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VeOmni Transformers v5 Patchgen Protocol

Purpose: add or refresh a model's patchgen-generated modeling under veomni/models/transformers/<model>/generated/. VeOmni pins transformers==5.9.0 and ships patchgen-generated modeling for every supported model; legacy v4 monkey-patches have been retired.

References (read first, load on demand):

• docs/transformers_v5/index.md — overview of what v5 migration covers
• docs/transformers_v5/patchgen.md — patchgen DSL, CLI, CI drift check
• docs/transformers_v5/transformers_v5_moe_weight_loading.md — MoE fused-expert layout + runtime converter
• docs/transformers_v5/veomni_flash_attention_kernel_adapter.md — FA custom-name adapter
• docs/transformers_v5/testing_new_model.md — v5 test case SOP

Working examples (copy the structure, do not edit generated/):

Examples grouped by complexity / capability — pick the closest one and adapt:

• Text LLM (dense) — veomni/models/transformers/qwen3/, veomni/models/transformers/llama/, veomni/models/transformers/qwen2/, veomni/models/transformers/seed_oss/
  • __init__.py — registers a patchgen-generated <Model>ForCausalLM / <Model>Model / <Model>ForSequenceClassification via MODELING_REGISTRY.
  • <m>_gpu_patch_gen_config.py — Liger + SP + fused-CE patches. Llama is the minimal reference (5 OpSlot patches: RMSNorm, MLP, RoPE, ForCausalLM, ForSequenceClassification — no SP or MoE specifics).
• Text LLM with NPU patchgen — veomni/models/transformers/seed_oss/
  • __init__.py — branches on IS_NPU_AVAILABLE between patched_modeling_seed_oss_{gpu,npu}.
  • Sibling configs produce separate generated/*_{gpu,npu}.py outputs.
• MoE — veomni/models/transformers/qwen3_moe/
  • __init__.py — attaches _create_checkpoint_tensor_converter as a staticmethod on every patchgen-generated class.
  • qwen3_moe_gpu_patch_gen_config.py — replaces Qwen3MoeExperts with the fused-MoE layout and overrides get_parallel_plan.
  • checkpoint_tensor_converter.py — HF per-expert → fused runtime converter.
  • parallel_plan.py — single get_parallel_plan() sharding the fused gate_up_proj.
• MoE + NPU patchgen — veomni/models/transformers/deepseek_v3/
  • Sibling deepseek_v3_{gpu,npu}_patch_gen_config.py; both generated files committed.
  • Runtime kernel choice (deterministic Triton RoPE + batch-invariant RMSNorm) is wired in __init__.py via apply_veomni_deepseek_v3_device_patch(gen_module) for actor/rollout numerical parity. No Liger kernels in the generated file itself.
• VLM (non-MoE) + GPU+NPU patchgen — veomni/models/transformers/qwen3_vl/
  • __init__.py — registers the patchgen-generated classes, branching on IS_NPU_AVAILABLE between patched_modeling_qwen3_vl_{gpu,npu}.
  • qwen3_vl_gpu_patch_gen_config.py — full VLM forward with Ulysses SP, async Ulysses text attention, deepstack, precomputed mrope via get_position_id_func, and a SP-aware dummy_forward.
  • qwen3_vl_npu_patch_gen_config.py — demonstrates the NPU-inherits-GPU pattern: a thin NPU config that extends gpu_config.helpers / gpu_config.post_import_blocks / gpu_config.additional_imports and only overrides RMSNorm / rotary with torch_npu.npu_rms_norm / torch_npu.npu_rotary_mul. Avoids duplicating ~1K lines of shared VLM SP/deepstack patches.
• Omni (thinker+talker subtree, non-MoE) — veomni/models/transformers/qwen2_5_omni/
  • __init__.py — imports Qwen2_5OmniForConditionalGeneration / Qwen2_5OmniThinkerForConditionalGeneration from the patchgen-generated module and Qwen2_5OmniTalkerModel / Qwen2_5OmniTalkerForConditionalGeneration directly from transformers.models.qwen2_5_omni.modeling_qwen2_5_omni (talker classes are excluded from the generated file but the registry still needs to return them when architecture mentions Talker...). MODEL_CONFIG_REGISTRY applies the tie_word_embeddings=False config patch.
  • qwen2_5_omni_gpu_patch_gen_config.py — the canonical non-MoE Omni template: excludes talker + token2wav + DiT + BigVGAN subtrees, overrides _init_weights to drop excluded UpSample1d/DownSample1d branches, overrides ForConditionalGeneration.__init__ to force has_talker=False and pin _no_split_modules=[DecoderLayer, VisionBlock, AudioEncoderLayer] (use a list[str] to match the upstream HF convention — modeling_utils.py converts it to a set internally, so either works at runtime, but staying with list[str] keeps the patched class isomorphic with the upstream base class attr), registers a load-state-dict pre-hook to strip talker.*/token2wav.* keys, overrides enable_talker/generate to raise NotImplementedError, and forwards ForConditionalGeneration.forward to thinker only — minus all MoE/EP machinery (no replace_class("…Experts"), no parallel_plan.py, no checkpoint_tensor_converter.py). Thinker uses Qwen2_5OmniThinkerCausalLMOutputWithLogProbs from veomni.utils.model_outputs to carry log_probs/entropy as constructor fields (same FSDP2 unshard-hook rationale as qwen3_omni_moe). Audio encoder uses 1D convs (conv1/conv2) — pull dummy-forward dtype from self.conv1.weight.dtype, not self.conv2d1 (that's qwen3_omni_moe-specific).
  • No parallel_plan.py / no checkpoint_tensor_converter.py — qwen2.5-Omni's thinker text model is dense (Qwen2-class MLP, not MoE), so neither EP nor fused-expert weight conversion applies. If you start from the qwen3_omni_moe template and forget to delete these, you'll get import errors from dangling references.
• VLM + MoE + GPU+NPU patchgen — veomni/models/transformers/qwen3_vl_moe/
  • __init__.py — registers three classes (Qwen3VLMoeForConditionalGeneration, Qwen3VLMoeModel, Qwen3VLMoeTextModel) and attaches _create_checkpoint_tensor_converter as a staticmethod on each (the inner text submodel is also loadable standalone and must carry the converter).
  • qwen3_vl_moe_gpu_patch_gen_config.py — minimal config that imports most VLM SP / deepstack / async-Ulysses / dummy_forward patches from qwen3_vl via name_map={"Qwen3VL": "Qwen3VLMoe"}, and only writes MoE-specific deltas: replace_class("Qwen3VLMoeExperts") with fused layout, override_method("Qwen3VLMoeModel.__init__") to propagate _moe_implementation into config.text_config, a hand-cloned Qwen3VLMoeModel.forward (see below), Qwen3VLMoeForConditionalGeneration.forward with fused loss + aux_loss, and get_parallel_plan. This is the canonical template for any new VLM+MoE migration. Exception — do NOT reuse Model.forward via name_map: Qwen3VLMoeModelOutputWithPast carries an extra router_logits field absent from the dense Qwen3VLModelOutputWithPast; rewriting class names at the AST level keeps the dense constructor's argument list, silently dropping router_logits and collapsing MoE routing. Clone the forward body and hand-author the return.
  • checkpoint_tensor_converter.py — HF ships fused expert tensors under the same key names as VeOmni but in transposed layout ([E, H, 2*I] vs [E, 2*I, H]). Uses dim-1 shape dispatch to recognize HF vs VeOmni layout, passes VeOmni-native tensors through untouched, and hard-errors on unrecognized shapes — see Phase 3 "round-trip safety".
• Text + linear attention (qwen3_5) / VLM + MoE (qwen3_5_moe) — veomni/models/transformers/qwen3_5/, qwen3_5_moe/
  • qwen3_5_moe_gpu_patch_gen_config.py — demonstrates config.drop_import_names(...), config.add_post_import_block(...), cross-config reuse via from ...qwen3_5.qwen3_5_gpu_patch_gen_config import <fn>, and name_map={"Qwen3_5": "Qwen3_5Moe"} on override_method to share patches between sibling configs.
• MLA + MoE (GLM) — veomni/models/transformers/glm_moe_dsa/
  • Sibling glm_moe_dsa_{gpu,npu}_patch_gen_config.py produces separate generated/*_{gpu,npu}.py outputs.

Phase 0: Environment + Reference Setup

0.1 Verify transformers venv

Patchgen runs against transformers==5.9.0. Before touching code:

source .venv/bin/activate
python -c "import transformers; print(transformers.__version__)"

If not 5.9.0, re-sync the default env:

uv sync --frozen --extra gpu --group dev
source .venv/bin/activate

0.2 (Strongly recommended) Drop HF reference source into .agents_workspace/

.agents_workspace/ is gitignored. Keeping the upstream HF source next to your patchgen config is the single biggest accelerator for catching subtle signature/contract drift while iterating.

mkdir -p .agents_workspace/hf_reference/<m>/v5_8_1

curl -sL -o .agents_workspace/hf_reference/<m>/v5_8_1/modeling_<m>.py \
  "https://github.com/huggingface/transformers/raw/v5.9.0/src/transformers/models/<m>/modeling_<m>.py"

For VLMs also grab processing_<m>.py / image_processing_<m>.py / configuration_<m>.py if you expect processor-side or config-shape work.

If you are refreshing an existing patchgen-generated file across a transformers minor bump (e.g. the current pin 5.9.0 → 5.9.0), pull both versions side-by-side and diff to spot contract drift — substitute the <old_ver> / <new_ver> tags with the actual versions you are migrating between:

mkdir -p .agents_workspace/hf_reference/<m>/{old,new}
curl -sL -o .agents_workspace/hf_reference/<m>/old/modeling_<m>.py \
  "https://github.com/huggingface/transformers/raw/<old_ver>/src/transformers/models/<m>/modeling_<m>.py"
curl -sL -o .agents_workspace/hf_reference/<m>/new/modeling_<m>.py \
  "https://github.com/huggingface/transformers/raw/<new_ver>/src/transformers/models/<m>/modeling_<m>.py"
diff -u .agents_workspace/hf_reference/<m>/{old,new}/modeling_<m>.py | less

Things to watch for in upstream contracts:

• @can_return_tuple, @capture_outputs, @merge_with_config_defaults, @auto_docstring decorators → affect behavior of your override_method. When you override_method on a @auto_docstring-decorated method, every parameter you declare in the new signature must also appear in the patched docstring's Args: block — otherwise auto_docstring will emit warnings at import time about "undocumented parameter". For Omni-style overrides that add params like audio_feature_lengths, feature_lens, aftercnn_lens, rope_deltas, image_grid_thw, video_grid_thw, etc., copy the upstream docstring and append minimal one-line entries for every new param.
• Helper-method signatures (e.g. get_placeholder_mask takes inputs_embeds
  • image_features / video_features).
• Return-shape conventions: e.g. get_{image,video}_features.pooler_output is a tuple[per-image tensor] after torch.split, not a flat tensor.
• Packed position-ids contract ([4, bs, seq-len] with prepended text_position_ids).
• RoPE shape collapse — VLMs use apply_interleaved_mrope (and similar helpers) that collapse the leading 3-axis of mrope before layers see cos/sin, so the shape is (bs, seq_len, head_dim). Any SP path that gathers cos/sin across the sequence dim (async Ulysses, ring attention) must use the correct gather_dim. Grep upstream for interleaved_mrope, mrope_section, or any pre-attention RoPE reshape before writing the patch.
• attention_mask may be a dict — HF v5 routinely passes attention_mask={"full_attention": <tensor>, ...} keyed by attention type. Any patched forward that forwards attention_mask to compute_3d_position_ids / get_rope_index / other tensor-expecting helpers must defensively unwrap attention_mask.get("full_attention", None) when it's a dict.

Keep this directory around through commit; delete it after the PR merges (it's already gitignored so it won't leak into the repo).

Before You Start: Create Todos

Use TodoWrite to track phases. Suggested plan:

Phase 0: Verify venv + drop HF reference files       -> in_progress
Phase 1: Scope & audit upstream surface              -> pending
Phase 2: Draft <model>_gpu_patch_gen_config.py       -> pending
Phase 3: (MoE only) Add checkpoint converter         -> pending
Phase 4: Wire __init__.py to expose generated classes -> pending
Phase 5: Run patchgen + verify diff                   -> pending
Phase 6: Add test cases                               -> pending
Phase 7: Run tests (single-GPU + e2e)                 -> pending
Phase 8: Docs + /veomni-review + commit               -> pending

Drop phases that don't apply (e.g. Phase 3 for non-MoE models).

Phase 1: Scope & Audit

Input: model name <M> (e.g. qwen3_5, glm4_moe).

Operations:

1. Confirm model exists at veomni/models/transformers/<M>/. If not, the task is "add new model" — use /veomni-new-model instead.
2. If a patchgen-generated file already exists under veomni/models/transformers/<M>/generated/ you are refreshing an existing config (e.g. picking up upstream changes, adding NPU sibling, fixing a bug). Otherwise you are adding patchgen support to a model whose __init__.py previously imported HF classes directly. Either way, the rest of this protocol applies identically.
3. Decide backend coverage:
   • GPU only → one <m>_gpu_patch_gen_config.py + one generated/patched_modeling_<m>_gpu.py.
   • GPU + NPU → add sibling <m>_npu_patch_gen_config.py that writes generated/patched_modeling_<m>_npu.py; mirror the glm_moe_dsa or qwen3_vl layout.
4. Check model category:
   • Text-only LLM → reference qwen3/ (or llama/ for the minimal example)
   • MoE → reference qwen3_moe/ (plus converter work in Phase 3)
   • VLM (non-MoE) → reference qwen3_vl/
   • VLM + MoE → reference qwen3_vl_moe/ (multimodal forward + SP scatter, ViT dummy forward, Flash-attn kwargs popping, get_position_id_func)
   • Omni (non-MoE thinker + speech subtree to exclude) → reference qwen2_5_omni/ (audio/vision SP + dummy_forward, talker/token2wav/BigVGAN exclusion, log_probs/entropy output dataclass, no parallel_plan/converter)
   • Omni MoE → reference qwen3_omni_moe/
5. Check upstream source (from transformers.models.<m> import modeling_<m>). Confirm class/function names still exist; MoE expert layouts especially diverge between sibling models — see transformers_v5_moe_weight_loading.md.
6. Note related configs/loaders to preserve: MODELING_REGISTRY, MODEL_CONFIG_REGISTRY in veomni/models/loader.py; any auto-config registrations.
7. Look for a sibling model you can borrow patches from: e.g. qwen3_5_moe reuses GatedDeltaNet/ViT patches from qwen3_5 via direct import + name_map={"Qwen3_5": "Qwen3_5Moe"}. Prefer reuse over copy-paste when the upstream classes are structural duplicates with only a name-prefix difference.

Validation: you have a concrete list of patches to apply, the reference model directory to mirror, and the backend/category decision pinned down.

Phase 2: Draft <M>_gpu_patch_gen_config.py

Create veomni/models/transformers/<M>/<M>_gpu_patch_gen_config.py at the model root.

Skeleton (mirror qwen3_gpu_patch_gen_config.py):

from veomni.patchgen.patch_spec import PatchConfig, create_patch_from_external

config = PatchConfig(
    source_module="transformers.models.<m>.modeling_<m>",
    target_file="patched_modeling_<m>_gpu.py",
    description="<M> with LigerKernel GPU replacements + VeOmni SP/fused-loss patches",
)

Patch primitives:

Pruning inactive subtrees (e.g. talker / code2wav in an omni model where training only uses the thinker): use config.exclude_from_output(<Class>, ...) to drop classes entirely from the generated file. This has three downstream ripples you must clean up in the same patch config — otherwise make quality or import will fail on the regenerated output:

• _init_weights isinstance(...) branches — upstream's <M>PreTrainedModel._init_weights typically has one elif isinstance(module, <ExcludedClass>) branch per leaf init. Override it (@config.override_method("<M>PreTrainedModel._init_weights")) and drop every branch that references an excluded class.
• Public methods whose bodies reference excluded classes — e.g. enable_talker constructs the talker. Override it to raise NotImplementedError("<what>. Use upstream transformers for <purpose>.") so callers get a clear message instead of an F821/NameError at import.
• __all__ is auto-filtered by veomni/patchgen/codegen.py — any excluded class name is removed from the generated __all__ list automatically, so you don't need a manual drop_import_names dance for it.
• Transitively-dead helper classes — activations / small utility modules used only by classes you just excluded will still land in the generated file as dead code. Grep the generated output for each excluded class's private helpers and add them to exclude_from_output too. Example: SnakeBeta is only referenced by Qwen3OmniMoeCode2WavDecoderResidualUnit; excluding Code2Wav without also excluding SnakeBeta leaves ~40 lines of dead code in generated/. For qwen2_5_omni's BigVGAN vocoder, UpSample1d/DownSample1d are referenced both by Token2Wav residual blocks (caught by exclusion) and by the base _init_weights method via isinstance checks (NOT caught — ast.walk doesn't trace isinstance strings). After excluding the speech subtree, always rg "isinstance\(.*<excluded_class>" generated/ and override the methods that still reference excluded names.
• _init_weights referencing excluded classes — base PreTrainedModel._init_weights often has isinstance(module, <SpeechHeadClass>) / <UpSample1d> / <SnakeBeta> branches that init excluded modules. These do not generate a patchgen warning but explode at first model build with NameError: name 'X' is not defined (ruff also flags as F821). Always override _init_weights to drop branches that touch excluded classes — see qwen2_5_omni's override that strips UpSample1d/DownSample1d branches.
• Upstream generate() with mutable default arg — Omni models like qwen2_5_omni define generate(..., talker_eos_token_id: list[int] = [8292, 8294], ...) which ruff B006 rejects when copied verbatim into the generated file. Since the speech path is excluded anyway, override <M>ForConditionalGeneration.generate to raise NotImplementedError("...generate is disabled in the VeOmni training modeling (talker / token2wav are excluded). Use upstream transformers for TTS generation."). This double-serves to kill the lint and make the contract explicit.

See qwen3_omni_moe_gpu_patch_gen_config.py (MoE thinker) and qwen2_5_omni_gpu_patch_gen_config.py (dense thinker) for the canonical templates. Both exclude the whole speech subtree plus the dead-after-exclusion activations (SnakeBeta for qwen3_omni_moe; UpSample1d/DownSample1d for qwen2_5_omni's BigVGAN), override _init_weights to drop the excluded-module branches, override enable_talker to raise, and (for qwen2_5_omni) also override ForConditionalGeneration.generate to raise NotImplementedError — upstream's generate(...) signature has a mutable default arg (talker_eos_token_id: list[int] = [...]) that trips ruff B006 in the generated file, and the TTS path is excluded anyway.

Cross-config reuse pattern (qwen3_5_moe reusing qwen3_5):

from veomni.models.transformers.qwen3_5.qwen3_5_gpu_patch_gen_config import (
    qwen3_5_gated_deltanet_forward_patched,
    qwen3_5_vision_model_forward,
    # ...
)

_NAME_MAP = {"Qwen3_5": "Qwen3_5Moe"}
config.override_method(
    "Qwen3_5MoeGatedDeltaNet.forward",
    replacement=qwen3_5_gated_deltanet_forward_patched,
    name_map=_NAME_MAP,
    description="...",
)

name_map rewrites symbol references inside the replacement body so the shared function transparently targets the correct class namespace. Use it to avoid duplicating ~hundreds of lines per sibling model.

Common v5 patch set (steal from qwen3):

• create_patch_from_external → LigerRMSNorm replacing <M>RMSNorm (for models with a "1 + weight" centered RMSNorm formulation — e.g. Qwen3Next variants — use LigerRMSNormForQwen3Next instead; check the upstream RMSNorm definition).
• create_patch_from_external → LigerSwiGLUMLP replacing <M>MLP.
• @config.replace_function("apply_rotary_pos_emb") → liger_rotary_pos_emb. Exception: do NOT replace rotary when the model uses partial rotary (partial_rotary_factor < 1.0) or mrope_interleaved=True — liger applies RoPE to the full head_dim and produces NaN. Qwen3_5Moe explicitly skips this; leave an inline comment in the patchgen config when you do.
• @config.override_method("<M>Model.forward") → keep SP-friendly shape handling.
• @config.override_method("<M>ForCausalLM.forward") (or ForConditionalGeneration.forward for VLM) → fused cross-entropy path via self.loss_function(logits=logits, labels=labels, vocab_size=..., hidden_states=..., weights=self.lm_head.weight, **kwargs). Note VLM top-level models use config.text_config.vocab_size, not config.vocab_size.
• MoE expert replacement — @config.replace_class("<M>Experts") with gate_up_proj [E, 2*I, H] + down_proj [E, H, I] + fused_moe_forward(...) branching on _moe_implementation in {"eager", "fused"}. See qwen3_moe and qwen3_5_moe (the latter also removes the upstream @use_experts_implementation decorator which would otherwise re-route around our fused path).
• MoE top-level init propagation — v5 often wraps a text_config under a top model. You must propagate _moe_implementation from config to config.text_config before super().__init__(config), via a @config.override_method("<M>Model.__init__") patch (see qwen3_5_moe).
• MoE expert parallel plan — @config.override_method("<M>ForCausalLM.get_parallel_plan") (or ForConditionalGeneration.get_parallel_plan) returning parallel_plan.get_parallel_plan(). parallel_plan.py shards the fused model.layers.*.mlp.experts.gate_up_proj (Shard(0)) — see qwen3_moe/parallel_plan.py for the canonical template.
• VLM/multimodal forward — replicate qwen3_5_moe's pattern (VLM+MoE) or qwen3_vl's (VLM, non-MoE): pop LM-level flash-attn kwargs before ViT call, transpose seq↔head layout for Ulysses SP, shard image/video embeds, shard placeholder masks, and transpose back. Add @config.override_method("<M>ForConditionalGeneration.get_position_id_func") via an add_post_import_block that defines the helper get_position_id in generated scope (module-level, so multiprocessing can pickle it).
• Multimodal metadata precompute — to keep the ViT forward host-device-sync free, derive ViT cu_seqlens / max_seqlen in the collator, not the forward. See .agents/knowledge/multimodal_metadata.md for the full contract. Checklist for a new VLM:
  1. Add a module-level collate_multimodal_metadata(batch, sp_pad) helper (@config.add_helper) — read batch["image_grid_thw"] / ["video_grid_thw"], .tolist(), derive vit_*_cu_seqlens / vit_*_max_seqlen (+ the sp_pad tail entry), write batch["multimodal_metadata"].
  2. @config.override_method("<M>ForConditionalGeneration.get_metadata_collate_func") returning that helper (or a partial over it if the formula needs config).
  3. Optional get_extra_collate_infos override_method for audio / extra feature tensors (Omni).
  4. Model.forward: pop multimodal_metadata, build the per-modality vit_metadata sub-dict (grid_thw_list / cu_seqlens / max_seqlen), pass to get_image_features / get_video_features.
  5. ViT.forward: pop the single vit_metadata kwarg; consume the precomputed values with a runtime fallback (in-forward .tolist() / cu_seqlens build) for callers that bypass MainCollator.
  6. dummy_forward (FSDP path): build the vit_metadata sub-dict host-side.
  7. Add the model to _MM_METADATA_WIRED_CASES in tests/models/test_model_forward_no_implicit_sync.py. When SP is enabled and you need to all-gather input_ids (or any tensor that went through MainCollator's pack_dim=-1 path) back to full seq on each rank, use torch.cat(list, dim=1) — the collator's PackingCollator.__call__ does torch.cat(..., dim=pack_dim).unsqueeze(0) (see veomni/data/data_collator.py:246-248), so the shape at model forward is [1, seq_per_rank], not flat [seq_per_rank]. Using dim=0 would wrongly produce [sp_size, seq_per_rank] and silently break downstream mask slicing.
• DecoderLayer varlen metadata — if the model has linear-attention / Mamba / GatedDeltaNet layers, override <M>DecoderLayer.forward to pass cu_seq_lens_q through (see qwen3_5_moe), and import cu-free FLA impls via add_post_import_block with a try/except fallback.

Flash attention: VeOmni custom names (veomni_flash_attention_{2,3,4}_with_sp) are handled globally by transformers.integrations.hub_kernels.load_and_register_attn_kernel adapter — no per-model patching needed. Just keep attn_implementation names unchanged in configs. See veomni_flash_attention_kernel_adapter.md.

Patch comment style:

Every decorated patch function / replaced class must be preceded by a numbered header block enumerating what changed and why, and every modified region inside the body must be bracketed by inline # --- Patch.N --- markers that correspond to the header numbers. The comments survive into the generated patched_modeling_*.py, giving reviewers a self-documenting diff against the upstream HF source.

# ================================================================
# Patch: <Class>.<method>
# 1. <what changed> — <why>
# 2. <next change>  — <why>
# ================================================================
@config.override_method("<Class>.<method>", description="...")
def <name>_patched(self, ...):
    ...
    # --- Patch.1 ---
    <modified region>
    # --- Patch.1 ---
    ...
    # --- Patch.2 ---
    <other modified region>
    # --- Patch.2 ---

Guidelines:

• Header numbering is local to the function; reuse the same number for all inline markers that belong to the same logical change.
• For removed/replaced upstream lines, keep the original as a commented line inside the # --- Patch.N --- block (see qwen2_5_vl_gpu_patch_gen_config.py's vision-attention max_seqlen patch) so the diff against HF is self-documenting.
• Mention upstream-contract subtleties explicitly (e.g. BaseModelOutputWithPooling return type, pooler_output tuple-of-tensors) — these are the most common source of regressions when HF bumps minor versions.

Regen command (put at top of file as docstring, mirror qwen3):

patchgen \
    veomni.models.transformers.<m>.<m>_gpu_patch_gen_config \
    -o veomni/models/transformers/<m>/generated --diff

Validation: file is syntactically valid (import it: python -c "import veomni.models.transformers.<m>.<m>_gpu_patch_gen_config") and every behaviour identified in Phase 1 has a corresponding decorator here.

Phase 3: MoE Checkpoint Tensor Converter (MoE models only)

Skip for text-only LLMs.

V5 MoE uses fused expert tensors gate_up_proj [E, 2*I, H] + down_proj [E, H, I], but HF safetensor checkpoints may ship either per-expert split keys or pre-fused keys (sometimes transposed) depending on the model. A runtime converter avoids the old scripts/moe_ckpt_merge/moe_merge.py offline step.

Verify the HF source layout empirically BEFORE picking a template — do not infer it from model family / sibling converter docstrings, because those have been copy-pasted across unrelated layout families in the past (e.g. the initial qwen3_omni_moe converter shipped a qwen3_vl_moe-style transposer while the real checkpoint had per-expert split keys — silent load failure).

Two authoritative sources:

1. HF's own mapping — transformers/conversion_mapping.py::_MODEL_TO_CONVERSION_PATTERN points the model_type at a WeightConverter recipe:
   • "qwen2_moe" recipe = MergeModulelist(dim=0) + Concatenate(dim=1) → source is per-expert split → qwen3_moe-style template.
   • "qwen3_vl_moe" recipe = Transpose(1, 2) → source is pre-fused, transposed → qwen3_vl_moe-style template.
   • No entry or pass-through → source is pre-fused, direct v5 layout → no converter needed (qwen3_5_moe-style). Cross-family aliases are common: qwen3_omni_moe → qwen2_moe, deepseek_v3 → qwen2_moe, etc. Always resolve the alias before choosing.
2. A real checkpoint's index — sanity-check by grepping <ckpt>/model.safetensors.index.json:

   python3 -c "
   import json, sys
   idx = json.load(open(sys.argv[1]))
   per_expert = sum(1 for k in idx['weight_map'] if '.experts.' in k and k.endswith('gate_proj.weight'))
   fused      = sum(1 for k in idx['weight_map'] if k.endswith('.experts.gate_up_proj'))
   print(f'per-expert keys: {per_expert}, fused keys: {fused}')
   " <ckpt_path>/model.safetensors.index.json
   

   If per-expert > 0 → qwen3_moe-style. If fused > 0 → inspect one tensor's shape to distinguish transposed (qwen3_vl_moe-style) from direct v5 (no converter).

Pick the template by the verified HF layout, not by model family:

• HF ships per-expert split keys (*.mlp.experts.{j}.{gate|up|down}_proj.weight) → template = veomni/models/transformers/qwen3_moe/checkpoint_tensor_converter.py. The regex only matches HF-side keys, so a v5-saved fused-key checkpoint passes through the converter untouched — no round-trip hazard.
• HF ships fused expert keys with same names as v5 (*.mlp.experts.{gate_up_proj|down_proj} at the module level, not per-expert) → template = veomni/models/transformers/qwen3_vl_moe/checkpoint_tensor_converter.py. Key names collide with v5 output, so you must use shape-based dispatch (see "Round-trip safety" below); blindly transposing corrupts v5-saved ckpts.

Steps:

1. Copy the matching template above.
2. Update the regex _EXPERT_PATTERN to match your upstream key layout.
3. Update merge order / transpose for the HF-side layout. Three layouts exist — see table in transformers_v5_moe_weight_loading.md:
   • qwen3_moe: per-expert split → stack on dim 0.
   • qwen3_vl_moe: fused, transposed ([E, H, 2*I] / [E, I, H]) → transpose(1, 2).
   • qwen3_5_moe: fused, direct ([E, 2*I, H] / [E, H, I]) → no-op (no converter needed).
4. Export a factory create_<m>_checkpoint_tensor_converter(model):
   • Keyed on num_experts + (for fused-key converters) hidden_size + intermediate_size.
   • Resolve the text config defensively: text_config = getattr(model.config, "text_config", model.config). VLM-MoE submodels (e.g. Qwen3VLMoeTextModel) are loaded standalone with a flat <M>TextConfig that has no text_config attribute; top-level <M>Model / <M>ForConditionalGeneration have a nested one. Both paths must work because Pattern B registers the converter on all three classes.
5. Implement can_handle, convert, and finalize — finalize must raise on any unflushed per-expert or stacked buffer (indicates corrupt/partial ckpt).

Round-trip safety (fused-key converters only):

When HF and v5 use identical expert key names but different axis orders (qwen3_vl_moe pattern), the converter will be invoked on both HF-original checkpoints and v5-saved checkpoints (VeOmni's save path can emit either format). Dispatch on the dim-1 shape:

• gate_up_proj: HF has dim-1 == hidden_size, v5 has dim-1 == 2 * intermediate_size.
• down_proj: HF has dim-1 == intermediate_size, v5 has dim-1 == hidden_size.

For any realistic config, these four numbers are pairwise distinct, so the dispatch is unambiguous. Transpose only when dim-1 matches the HF expectation; pass through when it matches v5; raise on anything else rather than silently corrupting weights. See qwen3_vl_moe/checkpoint_tensor_converter.py for the canonical implementation.

Validation: on a toy checkpoint with per-expert keys, the converter emits exactly one experts.gate_up_proj and one experts.down_proj per layer and finalize() returns [] without raising. For fused-key converters, also validate that a v5-saved checkpoint round-trips: feed [E, 2*I, H] / [E, H, I] tensors through and confirm they come out identical (no transpose applied).

Phase 4: Wire __init__.py

Pick one of three patterns based on Phase 1's backend + capability decision.

Pattern A — text LLM / dense (qwen3 style):

from ...loader import MODELING_REGISTRY


@MODELING_REGISTRY.register("<m>")
def register_<m>_modeling(architecture: str):
    from .generated.patched_modeling_<m>_gpu import (
        <M>ForCausalLM,
        <M>Model,
    )

    if "ForCausalLM" in architecture:
        return <M>ForCausalLM
    return <M>Model

Pattern B — MoE (qwen3_moe style): same as A, plus register the converter on each generated model class:

from .checkpoint_tensor_converter import create_<m>_checkpoint_tensor_converter

for model_cls in (<M>ForCausalLM, <M>Model, ...):
    model_cls._create_checkpoint_tensor_converter = staticmethod(
        create_<m>_checkpoint_tensor_converter
    )

staticmethod(...) is required — the loader calls it as model._create_checkpoint_tensor_converter(model).

Pattern C — GPU + NPU sibling (glm_moe_dsa / qwen3_vl style): branch on IS_NPU_AVAILABLE between the two generated modules:

from ....utils.device import IS_NPU_AVAILABLE
from ...loader import MODELING_REGISTRY


@MODELING_REGISTRY.register("<m>")
def register_<m>_modeling(architecture: str):
    if IS_NPU_AVAILABLE:
        from .generated.patched_modeling_<m>_npu import <M>ForCausalLM, <M>Model
    else:
        from .generated.patched_modeling_<m>_gpu import <M>ForCausalLM, <M>Model

    if "ForCausalLM" in architecture:
        return <M>ForCausalLM
    return <M>Model

Rules:

• All logic lives in the patchgen config + generated file. Do not create hand-written modeling_<m>.py / gpu_patch.py / npu_patch.py — those files have been retired across the codebase.
• For NPU (Pattern C): write a separate <m>_npu_patch_gen_config.py — do not toggle GPU vs NPU kernels inside a single config via runtime ifs.

Phase 5: Run Patchgen + Verify Diff

1. Regenerate:

   patchgen \
       veomni.models.transformers.<m>.<m>_gpu_patch_gen_config \
       -o veomni/models/transformers/<m>/generated --diff -v
   

2. Inspect generated/patched_modeling_<m>_gpu.py:
   • Header lists every patch you defined under "Patches applied".
   • Patched classes/methods carry the # [PATCHED ...] markers.
   • Relative imports (from ...activations) rewritten to absolute (from transformers.activations).
3. Inspect generated/patched_modeling_<m>_gpu.diff — every hunk must correspond to an intentional patch. Unexpected hunks (e.g. whitespace, unrelated classes) indicate a misconfigured patchgen config.
4. make quality / ruff format on the generated file (patchgen pipeline runs ruff, but double-check).
5. Check CI drift guard:

   patchgen --check
   

   Must exit 0. --fix overwrites checked-in files if drift is intentional.
6. If make style / ruff --fix auto-removed unused imports from the generated *.py (this happens when patchgen pulls an import from HF source that the patched version doesn't use, e.g. torch_compilable_check in transformers v5.2), the sibling *.diff file becomes stale against the post-fix *.py. Re-sync with:

   patchgen --check --fix
   

   Do NOT manually re-run patchgen (without --check) to "fix" it — that would re-introduce the unused imports and you'd ping-pong between ruff and patchgen. patchgen --check --fix writes the diff against the post-style-fix .py, which is what CI expects.

Never edit generated/*.py by hand — always go back to the patchgen config and regenerate. This is a hard rule called out in AGENTS.md.

Phase 6: Add Test Cases

Follow docs/transformers_v5/testing_new_model.md. Minimum coverage:

1. Toy config: create tests/toy_config/<m>_toy/config.json (few layers, small hidden/intermediate, tiny vocab). Add a README.md next to it noting source config + changes.
2. tests/models/test_models_patch.py: append an entry to the test cases list with id="<m>" and is_moe=<bool>. If the model lacks certain attention/MoE backends, add a case_id == "<m>" filter block in test_models_patch_fwd_bwd.
3. tests/e2e/test_e2e_parallel.py: append a pytest.param(...). Use max_sp_size=1 if SP not yet supported, else None.
4. VLM only — tests/models/test_vlm_trainer.py: add to the freeze-ViT VLM cases list.
5. VLM / Omni only — tests/distributed/test_dummy_forward.py: add a pytest.param(...) in _vlm_cases (or _omni_cases). Required because patchgen-generated VLMs override <M>VisionTransformerPretrainedModel.dummy_forward (or equivalent) and this test is the only place the FSDP2 asymmetric-forward + dummy_forward hook is exercised on multi-GPU.
6. Text LLM equivalence (optional) — tests/distributed/test_fsdp_equivalence.py covers single-GPU vs FSDP2 grad_norm for text models only. If the model is text-only, append to the text test cases list. VLM/Omni models are out of scop

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