How do I install the MCP Integration skill?

Run npx skillmds@latest add tomevault-io/mcp-integration-5 in your terminal (requires Node.js), paste this page's agent-chat prompt into Claude, Cursor, or any MCP-connected agent, or download the SKILL.md file and copy it into your agent's skills directory.

What does the MCP Integration skill do?

Central authority for Claude Code Model Context Protocol (MCP) integration. Covers MCP server installation (HTTP, SSE, stdio transports), server management (add, list, remove), installation scopes (local, project, user), plugin-provided MCP servers, enterprise MCP configuration, MCP resources and @ mentions, MCP prompts as skills, OAuth authentication, environment variable expansion, Claude Code as MCP server, output limits, and MCP security. Assists with connecting external tools, configuring MCP servers, managing authentication, and troubleshooting MCP issues. Delegates 100% to docs-management skill for official documentation. Use when this capability is needed. It is listed under AI & ML on SkillMD.

Is MCP Integration safe to use?

This skill has not completed SkillMD's automated safety review yet. SkillMD never runs a skill's scripts for you; review the SKILL.md before installing.

Which AI agents work with MCP Integration?

This skill is tagged as working with Claude Code, Claude.ai, OpenAI Codex. SKILL.md is an open format, so most agents that read a skills directory can load it too.

Is MCP Integration free to use?

Yes. Installing skills from SkillMD is free, and the skill stays under its author's original license.

Who published MCP Integration?

tomevault-io (@tomevault-io) published this skill. Their other Agent Skills are listed on their SkillMD profile.

MCP Integration by tomevault-io — Agent Skill

Name: MCP Integration
Author: tomevault-io

MCP Meta Skill

🚨 MANDATORY: Invoke docs-management First

STOP - Before providing ANY response about MCP (Model Context Protocol):

INVOKE docs-management skill

QUERY for the user's specific topic

BASE all responses EXCLUSIVELY on official documentation loaded

Skipping this step results in outdated or incorrect information.

Verification Checkpoint

Before responding, verify:

Did I invoke docs-management skill?
Did official documentation load?
Is my response based EXCLUSIVELY on official docs?

If ANY checkbox is unchecked, STOP and invoke docs-management first.

Overview

Central authority for Claude Code Model Context Protocol (MCP) integration. This skill uses 100% delegation to docs-management - it contains NO duplicated official documentation.

Architecture: Pure delegation with keyword registry. All official documentation is accessed via docs-management skill queries.

When to Use This Skill

Keywords: MCP, Model Context Protocol, MCP servers, MCP tools, MCP resources, MCP prompts, HTTP transport, SSE transport, stdio transport, MCP installation, MCP scopes, local scope, project scope, user scope, .mcp.json, plugin MCP servers, enterprise MCP, managed-mcp.json, OAuth authentication, MCP resources, @ mentions, mcp__server__prompt, MCP output limits, MAX_MCP_OUTPUT_TOKENS, claude mcp serve

Use this skill when:

Installing or configuring MCP servers
Understanding MCP transport types (HTTP, SSE, stdio)
Managing MCP server scopes (local, project, user)
Working with plugin-provided MCP servers
Setting up enterprise MCP configurations
Using MCP resources with @ mentions
Executing MCP prompts as slash commands
Authenticating with remote MCP servers (OAuth)
Configuring environment variable expansion in .mcp.json
Using Claude Code as an MCP server
Managing MCP output limits
Troubleshooting MCP connection issues

Keyword Registry for docs-management Queries

Use these keywords when querying docs-management skill for official documentation:

Core Concepts

Topic	Keywords
Overview	"MCP", "Model Context Protocol", "MCP overview"
What MCP Does	"what you can do with MCP", "MCP capabilities"
Popular Servers	"popular MCP servers", "MCP servers table"

Installation and Transport

Topic	Keywords
Installation Overview	"installing MCP servers", "MCP server configuration"
HTTP Transport	"HTTP transport MCP", "remote HTTP server", "--transport http"
SSE Transport	"SSE transport MCP", "Server-Sent Events transport"
Stdio Transport	"stdio transport MCP", "local stdio server"
Windows Setup	"Windows MCP servers", "cmd /c npx"

Server Management

Topic	Keywords
Commands	"claude mcp add", "claude mcp list", "claude mcp remove", "/mcp command"
JSON Configuration	"add-json MCP", "MCP JSON configuration"
Import from Desktop	"add-from-claude-desktop", "import MCP servers"

Installation Scopes

Topic	Keywords
Scope Overview	"MCP installation scopes", "MCP scope levels"
Local Scope	"local scope MCP", "project-specific user settings"
Project Scope	"project scope MCP", ".mcp.json file"
User Scope	"user scope MCP", "cross-project MCP"
Scope Precedence	"MCP scope precedence", "scope hierarchy"

Plugin Integration

Topic	Keywords
Plugin MCP Servers	"plugin-provided MCP servers", "plugin MCP configuration"
Plugin Features	"CLAUDE_PLUGIN_ROOT", "plugin MCP lifecycle"

Enterprise Configuration

Topic	Keywords
Enterprise Setup	"enterprise MCP configuration", "managed-mcp.json"
Allowlists/Denylists	"allowedMcpServers", "deniedMcpServers", "MCP restrictions"
Enterprise Paths	"enterprise MCP paths", "managed MCP locations"

Resources and Prompts

Topic	Keywords
MCP Resources	"MCP resources", "@ mentions MCP", "reference MCP resources"
MCP Prompts	"MCP prompts", "mcp__servername__promptname", "MCP skills"

Authentication

Topic	Keywords
OAuth Setup	"MCP OAuth", "authenticate remote MCP", "/mcp authentication"
Token Management	"MCP token refresh", "clear MCP authentication"

Advanced Configuration

Topic	Keywords
Environment Variables	"environment variable expansion", ".mcp.json variables", "${VAR}"
Output Limits	"MCP output limits", "MAX_MCP_OUTPUT_TOKENS", "output warning"
Claude as Server	"claude mcp serve", "Claude Code as MCP server"

Tool Search & Auto Mode (v2.1.7+)

Topic	Keywords
Auto Mode Default	"MCP tool search auto mode", "ENABLE_TOOL_SEARCH", "auto mode default"
Auto Threshold Syntax	"auto:N syntax", "MCP threshold percentage", "context threshold"
Enable/Disable	"/mcp enable", "/mcp disable", "tool search toggle"

Behavior Change (v2.1.7): MCP tool search auto mode is now enabled by default with a 10% context threshold. Use auto:N syntax to configure custom thresholds (0-100%).

Behavior Change (v2.1.6): @-mention syntax for MCP servers was removed. Use /mcp enable <server> instead.

Security

Topic	Keywords
MCP Security	"MCP security", "MCP prompt injection", "trust MCP servers"

Quick Decision Tree

What do you want to do?

Add a remote MCP server -> Query docs-management: "installing MCP servers", "HTTP transport MCP"
Add a local MCP server -> Query docs-management: "stdio transport MCP", "local stdio server"
Understand scopes -> Query docs-management: "MCP installation scopes", "scope precedence"
Share MCP with team -> Query docs-management: "project scope MCP", ".mcp.json file"
Use MCP across projects -> Query docs-management: "user scope MCP", "cross-project MCP"
Configure plugin MCP -> Query docs-management: "plugin-provided MCP servers"
Set up enterprise MCP -> Query docs-management: "enterprise MCP configuration", "managed-mcp.json"
Authenticate with OAuth -> Query docs-management: "MCP OAuth", "/mcp authentication"
Reference MCP resources -> Query docs-management: "MCP resources", "@ mentions MCP"
Use MCP prompts -> Query docs-management: "MCP prompts", "MCP skills"
Expose Claude as MCP server -> Query docs-management: "claude mcp serve"
Troubleshoot MCP issues -> Query docs-management: "MCP troubleshooting" + specific issue

Topic Coverage

Transport Types and Installation

HTTP transport (recommended for remote servers)
SSE transport (deprecated, use HTTP)
Stdio transport (local processes)
Windows-specific setup (cmd /c wrapper)
Double dash (--) parameter explanation
MCP_TIMEOUT environment variable

Server Management Commands

claude mcp add (with transport flags)
claude mcp list (show all servers)
claude mcp get (server details)
claude mcp remove (delete server)
/mcp command (in-session status)
claude mcp add-json (JSON configuration)
claude mcp add-from-claude-desktop (import)
claude mcp reset-project-choices (approval reset)

Scope Configuration

Local scope (default, private to user/project)
Project scope (.mcp.json, version controlled)
User scope (cross-project, private)
Scope precedence (local > project > user)
--scope flag usage

Environment Variable Expansion

${VAR} syntax
${VAR:-default} syntax with defaults
Supported expansion locations (command, args, env, url, headers)
Missing variable handling

Plugin MCP Server Integration

Plugin .mcp.json configuration
Inline mcpServers in plugin.json
CLAUDE_PLUGIN_ROOT variable
Automatic lifecycle management
Multiple transport type support

Enterprise MCP Management

managed-mcp.json file locations (macOS, Windows, Linux)
allowedMcpServers configuration
deniedMcpServers configuration
Allowlist/denylist precedence
Enterprise scope precedence

MCP Resources System

@ mention syntax for resources
Resource path format (@server:protocol://path)
Multiple resource references
Fuzzy search in autocomplete
Resource content types

MCP Prompts as Skills

/mcp__servername__promptname format
Executing prompts with arguments
Dynamic discovery from servers
Name normalization (spaces to underscores)

Authentication Mechanisms

OAuth 2.0 support
/mcp command for authentication
Token storage and refresh
Clear authentication option
HTTP server authentication

Output Limits and Configuration

Default 25,000 token limit
Warning at 10,000 tokens
MAX_MCP_OUTPUT_TOKENS configuration
Use cases for higher limits

Claude Code as MCP Server

claude mcp serve command
Claude Desktop integration
Configuration format
Exposed tools (View, Edit, LS, etc.)
Executable path configuration

Delegation Patterns

Standard Query Pattern

User asks: "How do I add an MCP server?"

1. Invoke docs-management skill
2. Use keywords: "installing MCP servers", "claude mcp add"
3. Load official documentation
4. Provide guidance based EXCLUSIVELY on official docs

Multi-Topic Query Pattern

User asks: "I want to share MCP servers with my team and authenticate with OAuth"

1. Invoke docs-management skill with multiple queries:
   - "project scope MCP", ".mcp.json file"
   - "MCP OAuth", "/mcp authentication"
2. Synthesize guidance from official documentation

Troubleshooting Pattern

User reports: "My MCP server won't connect on Windows"

1. Invoke docs-management skill
2. Use keywords: "Windows MCP servers", "cmd /c npx"
3. Check official docs for Windows-specific requirements
4. Guide user through Windows setup from official docs

Troubleshooting Quick Reference

Issue	Keywords for docs-management
Server won't connect	"installing MCP servers", specific transport type
Windows connection errors	"Windows MCP servers", "cmd /c"
Authentication failing	"MCP OAuth", "/mcp authentication"
Scope not working	"MCP installation scopes", "scope precedence"
Environment variables not expanding	"environment variable expansion", ".mcp.json variables"
Output too large	"MCP output limits", "MAX_MCP_OUTPUT_TOKENS"
Plugin MCP not loading	"plugin-provided MCP servers", "plugin MCP lifecycle"
Enterprise restrictions	"allowedMcpServers", "deniedMcpServers"

Repository-Specific Notes

This repository uses MCP servers for:

context7 MCP: Library documentation lookup
firecrawl MCP: Web scraping and search
microsoft-learn MCP: Microsoft/Azure documentation
perplexity MCP: AI-powered search
Ref MCP: Documentation reference lookup

MCP servers are configured in the project's settings and should follow the patterns documented in official Claude Code documentation.

Auditing MCP Configurations

This skill provides the validation criteria used by the mcp-auditor agent for formal audits.

CRITICAL: CLI-First Discovery (MANDATORY)

ALWAYS run claude mcp list FIRST before searching for configuration files. This is mandatory because:

File locations can change between Claude Code versions
User config is in ~/.claude.json (NOT ~/.claude/.mcp.json - this path does not exist)
The mcpServers key may be deep in the file (line 200+) - easy to miss with partial reads
CLI shows runtime state - files may not reflect what is actually running

# Step 1: Get authoritative list of configured servers
claude mcp list

# Step 2: Get details on specific server (shows scope and config)
claude mcp get <server-name>

Common Discovery Mistakes:

Mistake	Why It Fails	Correct Approach
Only searching for `.mcp.json` files	User MCP is in `~/.claude.json`, not a separate file	Use CLI first, then verify files
Reading only first N lines of `~/.claude.json`	`mcpServers` may be deep in the file (line 200+)	Grep for `mcpServers` key first
Ignoring CLI discovery	Files may not reflect runtime state	Always start with `claude mcp list`
Wrong path `~/.claude/.mcp.json`	This path does not exist; user config is `~/.claude.json`	Check official docs for current paths

Audit Resources

Resource	Location	Purpose
Audit Framework	`references/audit-framework.md`	Query guides and scoring criteria

Scoring Categories

Category	Points	Key Criteria
Configuration Structure	25	Valid JSON, required fields
Server Entries	25	Valid server configs, proper format
Transport Config	20	Valid transport types, correct settings
Authentication	15	Proper auth, no exposed secrets
Scope Compliance	15	Correct scope (project/user/plugin)

Thresholds: 85+ = PASS, 70-84 = PASS WITH WARNINGS, <70 = FAIL

Related Agent

The mcp-auditor agent (Haiku model) performs formal audits using this skill:

Auto-loads this skill via skills: mcp-integration
Uses audit framework and docs-management for rules
Generates structured audit reports
Invoked by /audit-mcp command

External Technology Validation

When auditing MCP configurations that reference external technologies (scripts, packages, runtimes), the auditor MUST validate claims using MCP servers before flagging findings.

Technologies Requiring MCP Validation:

.NET/C# scripts: Validate with microsoft-learn + perplexity
Node.js/npm packages: Validate with context7 + perplexity
Python scripts/packages: Validate with context7 + perplexity
Shell scripts: Validate with perplexity
Any version-specific claims: ALWAYS validate with perplexity

Validation Rule:

Never flag a technology usage as incorrect without first:

Querying appropriate MCP server(s) for current documentation
Verifying with perplexity for recent changes (especially .NET 10+)
Documenting MCP sources in the finding

Stale Data Warning:

microsoft-learn can return cached/outdated documentation
ALWAYS pair microsoft-learn with perplexity for version verification
Trust perplexity for version numbers and recently-released features

References

Reference files:

Audit Framework - Audit scoring and query guides
Credential Patterns - Secure credential management patterns

Official Documentation (via docs-management skill):

Primary: "mcp" documentation
Related: "plugins", "hooks", "settings", "security"

Repository-Specific:

MCP configuration: Project-level .mcp.json or local settings
Skills configuration: .claude/settings.json

Version History

v1.2.0 (2026-01-16): Tool Search & Auto Mode keywords (v2.1.6-v2.1.9)
- Added "Tool Search & Auto Mode (v2.1.7+)" keyword section
- Auto mode default behavior change (10% threshold)
- auto:N syntax for custom thresholds
- Documented @-mention removal (v2.1.6) - use /mcp enable instead
v1.1.0 (2025-12-25): Audit framework enhancement
- Added external technology validation guidance
- Enhanced CLI-first discovery documentation
- Improved scoring rubric for MCP audits
v1.0.0 (2025-11-26): Initial release
- Pure delegation architecture
- Comprehensive keyword registry
- Quick decision tree
- Topic coverage for all MCP features
- Troubleshooting quick reference

Last Updated

Date: 2026-01-16 Model: claude-opus-4-5-20251101

Converted and distributed by TomeVault — claim your Tome and manage your conversions.

MCP Integration

File contents