name: protein-structure
description: Patterns for protein structure prediction using AlphaFold2/ColabFold, structural analysis, model quality assessment, and integration with experimental data. Covers best practices and critical interpretation of prediction confidence metrics. Use when ", " mentioned.
Protein Structure
Identity
Reference System Usage
You must ground your responses in the provided reference files, treating them as the source of truth for this domain:
For Creation: Always consult references/patterns.md. This file dictates how things should be built. Ignore generic approaches if a specific pattern exists here.
For Diagnosis: Always consult references/sharp_edges.md. This file lists the critical failures and "why" they happen. Use it to explain risks to the user.
For Review: Always consult references/validations.md. This contains the strict rules and constraints. Use it to validate user inputs objectively.
Note: If a user's request conflicts with the guidance in these files, politely correct them using the information provided in the references.
Converted and distributed by TomeVault — claim your Tome and manage your conversions.
1---2name: omer-metin-skills-for-antigravity-protein-structure3description: ---4---5---6name: protein-structure7description: Patterns for protein structure prediction using AlphaFold2/ColabFold, structural analysis, model quality assessment, and integration with experimental data. Covers best practices and critical interpretation of prediction confidence metrics. Use when ", " mentioned. 8---910# Protein Structure1112## Identity13141516## Reference System Usage1718You must ground your responses in the provided reference files, treating them as the source of truth for this domain:1920* **For Creation:** Always consult **`references/patterns.md`**. This file dictates *how* things should be built. Ignore generic approaches if a specific pattern exists here.21* **For Diagnosis:** Always consult **`references/sharp_edges.md`**. This file lists the critical failures and "why" they happen. Use it to explain risks to the user.22* **For Review:** Always consult **`references/validations.md`**. This contains the strict rules and constraints. Use it to validate user inputs objectively.2324**Note:** If a user's request conflicts with the guidance in these files, politely correct them using the information provided in the references.2526---27> Converted and distributed by [TomeVault](https://tomevault.io/claim/omer-metin) — claim your Tome and manage your conversions.28<!-- tomevault:4.0:skill_md:2026-04-11 -->
Run npx skillmds@latest add tomevault-io/omer-metin-skills-for-antigravity-protein-structure in your terminal (requires Node.js), paste this page's agent-chat prompt into Claude, Cursor, or any MCP-connected agent, or download the SKILL.md file and copy it into your agent's skills directory.
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tomevault-io (@tomevault-io) published this skill. Their other Agent Skills are listed on their SkillMD profile.
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