withoneai Seqera through One
Seqera is a workflow orchestration and data operations platform for scientific computing that provides tools for running, monitoring, and scaling bioinformatics and other data-intensive pipelines, allowing research and engineering teams to manage reproducible workflows across cloud, on-premises, and hybrid infrastructure.
One exposes Seqera through four MCP tools. The table below carries real action ids from One's knowledge base, so for a common operation you can skip search and go straight to reading the action's parameters.
How to run an action
- Find the action in the table below, or call
search_one_platform_actionswith platformseqeraif it is not listed. - Call
get_one_action_knowledgewith the action id. Do this every time, including for actions in this table. The table gives you the id, not the parameters. - Call
execute_one_actionwith parameters copied from that knowledge.
Never guess a parameter name, a body field, or an enum value. The knowledge has the real schema, and a guessed field is either a 400 or a silent write of the wrong thing.
Before you start
Call list_one_integrations once and confirm Seqera is connected. If it is missing, the user has not connected it: say so and point them at https://app.withone.ai rather than reaching for raw HTTP.
Each connection carries an access field. If it reports {"policy": "methods", "methods": ["GET"]} the agent is read-only here, so plan a read-only answer instead of attempting a write that will be refused.
Before a write
Creates, updates, deletes and sends land on a real Seqera account and cannot be recalled. State the action and the specific target in one line before the first write in a task, and let the user stop you. Reads need no confirmation.
Actions
Datasets
| Action | Method | Path | Action id |
|---|---|---|---|
| Describe a Dataset's Metadata | GET | /datasets/{{datasetId}}/metadata |
conn_mod_def::GK0x7vxrwoA::QOqSZxXBQNiubFIEpBiVlA |
| Describe a Workspace Dataset's Metadata | GET | /workspaces/{{workspaceId}}/datasets/{{datasetId}}/metadata |
conn_mod_def::GK0x7wNNzIg::0N9qYajtTUCPla8zfIUvbw |
| Download Dataset Content for a Dataset Version | GET | /datasets/{{datasetId}}/v/{{version}}/n/{{fileName}} |
conn_mod_def::GK0x7wrEPsA::XdutrdULTu6Yl3NwZxNn3Q |
| List a Workspace's Available Datasets | GET | /workspaces/{{workspaceId}}/datasets |
conn_mod_def::GK0x74clN9A::L5iqh1onS42sJdMkeaF6Og |
| List Datasets | GET | /datasets |
conn_mod_def::GK0x8DCJUsA::oAzS_kxpS2i78Yfw1Ey-ZQ |
| Preview a Dataset Version's Linked Content | GET | /datasets/{{datasetId}}/v/{{version}}/preview |
conn_mod_def::GK0x8Cs8rfg::6PitymkKTO6Weg3av5AKvQ |
| Add Labels to Datasets | POST | /datasets/labels/add |
conn_mod_def::GK0x8-qoSEg::OdhDojZUR-yNXqv6chlvug |
| Create a Workspace Dataset | POST | /workspaces/{{workspaceId}}/datasets |
conn_mod_def::GK0x7nVscug::CGhi7WlQTle8TwRxsuEMPg |
| Create Dataset | POST | /datasets |
conn_mod_def::GK0x7nVjP3A::i2u2CDkmSoi_yEMzBkPveA |
| Delete a Workspace's Dataset | DELETE | /workspaces/{{workspaceId}}/datasets/{{datasetId}} |
conn_mod_def::GK0x7l-lHcA::rYIu9tXqS4-yqd4BYCNlwQ |
| Delete Dataset | DELETE | /datasets/{{datasetId}} |
conn_mod_def::GK0x7lyzKgg::GFDvbgmMTfehaMi-LYz3yA |
| Delete Datasets | DELETE | /datasets |
conn_mod_def::GK0x7nsqKQA::FnK2BFDGS12BzNi87dQ36w |
11 more Datasets actions are available through search.
DataLinks
| Action | Method | Path | Action id |
|---|---|---|---|
| Describe a Data-Link | GET | /data-links/{{dataLinkId}} |
conn_mod_def::GK0x7IUXkPg::xBBHTdQsToef5TY1KSfguw |
| Download a Data-Link File at Path | GET | /data-links/{{dataLinkId}}/download/{{filePath}} |
conn_mod_def::GK0x7GnrIVA::gTPsuwq4RhmSmB1XJasAxQ |
| Explore a Data-link Path | GET | /data-links/{{dataLinkId}}/browse/{{path}} |
conn_mod_def::GK0x7S3tTpg::qSfaGlJsTQuMN-U0mZ0fTw |
| Explore a Data-Link Tree | GET | /data-links/{{dataLinkId}}/browse-tree |
conn_mod_def::GK0x7HDHIHg::qW8BHN4HT92OOslSxslTng |
| Explore a Data-Link's Contents | GET | /data-links/{{dataLinkId}}/browse |
conn_mod_def::GK0x7IM79xA::gtbWIYJ6QQqlNsv0lLzjfA |
| Generate a Data-Link File Download URL | GET | /data-links/{{dataLinkId}}/generate-download-url |
conn_mod_def::GK0x7T4xGEg::oIJojuIXQZSMzXsAFaMjIg |
| Generate Download Script for a Data-Link | GET | /data-links/{{dataLinkId}}/script/download |
conn_mod_def::GK0x7eMbERA::CkWzT7mBTZGs9MMA643VpA |
| List Data-Links | GET | /data-links |
conn_mod_def::GK0x7ctbnTg::LdxA7GJqRgOOZ1ehCNAJrQ |
| List Mounted Data-Links | GET | /studios/data-links |
conn_mod_def::GK0x_bepeTA::7QjvTOxhTBaiiGY66n3icA |
| Create Data-Link | POST | /data-links |
conn_mod_def::GK0x68OLFtA::CuISd6qaRnetTMfMR7JIdA |
| Delete a Data-Link | DELETE | /data-links/{{dataLinkId}} |
conn_mod_def::GK0x68N6Omg::lzyu7kY1T1SiPJmVJrw4ZA |
| Finish a Data-Link File Upload | POST | /data-links/{{dataLinkId}}/upload/finish |
conn_mod_def::GK0x7Sy9qDg::8_F3whudScaAdimQ6q0u9g |
4 more DataLinks actions are available through search.
Pipelines
| Action | Method | Path | Action id |
|---|---|---|---|
| Describe a Pipeline | GET | /pipelines/{{pipelineId}} |
conn_mod_def::GK0x-a4-zRg::teFaZjg9S-iyHMlHH7YbAQ |
| Describe a Pipeline Launch | GET | /pipelines/{{pipelineId}}/launch |
conn_mod_def::GK0x-bLy22A::modrMErYQ4en9lIr10H2ZA |
| Describe a Remote Pipeline Repository | GET | /pipelines/info |
conn_mod_def::GK0x-dJSlHg::whDoyX27RX63m1xGk_DEFA |
| List Pipeline Repositories | GET | /pipelines/repositories |
conn_mod_def::GK0x-lRCRGA::Gk67pZMvQ9a5y6Q2eVOFcQ |
| List Pipelines | GET | /pipelines |
conn_mod_def::GK0x-ofnPrA::tiG8GeRISLS5fGUgGHBfBQ |
| Validate Pipeline Name | GET | /pipelines/validate |
conn_mod_def::GK0x-l9ElKg::HPacakiFQG67hFgXryj-2Q |
| Add Labels to Pipelines | POST | /pipelines/labels/add |
conn_mod_def::GK0x86dm68A::Uu7XcPu2QuSGhsc0RYs6og |
| Create Pipeline | POST | /pipelines |
conn_mod_def::GK0x-RNeSZA::js3F-qylSl6CdZG_sgDxwg |
| Delete Pipeline | DELETE | /pipelines/{{pipelineId}} |
conn_mod_def::GK0x-az-Zag::5gxT62UrQq2sVnW6rSsGwg |
| Remove Labels From Pipelines | POST | /pipelines/labels/remove |
conn_mod_def::GK0x9RYivZA::5n8TBVuPRUmASZM-GSfYyw |
| Replace Pipeline Labels | POST | /pipelines/labels/apply |
conn_mod_def::GK0x9ZnHvpg::rV9g7eBRRSeTVXVHVGK97A |
| Update a Pipeline | PUT | /pipelines/{{pipelineId}} |
conn_mod_def::GK0x-l9P05A::LIqT4X8pRZqpVYXLmh8n_g |
1 more Pipelines actions are available through search.
Actions
| Action | Method | Path | Action id |
|---|---|---|---|
| Describe an Action | GET | /actions/{{actionId}} |
conn_mod_def::GK0x6J4d9Ng::Iu-OJPM_Qz-wUe6gNdrbvw |
| List Actions | GET | /actions |
conn_mod_def::GK0x6It-i9A::Qnv0xm16QXu_Cv2gUWuUfQ |
| Validate Action Name | GET | /actions/validate |
conn_mod_def::GK0x6TyQeMA::17HT4yNCQ3qIXsjJpsuiGA |
| Add Labels to Actions | POST | /actions/labels/add |
conn_mod_def::GK0x86xReyg::UXtucsBTTniiVnrcZj4W_g |
| Apply Labels to Actions | POST | /actions/labels/apply |
conn_mod_def::GK0x9QX-46g::NgR_33EYQjaJORMnmn1NYw |
| Create Action | POST | /actions |
conn_mod_def::GK0x6KMgxzA::HoqXdCLwRaOrIJtFrdO39g |
| Delete an Action | DELETE | /actions/{{actionId}} |
conn_mod_def::GK0x6LaHJdA::qfrCwRAlSfC2k2ArzRLADQ |
| Pause or Resume an Action | POST | /actions/{{actionId}}/pause |
conn_mod_def::GK0x6Tymw8g::g4mZXd4_SlOZYAnkCkOUyA |
| Remove Labels From Actions | POST | /actions/labels/remove |
conn_mod_def::GK0x9HfPK4g::ODXXv3M1StyTvpELWabB2Q |
| Update an Action | PUT | /actions/{{actionId}} |
conn_mod_def::GK0x6T89WOA::hczhIgqSTnyrK1pJXU5__A |
Studios
| Action | Method | Path | Action id |
|---|---|---|---|
| Describe a Studio Session | GET | /studios/{{sessionId}} |
conn_mod_def::GK0x_Rku8oA::ezPUwzQoTke5tkmCn9dn8w |
| List Studios | GET | /studios |
conn_mod_def::GK0x_aPeFzA::HE_QapxQS1y5z9lnwyh2dQ |
| Validate a Studio Name | GET | /studios/validate |
conn_mod_def::GK0x_pqH7yA::JkW3iV6lQm6rBvvgq-znTw |
| Create Studio | POST | /studios |
conn_mod_def::GK0x_RkzR-A::GqLx6o83SVeHbQiWSCfhRw |
| Delete a Studio by Session ID | DELETE | /studios/{{sessionId}} |
conn_mod_def::GK0x_QA6dWA::P2OeJq-OTXqvn-LqefyOVg |
| Extend a Studio Session's Lifespan | POST | /studios/{{sessionId}}/lifespan |
conn_mod_def::GK0x_Rk2Ocg::od7A0xTGR9-qOtL7ZnIMXA |
| Start a Studio Session | PUT | /studios/{{sessionId}}/start |
conn_mod_def::GK0x_pjqa8A::DTlQpgQiQSaI8c1uUooNQg |
| Stop a Studio Session | PUT | /studios/{{sessionId}}/stop |
conn_mod_def::GK0x_qVROcA::1q91YERxR12cFZYLAdcCGA |
| Update a Studio | PUT | /studios/{{sessionId}} |
conn_mod_def::GK0x_pjoEjA::pmPiER6RRxGhcAkJL-2TMQ |
Credentials
| Action | Method | Path | Action id |
|---|---|---|---|
| Describe Credentials | GET | /credentials/{{credentialsId}} |
conn_mod_def::GK0x6zeUSzg::b2yto7raT0eQVSjWhNkjyg |
| Get Encrypted Credentials | GET | /credentials/{{credentialsId}}/keys |
conn_mod_def::GK0x60LnX0g::hLQD8kXXQ9W3XdzbRprd7A |
| List Credentials | GET | /credentials |
conn_mod_def::GK0x67zgDtA::3N7g4tfzRz6SfhNaLBB8KA |
| Validate Credential Name | GET | /credentials/validate |
conn_mod_def::GK0x69voLiA::lFcZp9rWSQWGhfgmV2qcNg |
| Create Credentials | POST | /credentials |
conn_mod_def::GK0x60M8UWA::n9y4_iVFQNGqNcEtl5GR4w |
| Delete Credentials | DELETE | /credentials/{{credentialsId}} |
conn_mod_def::GK0x60RS2hA::u9dh8jzWTIyp0XyRAF3xwg |
| Update Credentials | PUT | /credentials/{{credentialsId}} |
conn_mod_def::GK0x68dcHAA::2YmIQ9YMSMqmY5mt-XWZ3A |
Organizations
| Action | Method | Path | Action id |
|---|---|---|---|
| Describe an Organization | GET | /orgs/{{orgId}} |
conn_mod_def::GK0x9jng-Vg::8owiYstXRgmcAAtp6q9cmw |
| List Organizations | GET | /orgs |
conn_mod_def::GK0x9uL7dKA::33nG5kwjSmGV5-FjZ3hGUA |
| Validate Organization Name | GET | /orgs/validate |
conn_mod_def::GK0x94U8hOg::19kA8abASiOVv8CFPXytpg |
| Create Organization | POST | /orgs |
conn_mod_def::GK0x9i6d5vA::nKRn4UhyRtC1zCz7gSOhvg |
| Delete Organization | DELETE | /orgs/{{orgId}} |
conn_mod_def::GK0x9h0bMLg::APqYRZk_RH-p6nsWs-A73g |
| Leave an Organization | DELETE | /orgs/{{orgId}}/members/leave |
conn_mod_def::GK0x9uHW6gA::fiyRWbcVSy2aekYin0pDrA |
| Update an Organization | PUT | /orgs/{{orgId}} |
conn_mod_def::GK0x937dHEg::rBc38OzpR7WxQtfsS2XWDg |
Workspaces
| Action | Method | Path | Action id |
|---|---|---|---|
| Describe a Workspace | GET | /orgs/{{orgId}}/workspaces/{{workspaceId}} |
conn_mod_def::GK0yBOkjVdg::3PSDAZweQEu70inor7UW8A |
| List a Team's Workspaces | GET | /orgs/{{orgId}}/teams/{{teamId}}/workspaces |
conn_mod_def::GK0yAAccDpA::JbjvCyZPTw6Mi33heppUwA |
| List an Organization's Workspaces | GET | /orgs/{{orgId}}/workspaces |
conn_mod_def::GK0yBYM4ioA::5EwAXGAHSEeColCP8La5Rg |
| Validate a Workspace Name | GET | /orgs/{{orgId}}/workspaces/validate |
conn_mod_def::GK0yBipqshA::2fKLS0FrSLWPeRrXok-KiA |
| Create an Organization Workspace | POST | /orgs/{{orgId}}/workspaces |
conn_mod_def::GK0yBHaYCDg::Xqfk0wqCSb-ifoIgIsrkhQ |
| Delete a Workspace in an Organization | DELETE | /orgs/{{orgId}}/workspaces/{{workspaceId}} |
conn_mod_def::GK0yBQf6zCA::20BC4geKQGS5xFxwg1KLAg |
| Update a Workspace | PUT | /orgs/{{orgId}}/workspaces/{{workspaceId}} |
conn_mod_def::GK0yBhVNc-A::QqBYBVf0Q7-PfDoIdGOpcA |
Workflow
| Action | Method | Path | Action id |
|---|---|---|---|
| Describe a Workflow | GET | /workflow/{{workflowId}} |
conn_mod_def::GK0yAngrnvA::caZXsCKpT2WupwByokydvA |
| Generate a Random Workflow Name | GET | /workflow/random-name |
conn_mod_def::GK0yAwBKSQg::9wkgZoN0RVuMMjubuMN4Qw |
| Cancel Workflow | POST | /workflow/{{workflowId}}/cancel |
conn_mod_def::GK0yAenGAfA::QcTFUonHQ4yW__wosnVctg |
| Delete a Workflow | DELETE | /workflow/{{workflowId}} |
conn_mod_def::GK0yAmnF6-A::bl1dwofARxykeMEgtCL3rA |
| Launch Workflow | POST | /workflow/launch |
conn_mod_def::GK0yA76R4QA::kpHOBJ1WQtuYOfIvT8wbBA |
| Star a Workflow | POST | /workflow/{{workflowId}}/star |
conn_mod_def::GK0yBGiqqdg::siryUoQMQwuXGh-K1D5GVA |
| Unstar a Workflow | DELETE | /workflow/{{workflowId}}/star |
conn_mod_def::GK0yBGq8GQA::0y4k2dBXRgupRgqs74wFIQ |
Workflows
| Action | Method | Path | Action id |
|---|---|---|---|
| Download a Workflow's Files | GET | /workflow/{{workflowId}}/download |
conn_mod_def::GK0yAwliPhA::K8JZhkozRqqTwbCH2E8lMg |
| List Workflows | GET | /workflow |
conn_mod_def::GK0yA907VfA::Il1Quk16QOO-Ldl67gC4hg |
| Add Labels to Workflows | POST | /workflow/labels/add |
conn_mod_def::GK0x85YA0cA::1eNvO9smTsm2Qv_-Y04UYQ |
| Delete Workflows | POST | /workflow/delete |
conn_mod_def::GK0yAnRSzag::QV9RumCkRbidcrNeU8bTIw |
| Remove Labels From Workflows | POST | /workflow/labels/remove |
conn_mod_def::GK0x9RZBRfg::7-1tuvfwQqyqNQM9gy6_Hg |
| Replace Workflow Labels | POST | /workflow/labels/apply |
conn_mod_def::GK0x9aTpfcA::DuAL1KXqQBCxqGrtZEhFoA |
Roles
| Action | Method | Path | Action id |
|---|---|---|---|
| Describe a Role by Name | GET | /roles/{{roleName}} |
conn_mod_def::GK0x-wt-2gg::r3WZnH24R-6MrXbU48Eazw |
5 more Roles actions are available through search.
This lists 90 of 229 actions. For anything not here, call search_one_platform_actions with platform seqera. The full catalog is at https://www.withone.ai/knowledge/seqera.
When a call fails
The error comes from Seqera, not from One. A 400 or 422 means your parameters do not match the schema, so re-read the knowledge and fix the field. A 401 or 403 means the connection needs re-authorizing, which no retry will fix. A 404 means the id is not on this account. A 429 means slow down. Never retry a write more than once: the first attempt may have landed.
Full catalog: https://www.withone.ai/knowledge/seqera
Integration knowledge by One (withone.ai), licensed under One-Knowledge-1.0. Attribution must be preserved in derivative works.