D feature/api-refactor
git branch -D feature/api-final

# Worktrees
git worktree remove ../proj-auth

Confirm? (yes/no)

IMPORTANT: This is the ONLY confirmation needed for deletion. Do not add extra confirmations if -D is required.

Phase 5: Execute

Run each deletion as a separate command so partial failures don't block remaining deletions. Report the result of each:

git branch -d fix/typo
git branch -D feature/login
git branch -D feature/api
git branch -D feature/api-v2
git branch -D feature/api-refactor
git branch -D feature/api-final
git worktree remove ../proj-auth

If a deletion fails, report the error and continue with remaining deletions.

Phase 6: Report

## Cleanup Complete

### Deleted
- fix/typo
- feature/login
- feature/api
- feature/api-v2
- feature/api-refactor
- feature/api-final
- Worktree: ../proj-auth

### Remaining (4 branches)
| Branch | Status |
|--------|--------|
| main | current |
| wip/new-feature | active work |
| experiment/old | needs review |

Safety Rules

1. Never invoke automatically - Only run when user explicitly uses /git-cleanup
2. Two confirmation gates only - Analysis review, then deletion confirmation
3. Use correct delete command - -d for merged, -D for squash-merged/superseded
4. Never touch protected branches - main, master, develop, release/* (filtered programmatically)
5. Block dirty worktree removal - Refuse without explicit data loss acknowledgment
6. Group related branches - Don't scatter them across categories

Rationalizations to Reject

These are common shortcuts that lead to data loss. Reject them:

Source: trailofbits/skills → plugins/git-cleanup/skills/git-cleanup/SKILL.md