Nextflow Pipelines Workflow Checklist

Sub-skill of nextflow-pipelines: Workflow Checklist.

vamseeachanta Updated

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Workflow Checklist

Workflow Checklist

- [ ] Step 0: Acquire data (if from GEO/SRA)
- [ ] Step 1: Environment check (MUST pass)
- [ ] Step 2: Select pipeline (confirm with user)
- [ ] Step 3: Run test profile (MUST pass)
- [ ] Step 4: Create samplesheet
- [ ] Step 5: Configure & run (confirm genome with user)
- [ ] Step 6: Verify outputs

vamseeachanta/workspace-hub/tree/main/.agents/skills/_archive/science/bio-research/nextflow-pipelines/workflow-checklist commit 464604a5a1

Frequently asked questions

npx skillmds@latest add vamseeachanta/nextflow-pipelines-workflow-checklist