tools-only For Researchers & Scientists
Build AI agents that automate literature review, data analysis, and hypothesis generation — saving weeks of manual research work.
Your Pain Points
- ❌ Literature reviews take weeks of manual reading and synthesis
- ❌ Data analysis pipelines are fragile and time-consuming
- ❌ Hypothesis generation relies on manual cross-referencing
- ❌ Keeping up with new publications is overwhelming
- ❌ Reproducibility requires extensive documentation
What You Can Build
🎯 Quick Win: Literature Review Agent (15 minutes)
ROI: 10x faster literature synthesis
Skills: 2 skills
pubmed_search → paper_summarizer
What it does:
- Automatically searches PubMed for relevant papers
- Generates structured summaries of findings
- Identifies key citations and methodologies
- Exports organized bibliography
Time saved: 2-3 weeks → 2-3 hours per literature review
🚀 High-Impact: Research Pipeline Agent (1 hour)
ROI: Complete research workflow automation
Skills: 5 skills
pubmed_search → paper_summarizer → hypothesis_generator →
experimental_design → data_analyzer
What it does:
- Automated literature discovery and synthesis
- AI-powered hypothesis generation from existing research
- Experimental design recommendations
- Statistical analysis and visualization
- Reproducible research pipeline
Impact:
- Accelerate discovery phase by 5-10x
- Generate novel hypotheses from literature
- Reproducible analysis pipelines
💼 Enterprise: Drug Discovery Agent (Half day)
ROI: Months of analysis in days
Skills: 8 skills
uniprot_search → protein_structure_analyzer → drug_target_identifier →
compound_similarity_search → molecular_docking → toxicity_predictor →
clinical_trial_analyzer → regulatory_pathway_mapper
What it does:
- Target identification from protein databases
- Structure-based drug design
- Compound screening and optimization
- Toxicity and safety prediction
- Clinical trial analysis and regulatory planning
Impact:
- Compress early discovery from months to days
- Data-driven target selection
- Automated compound optimization
Top 10 Skills for Researchers
Literature & Discovery
- pubmed_search — Automated PubMed queries with filters
- paper_summarizer — Extract key findings and methods
- citation_mapper — Build citation networks
Data Analysis
- statistical_analyzer — Automated statistical tests
- data_visualizer — Generate publication-ready plots
- reproducibility_checker — Validate analysis pipelines
Bioinformatics
- uniprot_search — Protein database queries
- sequence_alignment — Multiple sequence alignment
- protein_structure_analyzer — AlphaFold integration
Drug Discovery
- drug_target_identifier — Identify therapeutic targets
Browse all 141 scientific skills →
Real Results
Case Study: Academic Research Lab
Lab: Cancer biology lab, 5 researchers Challenge: Manually reviewing 50+ papers/week, slow hypothesis generation
Solution: Deployed literature review → hypothesis generation chain
Results:
- ⚡ Literature review time: 3 weeks → 6 hours
- 📈 Papers synthesized: 50/week → 200/week
- 💡 Novel hypotheses: 2x increase in generated ideas
- 🎯 Grant success: Faster background research for proposals
- 📊 Publication rate: 3 papers/year → 5 papers/year
Time saved: 20 hours/week per researcher
Common Skill Chains for Research
Literature Review & Synthesis
pubmed_search → paper_summarizer → citation_mapper → hypothesis_generator
Use when: Starting new research direction, writing grants
Protein Analysis Pipeline
uniprot_search → sequence_alignment → protein_structure_analyzer →
binding_site_predictor
Use when: Analyzing protein targets, structure-function studies
Drug Discovery Workflow
drug_target_identifier → compound_similarity_search → molecular_docking →
toxicity_predictor
Use when: Target-based drug discovery, lead optimization
Data Analysis & Visualization
data_cleaner → statistical_analyzer → data_visualizer → reproducibility_checker
Use when: Analyzing experimental data, preparing publications
Clinical Research
clinical_trial_analyzer → patient_cohort_matcher → outcome_predictor →
regulatory_pathway_mapper
Use when: Clinical study design, translational research
Getting Started
Step 1: Install Research Skills
npm install @skene/skills-directory
npx skills-directory install --target all
Step 2: Choose Your Quick Win
Pick the quick win that matches your time investment:
- 15 minutes: Literature Review Agent
- 1 hour: Research Pipeline Agent
- Half day: Drug Discovery Agent
Step 3: Deploy & Iterate
- Connect to research databases (PubMed, UniProt, etc.)
- Run on sample dataset or query
- Validate results against manual review
- Integrate into research workflow
ROI Calculator
Your Lab:
- Researchers: _
- Hours/week on literature review: _
- Hours/week on data analysis: _
- Average hourly cost: $_
With Research Agents:
- Literature review time: 80% reduction
- Data analysis time: 60% reduction
- Time saved/week: _ hours
- Cost savings/month: _ hours × 4 weeks × $_____ = $_**/month**
- Annual savings: $_/year
Typical Results:
- Small lab (3-5 researchers): $10K-$20K/year saved
- Medium lab (10-15 researchers): $40K-$80K/year saved
- Large lab (20+ researchers): $100K+/year saved
Research Tool Integrations
Our scientific skills integrate with leading research platforms:
✅ PubMed/NCBI — Literature search and retrieval ✅ UniProt — Protein sequence and function databases ✅ AlphaFold — Protein structure prediction ✅ ChEMBL — Bioactive molecule database ✅ ClinicalTrials.gov — Clinical trial data ✅ PDB — Protein Data Bank queries ✅ BLAST — Sequence similarity search ✅ STRING — Protein-protein interaction networks
Each skill uses official APIs and follows best practices for reproducibility.
Supported Research Domains
Biomedical Research
- Drug discovery and development
- Target identification and validation
- Biomarker discovery
Molecular Biology
- Sequence analysis
- Protein structure and function
- Gene expression analysis
Clinical Research
- Clinical trial design
- Patient cohort analysis
- Outcome prediction
Computational Biology
- Systems biology modeling
- Network analysis
- Multi-omics integration
Chemistry
- Compound screening
- Structure-activity relationships
- Toxicity prediction
Next Steps
- Quick Win: Start with literature review agent (15 min)
- Explore: Browse all research skill chains
- Community: Share your research workflows
- Scale: Build custom research pipelines
Additional Resources
- Complete Skills Directory — Browse all 141 scientific skills
- Skill Chain Cookbook — 36+ ready-to-use recipes (includes Recipe 33: Scientific Research Synthesis)
- Playbooks — Niche playbooks and exact data to wire
- Value & ROI Guide — Detailed ROI calculations
- Security Best Practices — Data security for research
Ready to 10x your research velocity? Install now and deploy your first agent in 15 minutes.
npm install @skene/skills-directory