Jsperger LLM R Skills Targets Pipelines

Complex targets Pipelines

Branching creates multiple targets from a single definition. Choose your approach based on when iterations are known and what naming you need.

Quick Reference

Decision Tree

Need multiple similar targets?
│
├─ NO ──► Single target, or consider a target factory
│         for reusable patterns
│
└─ YES ─► Iterations known before tar_make()?
          │
          ├─ NO ──► DYNAMIC BRANCHING
          │         pattern = map() / cross()
          │         → topic-dynamic-branching.md
          │
          └─ YES ─► Need friendly target names in DAG?
                    │
                    ├─ YES ──► STATIC BRANCHING
                    │          tarchetypes::tar_map()
                    │          → topic-static-branching.md
                    │
                    └─ NO ───► Either works; prefer dynamic
                               for simplicity at scale

Additional decisions:

Static variants + many replications?
  └─► HYBRID: tarchetypes::tar_map_rep()
      → topic-hybrid-branching.md

Encapsulating a reusable multi-target pattern?
  └─► TARGET FACTORY: tar_target_raw()
      → topic-target-factories.md

Approach Comparison

Static Branching Overview

Use tarchetypes::tar_map() when iterations are known at define-time and you want readable target names.

values <- tibble::tibble(
  method = rlang::syms(c("analyze_bayesian", "analyze_freq")),
  method_name = c("bayesian", "freq")
)

tarchetypes::tar_map(
  values = values,
  names = "method_name",
  targets::tar_target(result, method(data)),
  targets::tar_target(summary, summarize_result(result))
)
# Creates: result_bayesian, result_freq, summary_bayesian, summary_freq

Aggregate with tarchetypes::tar_combine():

mapped <- tarchetypes::tar_map(
  unlist = FALSE,
  values = values,
  targets::tar_target(result, method(data))
)

tarchetypes::tar_combine(
  all_results,
  mapped[["result"]],
  command = dplyr::bind_rows(!!!.x, .id = "method")
)

Key points:

• Function names must be symbols: use rlang::syms(), not strings
• Use unlist = FALSE when you need tar_combine() afterward
• !!!.x splices the list of upstream results into the command

See topic-static-branching.md for details on tar_eval(), tar_sub(), and complex value construction.

Dynamic Branching Overview

Use the pattern argument when branch count depends on data or you need massive scale.

list(
  targets::tar_target(datasets, c("trial_A", "trial_B", "trial_C")),
  targets::tar_target(
    analysis,
    analyze_data(datasets),
    pattern = map(datasets)
  )
)

Pattern types:

• map(x, y) - parallel iteration (zip)
• cross(x, y) - cartesian product
• slice(x, index = c(1, 3)) - specific elements
• head(x, n = 5) / tail() / sample() - subsets

Critical: Patterns reference target names, not R objects or expressions.

# WRONG: Can't reference external objects
my_vec <- 1:5
targets::tar_target(x, process(my_vec), pattern = map(my_vec))

# CORRECT: Reference upstream target by name
list(
  targets::tar_target(params, 1:5),
  targets::tar_target(result, process(params), pattern = map(params))
)

See topic-dynamic-branching.md for iteration modes, row grouping, and batching.

Hybrid Patterns Overview

Combine static branching (for methods/variants) with dynamic branching (for replications):

values <- tibble::tibble(
  method = rlang::syms(c("method_a", "method_b")),
  method_name = c("a", "b")
)

tarchetypes::tar_map_rep(
  name = sim_result,
  command = method(simulate_data()),
  values = values,
  names = "method_name",
  batches = 10,

  reps = 100
)

See topic-hybrid-branching.md for complete patterns.

Target Factories Overview

A target factory is a function that returns pre-configured target objects:

#' @export
analyze_dataset <- function(name, file_path) {
  name <- targets::tar_deparse_language(substitute(name))
  name_data <- paste0(name, "_data")
  sym_data <- as.symbol(name_data)

  command <- substitute(analyze(data), env = list(data = sym_data))

  list(
    targets::tar_target_raw(name_data, substitute(load_csv(file_path))),
    targets::tar_target_raw(name, command)
  )
}

See topic-target-factories.md for metaprogramming patterns and validation.

Debugging and Troubleshooting

Validation Commands

# Check target definitions before running
targets::tar_manifest()
targets::tar_manifest(fields = c("name", "command", "pattern"))

# Visualize DAG (slow with many targets)
targets::tar_visnetwork(targets_only = TRUE)

# Test pattern logic without running pipeline
targets::tar_pattern(
  cross(method, map(dataset, seed)),
  method = 3,
  dataset = 5,
  seed = 10
)

Common Errors

Identifying Failed Branches

# Check which targets have errors
targets::tar_meta() |>
  dplyr::filter(error != "")

# Read specific branch by index
targets::tar_read(target_name, branches = 1)

# Inspect all branch metadata
targets::tar_branches(target_name)

Debugging Strategies

1. Start with tar_manifest() - verify target count and commands before running
2. Test with subset - use pattern = head(x, n = 3) for initial runs
3. Include provenance - add parameter values to branch outputs for traceability
4. Check upstream first - use tar_read() on dependencies before investigating branching

Common Mistakes

See Also

• r-metaprogramming: Expression manipulation for target factories
• tidy-evaluation: Programming with data-masked functions
• targetopia-packages.md: Package development workflows

Reference Files

• topic-static-branching.md - Full static branching guide
• topic-dynamic-branching.md - Full dynamic branching guide
• topic-hybrid-branching.md - Dynamic within static patterns
• topic-target-factories.md - Custom factory functions
• references/tarchetypes-functions.md - Function reference
• references/pattern-composition.md - Pattern algebra
• references/targets-utilities.md - Package author utilities
• templates/static-branching.R - Static branching code template
• templates/target-factory.R - Target factory code template
• targetopia-packages.md - Targetopia package development guide

External Resources

• targets documentation
• tarchetypes package
• targets manual: dynamic branching
• targets manual: static branching

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