Org Branch Cleanup

Org Branch Cleanup

Purpose

Remove organization branch clutter without guessing which refs are safe to delete.

The bundled scripts/org_branch_cleanup.py separates the work into read-only audit, explicit apply, and full verification phases. Dry-run evidence is the default; deletion requires an exact organization confirmation.

When to use

• A GitHub organization has accumulated old or merged development branches.
• Bot, agent, migration, or dependency branches remain after pull requests merge.
• A maintainer wants an evidence-backed cleanup ledger rather than broad git push --delete.
• Branch-heavy security, state, archive, or generated-data repositories need to be separated from ordinary development repos.
• A previous cleanup stopped midway and must resume without repeating completed deletions.

Workflow

1. Read the target repository or organization instructions before mutation.
2. Confirm GitHub authentication and rate-limit headroom:
   • gh auth status
   • gh api rate_limit --jq '.resources | {core,graphql}'
3. Run a read-only audit:

   python3 scripts/org_branch_cleanup.py audit \
     --org example-org \
     --output /tmp/example-org-branch-audit
   

   Start with --include-repo-regex '^one-repo$' when proving access or policy. Audit output is immutable by default; use a new directory rather than --overwrite.
4. Inspect audit-summary.json, audit-errors.tsv, and delete-candidates.jsonl.
   • Do not apply a partial audit. Fix failed repository queries or explicitly justify --allow-partial.
   • Default candidates are same-repository PR heads merged at least 14 days ago.
   • Closed-unmerged branches and unassociated stale branches are report-only.
   • Default, fork, archived, protected, and release-like refs are excluded.
   • Repositories matching GHSA, state, or archive patterns are excluded by default. Audit them separately under an explicit retention policy.
5. Apply only after the candidate set is reviewed:

   python3 scripts/org_branch_cleanup.py apply \
     --candidates /tmp/example-org-branch-audit/delete-candidates.jsonl \
     --confirm-org example-org \
     --output /tmp/example-org-branch-apply
   

   apply requires the clean sibling audit-summary.json. Do not bypass this with --allow-unverified-candidates or --allow-partial-audit without an explicit operator decision.
6. Treat each preflight skip as a safety result, not a failure.
   • moved: branch SHA changed after the snapshot.
   • protected: REST or ruleset protection blocked deletion.
   • open-pr: a live pull request now uses the branch.
   • missing: GitHub or another operator already removed it.
7. Verify every deletion:

   python3 scripts/org_branch_cleanup.py verify \
     --ledger /tmp/example-org-branch-apply/deleted.tsv \
     --output /tmp/example-org-branch-apply/verification-rerun.tsv
   

8. Report exact deleted, skipped, retained, excluded-repository, and verification counts. Preserve the ledger until the cleanup is accepted.

Safety rules

• Never delete default, protected, release, pages, stable, or active-PR branches.
• Never infer safety from branch age or naming alone.
• Require a same-repository PR whose head name matches the current branch tip.
• Re-read the live SHA, protection status, and open PRs immediately before deletion.
• Refuse organization mismatch between the candidate ledger and --confirm-org.
• Keep closed-unmerged deletion disabled unless the operator explicitly passes --allow-closed-unmerged.
• Stop broad scans when generated or security repos contain thousands of refs; define retention policy first.
• If a proxy or wrapper stalls, preserve ledgers and resume with the real GitHub CLI. Do not restart shared daemons owned by other sessions.

Inputs

• GitHub organization login.
• Authenticated gh CLI with repository administration permission.
• Output directory for snapshots and ledgers.
• Optional retention windows and repository or branch exclusion regexes.
• Optional --gh-bin override for a compatible GitHub CLI wrapper.

Outputs

• snapshot.jsonl: immutable branch and PR-tip evidence.
• delete-candidates.jsonl: old merged branches eligible for live preflight.
• closed-unmerged-review.jsonl: abandoned PR heads requiring explicit approval.
• stale-unassociated.tsv: old branches with insufficient deletion proof.
• deleted.tsv and skipped.tsv: resumable mutation ledger.
• verification.tsv: post-delete ref state.
• JSON audit and apply summaries with exact counts and timestamps.