Allowed at Repo Root (+2)
Allowed at Repo Root
src/ tests/ docs/ config/
scripts/ data/ specs/ reports/
pyproject.toml pytest.ini README.md CHANGELOG.md
CLAUDE.md AGENTS.md Makefile LICENSE
.gitignore .claude/ .codex/ .gemini/
.github/ .pre-commit-config.yaml
NOT Allowed at Repo Root
| Item | Correct Location |
|---|---|
Loose .py scripts |
scripts/ or src/<pkg>/tools/ |
agents/ directory |
.claude/agents/ only |
.agent-os/ |
DELETE — superseded by .claude/skills/ |
.hive-mind/, .swarm/ |
DELETE — gitignored |
business/ docs |
docs/business/ |
modules/ |
Move into src/<package>/modules/ |
bin/ (empty) |
DELETE |
_coding_agents/ |
DELETE |
examples/ |
docs/examples/ or leave at root only if README documents it |
setup.py (when pyproject.toml exists) |
DELETE — pyproject.toml supersedes it |
archive/, backups/ |
_archive/ (single, underscore-prefixed) |
*.xlsx, *.csv output files |
results/<domain>/ and gitignored |
test_export*.json |
tests/<domain>/fixtures/ or gitignored |
COVERAGE_ANALYSIS.txt |
gitignored (session artifact) |
verdict.txt, test_output_ss |
gitignored (session artifacts) |
coverage.wrk*.xml |
gitignored (session artifacts) |
Windows path dirs (D:\...) |
DELETE — filesystem artifact, never track |
Root-Level src/ Must Contain Only the Package
src/ ← OK
package_name/ ← OK (the installed package)
modules/ ← WRONG — orphaned, not installed
validators/ ← WRONG — orphaned, not installed
other_stuff/ ← WRONG