Write Validation Documentation

書驗文

立計算系之全 IQ/OQ/PQ 驗文。

用

• 為管用驗 R 或他軟→用
• 備管審→用
• 錄計境之資→用
• 新或重資系建更驗綱與報→用

入

• 必：欲驗系/軟（名、版、用）
• 必：定範與策之驗計
• 必：用要規
• 可：現 SOP 模
• 可：前驗文（重資）

行

一：書 IQ 綱

# Installation Qualification Protocol
**System**: R Statistical Computing Environment
**Version**: 4.5.0
**Document ID**: IQ-PROJ-001
**Prepared by**: [Name] | **Date**: [Date]
**Reviewed by**: [Name] | **Date**: [Date]
**Approved by**: [Name] | **Date**: [Date]

## 1. Objective
Verify that R and required packages are correctly installed per specifications.

## 2. Prerequisites
- [ ] Server/workstation meets hardware requirements
- [ ] Operating system qualified
- [ ] Network access available (for package downloads)

## 3. Test Cases

### IQ-001: R Installation
| Field | Value |
|-------|-------|
| Requirement | R version 4.5.0 correctly installed |
| Procedure | Open R console, execute `R.version.string` |
| Expected Result | "R version 4.5.0 (2025-04-11)" |
| Actual Result | ______________________ |
| Pass/Fail | [ ] |
| Executed by | ____________ Date: ________ |

### IQ-002: Package Inventory
| Package | Required Version | Installed Version | Pass/Fail |
|---------|-----------------|-------------------|-----------|
| dplyr | 1.1.4 | | [ ] |
| ggplot2 | 3.5.0 | | [ ] |
| survival | 3.7-0 | | [ ] |

## 4. Deviations
[Document any deviations from expected results and their resolution]

## 5. Conclusion
[ ] All IQ tests PASSED - system installation verified
[ ] IQ tests FAILED - see deviation section

得：validation/iq/iq_protocol.md 完含獨文 ID、意、前置察清、R 裝與每須包之試例、偏節、批欄。

敗：機構要異式→改模合現 SOP。關欄（要、程、期果、實果、過/敗）必保。

二：書 OQ 綱

# Operational Qualification Protocol
**Document ID**: OQ-PROJ-001

## 1. Objective
Verify that the system operates correctly under normal conditions.

## 2. Test Cases

### OQ-001: Data Import Functionality
| Field | Value |
|-------|-------|
| Requirement | System correctly imports CSV files |
| Test Data | validation/test_data/import_test.csv (MD5: abc123) |
| Procedure | Execute `read.csv("import_test.csv")` |
| Expected | Data frame with 100 rows, 5 columns |
| Actual Result | ______________________ |
| Evidence | Screenshot/log file reference |

### OQ-002: Statistical Calculations
| Field | Value |
|-------|-------|
| Requirement | t-test produces correct results |
| Test Data | Known dataset: x = c(2.1, 2.5, 2.3), y = c(3.1, 3.5, 3.3) |
| Procedure | Execute `t.test(x, y)` |
| Expected | t = -5.000, df = 4, p = 0.00753 |
| Actual Result | ______________________ |
| Tolerance | ±0.001 |

### OQ-003: Error Handling
| Field | Value |
|-------|-------|
| Requirement | System handles invalid input gracefully |
| Procedure | Execute `analysis_function(invalid_input)` |
| Expected | Informative error message, no crash |
| Actual Result | ______________________ |

得：validation/oq/oq_protocol.md 含數入、統算、誤處之試例，各附特試數、期果（應時附容差）、證要。

敗：試數未備→建合性試數附已知性。錄數生法以使果可獨驗。

三：書 PQ 綱

# Performance Qualification Protocol
**Document ID**: PQ-PROJ-001

## 1. Objective
Verify the system performs as intended with real-world data and workflows.

## 2. Test Cases

### PQ-001: End-to-End Primary Analysis
| Field | Value |
|-------|-------|
| Requirement | Primary endpoint analysis matches reference |
| Test Data | Blinded test dataset (hash: sha256:abc...) |
| Reference | Independent SAS calculation (report ref: SAS-001) |
| Procedure | Execute full analysis pipeline |
| Expected | Estimate within ±0.001 of reference |
| Actual Result | ______________________ |

### PQ-002: Report Generation
| Field | Value |
|-------|-------|
| Requirement | Generated report contains all required sections |
| Procedure | Execute report generation script |
| Checklist | |
| | [ ] Title page with study information |
| | [ ] Table of contents |
| | [ ] Demographic summary table |
| | [ ] Primary analysis results |
| | [ ] Appendix with session info |

得：validation/pq/pq_protocol.md 含端到端試例用實（或代）數，果對獨參算（如 SAS 出）較。容差明定。

敗：獨參果未備→錄隙、用雙編（二獨 R 實）為替驗法。標 PQ 為暫至獨驗畢。

四：書資報

行綱後，錄果：

# Installation Qualification Report
**Document ID**: IQ-RPT-001
**Protocol Reference**: IQ-PROJ-001

## 1. Summary
All IQ test cases were executed on [date] by [name].

## 2. Results Summary
| Test ID | Description | Result |
|---------|-------------|--------|
| IQ-001 | R Installation | PASS |
| IQ-002 | Package Inventory | PASS |

## 3. Deviations
None observed.

## 4. Conclusion
The installation of R 4.5.0 and associated packages has been verified
and meets all specified requirements.

## 5. Approvals
| Role | Name | Signature | Date |
|------|------|-----------|------|
| Executor | | | |
| Reviewer | | | |
| Approver | | | |

得：資報（IQ、OQ、PQ）完附諸試果填、偏錄（或「無」）、結述、批簽欄待簽。

敗：行中試敗→各敗錄為偏附根因析與解。觀敗時偏節勿空。

五：可處自動

建生證之自動試本：

# validation/scripts/run_iq.R
sink("validation/iq/iq_evidence.txt")
cat("IQ Execution Date:", format(Sys.time()), "\n\n")

cat("IQ-001: R Version\n")
cat("Result:", R.version.string, "\n")
cat("Status:", ifelse(R.version$major == "4" && R.version$minor == "5.0",
                      "PASS", "FAIL"), "\n\n")

cat("IQ-002: Package Versions\n")
required <- renv::dependencies()
installed <- installed.packages()
# ... comparison logic
sink()

得：validation/scripts/ 中自動本生證檔（如 iq_evidence.txt）附時戳果於每試例，減手入確可重。

敗：自動本因境異敗→手行並以 sink() 捕出。資報中錄自動與手行間異。

驗

• 諸綱有獨文 ID
• 綱參驗計
• 試例有清過/敗標
• 報含諸行試果
• 偏錄附解
• 批簽得
• 文從機構 SOP 模

忌

• 受標含混：「系為正」非可試。明特期值
• 缺證：每試果須支證（截、日、出檔）
• 偏處不全：諸敗須錄、究、解
• 文無版控：驗文如碼須變控
• 略重資：系更（R 版、包更）須重資評

參

• setup-gxp-r-project - 驗境之案構
• implement-audit-trail - 電記跡
• validate-statistical-output - 出驗法