Nextflow Pipelines Docker Issues

Sub-skill of nextflow-pipelines: Docker issues (+2).

vamseeachanta a470202 824 B Updated

File contents

Docker issues (+2)

Docker issues

Problem Fix
Not installed Install from https://docs.docker.com/get-docker/
Permission denied sudo usermod -aG docker $USER then re-login
Daemon not running sudo systemctl start docker

Nextflow issues

Problem Fix
Not installed curl -s https://get.nextflow.io | bash && mv nextflow ~/bin/
Version < 23.04 nextflow self-update

Java issues

Problem Fix
Not installed / < 11 sudo apt install openjdk-11-jdk

Do not proceed until all checks pass. For HPC/Singularity, see references/troubleshooting.md.


vamseeachanta/workspace-hub/tree/main/.agents/skills/_archive/science/bio-research/nextflow-pipelines/docker-issues commit a470202523

Frequently asked questions

npx skillmds@latest add vamseeachanta/nextflow-pipelines-docker-issues