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beita6969

@beita6969 source repo

124 published skills · page 1 of 2

  1. Openai Image Gen · beita6969 bundle
    Batch-generate images via OpenAI Images API. Random prompt sampler + `index.html` gallery.
    0 installs
  2. Biopython Bio · beita6969
    Bioinformatics operations via Biopython. Use when: user asks about DNA/protein sequences, BLAST, or PDB structures. NOT for: clinical genomics or variant calling pipelines.
    1 install
  3. Biostatistics · beita6969
    Performs biostatistical analyses specialized for clinical and biomedical research including survival analysis, Kaplan-Meier estimation, Cox proportional hazards regression, longitudinal data modeling, and diagnostic test evaluation; trigger when users discuss clinical outcomes, survival curves, or biomedical study statistics.
    1 install
  4. Data Analysis · beita6969
    Scientific data analysis including data cleaning, exploratory data analysis (EDA), statistical testing, regression, and reporting. Uses Python with pandas, scipy, statsmodels, scikit-learn. Use when user asks to analyze data, clean a dataset, run statistics, do EDA, fit a model, or process CSV/Excel files. Triggers on "analyze this data", "clean my dataset", "run regression", "EDA", "descriptive statistics", "data processing", "correlation analysis".
    1 install
  5. Grant Writing · beita6969
    Assists with research grant proposal writing including specific aims, significance framing, innovation articulation, approach design, and budget justification for NIH, NSF, ERC, and other funding agencies; trigger when users discuss grant proposals, funding applications, or research funding strategy.
    1 install
  6. Latex Writing · beita6969
    Write and format LaTeX documents for academic journals. Use when: user asks to write LaTeX code, format papers for specific journals (Nature/Science/IEEE/ACM), create equations, tables, or BibTeX entries. NOT for: non-LaTeX writing (use paper-writing), data analysis, or literature search.
    1 install
  7. Meta Analysis · beita6969
    Perform quantitative meta-analysis with effect size calculation, forest plots, funnel plots, and heterogeneity assessment. Use when: user asks to combine results from multiple studies, calculate pooled effect sizes, assess publication bias, or create forest/funnel plots. NOT for: systematic review protocol (use systematic-review) or single-study statistics (use statsmodels-stats).
    1 install
  8. Paper Writing · beita6969
    Write scientific papers following IMRaD structure with proper citations. Use when: user asks to draft or improve a scientific paper, write specific sections, or format citations. NOT for: non-academic writing or presentation slides.
    1 install
  9. Pdb Structure · beita6969
    Query the RCSB PDB API for protein 3D structures, experimental metadata, and structure files. Use when the user needs crystal or cryo-EM structure data, PDB entries, resolution info, or structure file downloads. NOT for protein sequences/annotations (use UniProt), gene data (use NCBI), or pathway info (use KEGG).
    1 install
  10. Pubmed Search · beita6969
    Search PubMed/MEDLINE for biomedical literature via NCBI E-utilities API. Use when: (1) searching medical/biomedical papers, (2) finding clinical studies, (3) querying with MeSH terms, (4) retrieving abstracts by PMID. NOT for: non-biomedical papers (use arxiv-search or semantic-scholar), full-text access (PubMed provides abstracts), or social science literature.
    1 install
  11. Visualization · beita6969
    Create publication-quality scientific figures and plots using Python (matplotlib, seaborn, plotly). Supports bar charts, scatter plots, heatmaps, box plots, violin plots, survival curves, network graphs, and more. Use when user asks to plot data, create figures, make charts, visualize results, or generate publication-ready graphics. Triggers on "plot", "chart", "figure", "graph", "visualize", "heatmap", "scatter plot", "bar chart", "histogram".
    1 install
  12. Arxiv Search · beita6969
    Search arXiv for preprints in physics, math, CS, quantitative biology, quantitative finance, statistics, electrical engineering, economics. Use when: (1) finding preprints by topic, (2) searching by author, (3) browsing arXiv categories, (4) getting paper metadata/abstracts. NOT for: published journal articles (use crossref-search), biomedical (use pubmed-search).
    1 install
  13. Code Science · beita6969
    Scientific programming best practices including reproducible research, computational notebooks, version control for research, data management, HPC/parallel computing, and research software engineering. Use when user needs help with research code organization, reproducibility, scientific Python/R workflows, or computational infrastructure. Triggers on "reproducible research", "research code", "scientific computing", "HPC", "parallel computing", "Jupyter", "notebook", "data management plan", "research software", "code review for science".
    1 install
  14. Epidemiology · beita6969
    Performs epidemiological analyses including disease modeling (SIR/SEIR), outbreak investigation, risk factor identification, incidence/prevalence estimation, and causal inference from observational data; trigger when users discuss disease spread, public health data, or population-level health patterns.
    1 install
  15. Food Science · beita6969
    Analyzes food science topics including nutritional composition, food chemistry, food safety hazard analysis, sensory evaluation design, and food processing optimization; trigger when users discuss nutrients, food additives, HACCP, shelf life, or food product development.
    1 install
  16. Kegg Pathway · beita6969
    Query the KEGG REST API for metabolic pathways, genes, compounds, drugs, and diseases. Use when the user needs pathway mapping, gene-to-pathway links, compound info, or cross-reference ID conversion. NOT for protein sequences (use UniProt), 3D structures (use PDB), or variant/SNP data (use NCBI).
    1 install
  17. Lean4 Prover · beita6969
    Lean 4 theorem prover for formal verification. Use when: formal theorem proving, mathematical verification, proof search, type theory exploration. NOT for: numerical computation (use scipy), symbolic math (use sympy), statistical analysis (use statsmodels).
    1 install
  18. Legal Search · beita6969
    Search US and EU case law, court opinions, dockets, and regulations via CourtListener, Harvard Case Law, and EUR-Lex. Use when: (1) finding US court opinions by keyword or citation, (2) searching federal and state dockets, (3) querying EU legislation and case law, (4) looking up cases by date range or jurisdiction. NOT for: current legislation text (use congress.gov), legal advice (never provide), patent search (use USPTO APIs).
    1 install
  19. Neuroscience · beita6969
    Supports neuroscience research including brain imaging analysis (fMRI, EEG), neural circuit modeling, cognitive experiment design, and neurological disorder investigation; trigger when users discuss brain regions, neural signals, cognitive tasks, or neuroimaging data.
    1 install
  20. Nlp Analysis · beita6969
    Natural language processing for research including text mining, sentiment analysis, topic modeling, named entity recognition, text classification, and corpus analysis. Use when user needs to analyze text data, extract information from documents, do sentiment analysis, topic modeling, or text classification for research purposes. Triggers on "text mining", "sentiment analysis", "topic modeling", "NER", "named entity", "text classification", "word embeddings", "LDA", "corpus analysis", "word frequency", "TF-IDF".
    1 install
  21. Open Targets · beita6969
    Query the Open Targets Platform GraphQL API for gene-drug-disease associations, evidence scores, and therapeutic target validation. Use when the user needs disease associations for a gene, drug evidence for a target, or target prioritization for a disease. NOT for compound property lookup (use pubchem-compound), NOT for bioactivity measurements (use chembl-drug), NOT for protein 3D structures (use pdb-structure).
    1 install
  22. Census Data · beita6969
    US Census Bureau data via API. Use when: user asks about US demographics, population, housing, or economic data by geography. NOT for: non-US data or real-time statistics.
    1 install
  23. Chembl Drug · beita6969
    Query the ChEMBL REST API for drug-target interactions, bioactivity data, ADMET properties, and approved drug information. Use when the user needs drug mechanism of action, binding affinity data, target information, or pharmacokinetic properties. NOT for basic compound lookup (use pubchem-compound), NOT for gene-disease associations (use open-targets), NOT for protein 3D structures (use pdb-structure).
    1 install
  24. Dblp Search · beita6969
    Computer science bibliography via DBLP API. Use when: user asks about CS publications, author publication lists, or venue (conference/journal) metadata. NOT for: non-CS publications or citation counts.
    2 installs
  25. Ml Pipeline · beita6969
    Machine learning pipeline for scientific research including data preprocessing, feature engineering, model selection, training, evaluation, and interpretation. Covers supervised/unsupervised learning, deep learning, cross-validation, hyperparameter tuning, and model explainability. Use when user asks to build a predictive model, classify data, cluster samples, do feature selection, or apply ML to research data. Triggers on "machine learning", "classification", "clustering", "random forest", "neural network", "deep learning", "predict", "feature selection", "cross-validation", "train model".
    1 install
  26. Ncbi Entrez · beita6969
    Query NCBI E-utilities for GenBank sequences, gene info, SNPs, ClinVar variants, and literature links. Use when the user needs nucleotide/protein sequences from GenBank, gene summaries, variant data, or cross-database links. NOT for protein annotations (use UniProt), 3D structures (use PDB), or pathway mapping (use KEGG).
    1 install
  27. Peer Review · beita6969
    Conducts structured peer review of scientific manuscripts including methodological evaluation, statistical assessment, clarity analysis, and constructive feedback generation following journal-specific guidelines; trigger when users ask for manuscript critique, reviewer reports, or feedback on research papers.
    1 install
  28. Scienceclaw Classification · beita6969
    Classify scientific content by discipline, methodology, topic, and quality. Use when: user asks to categorize papers, methods, or research outputs. NOT for: simple keyword tagging or non-scientific content.
    1 install
  29. Data Visualization Expert · beita6969
    COPYRIGHT NOTICE
    2 installs
  30. Scienceclaw Summarization · beita6969
    Summarize scientific papers, datasets, experimental results, and literature reviews. Use when: (1) condensing research papers, (2) creating literature reviews, (3) summarizing experimental findings, (4) meta-analysis synthesis, (5) creating executive summaries of research. NOT for: information extraction (use scienceclaw-ie), full paper retrieval (use scienceclaw-retrieval), or writing new content (use scienceclaw-generation).
    1 install
  31. Scientific Classification · beita6969
    Classify scientific objects, detect patterns, and categorize data across astronomy, biology, and social sciences
    1 install
  32. Scienceclaw Verification · beita6969
    Verify scientific claims, check calculations, validate experimental designs, and fact-check citations. Use when: (1) checking a claim against evidence, (2) validating statistical analyses, (3) verifying experimental reproducibility claims, (4) fact-checking references, (5) adversarial review of research. NOT for: generating new content (use scienceclaw-generation), simple QA (use scienceclaw-qa).
    1 install
  33. Scientific Summarization · beita6969
    Summarize and simplify scientific literature, educational content, and research papers
    1 install
  34. Drug Discovery Pipeline · beita6969
    Orchestrates a full drug discovery workflow from target identification through lead optimization. Use when searching for drug candidates against a biological target, evaluating compound libraries, or optimizing hits for drug-likeness. NOT for pure protein structure analysis or single-compound lookups.
    1 install
  35. Social Science Analysis · beita6969
    Social science research methods including survey design, qualitative analysis, content analysis, network analysis, psychometrics, and mixed methods. Covers sociology, psychology, political science, education, and communication studies. Use when user designs surveys, analyzes qualitative data, does content analysis, builds scales, or uses mixed methods. Triggers on "survey design", "qualitative analysis", "content analysis", "Likert scale", "thematic analysis", "grounded theory", "factor analysis", "SEM", "structural equation", "psychometrics", "interview coding".
    1 install
  36. Social Science Research · beita6969
    Orchestrates a social science research workflow from literature review through data collection, text analysis, statistical modeling, and report generation. Use when conducting empirical social science research, policy analysis, or mixed-methods studies. NOT for pure natural science analysis or clinical trial data.
    1 install
  37. Clinical Trials Search · beita6969 bundle
    Search ClinicalTrials.gov with natural language queries. Find clinical trials, enrollment, and outcomes using Valyu semantic search.
    1 install
  38. Information Extraction · beita6969
    Extract structured entities, relations, and clauses from scientific and legal documents
    1 install
  39. Scienceclaw Generation · beita6969
    Generate scientific hypotheses, experimental designs, and paper drafts. Use when: user asks to propose hypotheses, design experiments, or write scientific content. NOT for: data analysis or literature search.
    1 install
  40. Scienceclaw Prediction · beita6969
    Predict scientific properties, trends, and outcomes. Use when: user asks for property prediction, trend forecasting, or model-based estimation. NOT for: historical data lookup or real-time monitoring.
    1 install
  41. Transformers Inference · beita6969
    HuggingFace Transformers for model inference. Use when: text classification, NER, question answering, summarization, embeddings, zero-shot classification. NOT for: training large models (use cloud), simple regex/rule-based tasks, production serving at scale (use vLLM).
    1 install
  42. Environmental Science · beita6969
    Analyzes environmental and climate data including temperature trends, pollution monitoring, ecological modeling, carbon footprint assessment, and biodiversity metrics; trigger when users discuss climate change, ecosystems, pollutants, or sustainability assessments.
    1 install
  43. Scienceclaw Discovery · beita6969
    Identify research gaps, synthesize cross-disciplinary insights, and generate novel hypotheses. Use when: user asks about unexplored areas, cross-field connections, or new research directions. NOT for: routine literature review or data analysis.
    1 install
  44. Scienceclaw Reasoning · beita6969
    Perform multi-step scientific reasoning, proof construction, causal inference, and logical argumentation. Use when: (1) deriving conclusions from premises, (2) causal analysis, (3) mathematical proofs, (4) hypothesis evaluation, (5) counterfactual reasoning. NOT for: simple factual questions (use scienceclaw-qa), data analysis (use code-execution), or literature search (use scienceclaw-retrieval).
    1 install
  45. Scienceclaw Retrieval · beita6969
    Retrieve scientific information from databases, literature, and knowledge bases. Use when: (1) finding relevant papers, (2) querying scientific databases, (3) cross-referencing findings, (4) building bibliographies, (5) systematic literature search. NOT for: answering questions (use scienceclaw-qa), summarizing (use scienceclaw-summarization), or data analysis (use code-execution skill).
    1 install
  46. Scientific Generation · beita6969
    Generate scientific code, protocols, and domain-specific text with quality control
    1 install
  47. Scientific Manuscript · beita6969
    COPYRIGHT NOTICE
    1 install
  48. Scientific Prediction · beita6969
    Predict material properties, economic indicators, and scientific outcomes using computational models
    1 install
  49. Linguistics Analysis · beita6969
    Analyze language structures, typological features, and semantic change across languages
    1 install
  50. Scientific Reasoning · beita6969
    Mathematical and physical reasoning with formal proof construction and problem solving
    1 install
  51. Scientific Retrieval · beita6969
    Retrieve and recommend relevant documents from financial, historical, and scientific archives
    1 install
  52. Astronomy Cosmology · beita6969
    Analyzes astronomical observations and cosmological models including telescope data processing, celestial mechanics calculations, stellar evolution, galaxy classification, and cosmological parameter estimation; trigger when users discuss stars, galaxies, exoplanets, dark matter, or the universe's large-scale structure.
    1 install
  53. Citation Management · beita6969 bundle
    Comprehensive citation management for academic research. Search Google Scholar and PubMed for papers, extract accurate metadata, validate citations, and generate properly formatted BibTeX entries. This skill should be used when you need to find papers, verify citation information, convert DOIs to BibTeX, or ensure reference accuracy in scientific writing.
    1 install
  54. Deep Research Swarm · beita6969
    COPYRIGHT NOTICE
    2 installs
  55. Experimental Design · beita6969
    Design rigorous scientific experiments with power analysis and controls. Use when: user needs to plan an experiment, calculate sample sizes, or set up controls. NOT for: running experiments or analyzing collected data.
    1 install
  56. Geospatial Analysis · beita6969
    Performs geospatial data analysis including GIS operations, spatial statistics, remote sensing image processing, geocoding, and cartographic visualization; trigger when users discuss maps, coordinates, satellite imagery, spatial patterns, or geographic data.
    1 install
  57. Knowledge Discovery · beita6969
    Discover patterns, build knowledge graphs, and extract insights from linguistic and historical data
    1 install
  58. Knowledge Synthesis · beita6969
    COPYRIGHT NOTICE
    1 install
  59. Materials Screening · beita6969
    Orchestrates a materials screening workflow from database search through property filtering to stability assessment and ranking. Use when identifying candidate materials for batteries, catalysts, semiconductors, or other applications. NOT for molecular chemistry or biological compound analysis.
    1 install
  60. Psychology Research · beita6969
    Conduct psychological research analysis including mental health, cognitive science, and behavioral studies
    1 install
  61. Regulatory Drafting · beita6969 bundle
    COPYRIGHT NOTICE
    1 install
  62. Research Literature · beita6969 bundle
    COPYRIGHT NOTICE
    1 install
  63. Research Reflection · beita6969
    Reflect on completed research tasks to improve future performance. Use when: a research task has just been completed and the agent should evaluate its own process, store lessons learned, or retrieve past reflections before starting new work. NOT for: active research execution or data analysis.
    1 install
  64. Statistical Testing · beita6969
    Advanced statistical testing including hypothesis testing, Bayesian analysis, survival analysis, time series, multivariate methods, and meta-analysis. Use when user needs specific statistical tests beyond basic EDA, power analysis, Bayesian inference, survival curves, time series forecasting, or meta-analysis. Triggers on "hypothesis test", "Bayesian", "survival analysis", "time series", "meta-analysis", "bootstrap", "permutation test", "mixed model", "structural equation".
    1 install
  65. Asreview Screening · beita6969
    Screen papers for systematic reviews using ASReview active learning. Use when: user has a large set of papers to screen for inclusion/exclusion, wants to prioritize relevant papers, or needs to reduce manual screening workload. NOT for: searching papers (use literature-search) or meta-analysis (use meta-analysis).
    1 install
  66. Copernicus Climate · beita6969
    Access Copernicus Climate Data Store (CDS) for ERA5 reanalysis, climate projections, and satellite observations. Use when: (1) retrieving historical weather/climate data, (2) downloading ERA5 reanalysis fields, (3) querying climate projections (CMIP), (4) getting satellite-derived climate variables. NOT for: real-time weather forecasts (use weather APIs), ocean biology (use Copernicus Marine), air quality (use CAMS).
    1 install
  67. Economics Analysis · beita6969
    Economic analysis including econometrics, causal inference, time series economics, game theory, welfare analysis, and economic modeling. Use when user works with economic data, regression analysis, instrumental variables, difference-in-differences, RDD, panel data, or economic theory. Triggers on "econometrics", "regression", "causal inference", "instrumental variable", "difference-in-differences", "panel data", "game theory", "supply demand", "GDP", "inflation", "economic model".
    1 install
  68. Education Research · beita6969
    Supports education research including pedagogical method evaluation, learning analytics, assessment design, curriculum development analysis, and educational technology evaluation; trigger when users discuss teaching effectiveness, learning outcomes, educational interventions, or student performance data.
    2 installs
  69. Pymatgen Materials · beita6969
    Materials science computation with pymatgen. Use when: (1) crystal structure creation and manipulation, (2) phase diagram construction, (3) electronic structure analysis, (4) symmetry and space group operations, (5) VASP input/output parsing. NOT for: molecular chemistry (use rdkit-chemistry), protein structure (use biopython-bio), or general numerical computation (use scipy-analysis).
    1 install
  70. Scientific Writing · beita6969
    Assist with scientific paper writing, LaTeX formatting, abstract drafting, review responses, grant proposals, and academic communication. Use when user asks to write/edit a paper section, draft an abstract, format in LaTeX, respond to reviewer comments, write a grant proposal, or improve academic writing. Triggers on "write abstract", "draft introduction", "LaTeX", "reviewer response", "grant proposal", "improve my writing", "paper draft", "methods section".
    1 install
  71. Wikidata Knowledge · beita6969
    Query Wikidata for structured knowledge using SPARQL and entity search. Use when: (1) finding structured facts about entities (people, places, organizations), (2) querying relationships between entities, (3) cross-referencing external identifiers (Wikipedia, VIAF, GND, ORCID), (4) building knowledge graphs from linked data. NOT for: full-text article content (use Wikipedia API), scientific literature (use semantic-scholar), geospatial data (use OpenStreetMap).
    1 install
  72. Astropy Astronomy · beita6969
    Astronomical computations via Astropy. Use when: user asks about celestial coordinates, FITS files, or cosmological calculations. NOT for: telescope control or real-time observation planning.
    1 install
  73. Citation Analysis · beita6969
    Analyze citation networks, compute bibliometric indicators, and identify research fronts. Use when: user asks about citation patterns, h-index, co-authorship networks, research trends, or bibliometric analysis. NOT for: literature searching (use literature-search) or writing papers (use paper-writing).
    1 install
  74. Experiment Design · beita6969
    Design scientific experiments including sample size calculation, randomization, control groups, blinding, and study protocols. Covers RCTs, quasi-experiments, factorial designs, A/B tests, survey design, and observational studies. Use when user asks to design an experiment, calculate sample size, plan a study, set up controls, or create a research protocol. Triggers on "design experiment", "sample size", "power analysis", "study design", "control group", "randomization", "A/B test", "factorial design", "survey design".
    1 install
  75. Fact Verification · beita6969
    Verify scientific claims, political statements, and environmental assertions against evidence
    1 install
  76. Genomics Analysis · beita6969
    Orchestrates a genomics analysis workflow from gene query through expression analysis to pathway enrichment. Use when investigating gene function, analyzing expression data, or performing pathway-level interpretation. NOT for pure protein structure modeling or drug-target interaction analysis.
    1 install
  77. Geopandas Spatial · beita6969
    Geospatial and climate data analysis with geopandas and xarray. Use when: (1) geographic vector data analysis, (2) climate and weather NetCDF data, (3) spatial joins and overlay operations, (4) map visualization, (5) CRS transformations and area calculations. NOT for: satellite imagery ML (use rasterio/torchgeo), real-time GPS tracking, or interactive web maps (use folium/leaflet directly).
    1 install
  78. Literature Search · beita6969
    Comprehensive multi-database scientific literature search orchestrating Semantic Scholar, OpenAlex, arXiv, PubMed, and CrossRef. Use when: (1) systematic literature review, (2) finding all relevant papers on a topic, (3) checking state of the art, (4) building comprehensive bibliographies. NOT for: single-database queries (use specific search skills), data analysis (use code-execution).
    1 install
  79. Materials Project · beita6969
    Query the Materials Project API v3 for crystal structures, band gaps, formation energies, and thermodynamic stability of 150k+ inorganic materials. Use when: (1) searching materials by chemical formula, (2) looking up material properties by MP ID, (3) filtering materials by band gap, energy, or density, (4) finding stable phases for a composition. NOT for: organic molecules (use pubchem-compound), proteins (use uniprot-protein), drug compounds (use chembl-drug).
    1 install
  80. Materials Science · beita6969
    Analyzes material properties including crystal structures, phase diagrams, mechanical/thermal/electronic properties, and supports materials discovery through computational approaches; trigger when users discuss alloys, ceramics, polymers, nanomaterials, or materials characterization.
    1 install
  81. Political Science · beita6969
    Analyze political data, fact-check claims, and study policy impacts using evidence-based methods
    1 install
  82. Protein Structure · beita6969
    Analyzes protein 3D structures, performs homology modeling, interprets AlphaFold predictions, conducts molecular docking, and evaluates protein-ligand interactions; trigger when users ask about PDB files, folding, binding sites, or structural biology.
    1 install
  83. Quantum Computing · beita6969
    Designs and analyzes quantum computing solutions including quantum circuit construction, algorithm implementation, error correction, and quantum advantage assessment; trigger when users discuss qubits, quantum gates, quantum algorithms, or quantum hardware.
    1 install
  84. Scanpy Singlecell · beita6969
    Single-cell RNA-seq analysis with scanpy and anndata. Use when: (1) scRNA-seq preprocessing and QC, (2) clustering and cell type annotation, (3) differential expression analysis, (4) trajectory and pseudotime analysis, (5) UMAP/tSNE visualization. NOT for: bulk RNA-seq differential expression (use DESeq2/edgeR), protein structure analysis (use pdb-structure), or imaging data.
    1 install
  85. Signal Processing · beita6969
    Performs signal processing tasks including spectral analysis (FFT), digital filtering, time-frequency decomposition, noise reduction, and modulation/demodulation; trigger when users discuss waveforms, frequency spectra, filters, or time series in engineering contexts.
    1 install
  86. Statsmodels Stats · beita6969
    Statistical analysis via statsmodels. Use when: user asks for regression, hypothesis testing, or time series analysis. NOT for: machine learning models or deep learning.
    1 install
  87. Systematic Review · beita6969
    Orchestrates a systematic review and meta-analysis workflow following PRISMA 2020 guidelines, from protocol development through multi-database search, screening, data extraction, and evidence synthesis. Use when conducting evidence-based reviews, meta-analyses, or scoping reviews. NOT for single-study analysis or narrative literature surveys.
    1 install
  88. Math Computation · beita6969
    Mathematical computation including symbolic math, numerical methods, linear algebra, calculus, differential equations, optimization, and mathematical modeling. Uses Python with SymPy, NumPy, SciPy. Use when user asks to solve equations, compute integrals/derivatives, do matrix operations, solve ODEs/PDEs, optimize functions, or build mathematical models. Triggers on "solve equation", "integral", "derivative", "matrix", "eigenvalue", "differential equation", "optimization", "linear algebra", "symbolic math", "proof".
    1 install
  89. Nltk Linguistics · beita6969
    NLP and corpus analysis via NLTK. Use when: user asks about tokenization, POS tagging, parsing, sentiment, or corpus statistics. NOT for: deep learning NLP or transformer models.
    1 install
  90. Pubchem Compound · beita6969
    Search and retrieve chemical compound data from PubChem's PUG REST API (110M+ compounds). Use when the user needs compound properties, molecular structures, similarity searches, substructure searches, or bioactivity data. NOT for protein structures (use pdb-structure), NOT for drug-target interactions (use chembl-drug), NOT for gene-disease associations (use open-targets).
    1 install
  91. Semantic Scholar · beita6969
    Search Semantic Scholar for academic papers across all disciplines with citation graph analysis. Use when: (1) finding papers across disciplines, (2) citation/reference graph traversal, (3) author search, (4) paper recommendations, (5) large-scale bibliometric analysis. NOT for: specific database access (use pubmed for biomedical, arxiv for preprints).
    1 install
  92. Wikipedia Search · beita6969 bundle
    Search and fetch structured content from Wikipedia using the MediaWiki API for reliable, encyclopedic information
    1 install
  93. Chemistry Tools · beita6969
    Computational chemistry tools including molecular structure, chemical reactions, thermodynamics, spectroscopy analysis, and cheminformatics. Use when user works with chemical formulas, molecular structures, reaction balancing, thermodynamic calculations, or chemical databases (PubChem, ChemSpider). Triggers on "chemical structure", "molecular weight", "balance equation", "reaction", "thermodynamics", "spectroscopy", "SMILES", "PubChem", "chemical formula", "stoichiometry".
    1 install
  94. Crossref Search · beita6969
    Academic metadata search via CrossRef API. Use when: user needs DOI resolution, citation counts, journal metadata, or publisher info. NOT for: full-text access or downloading papers.
    1 install
  95. Genome Analysis · beita6969
    Performs genomics analyses including gene expression profiling, BLAST sequence alignment, GWAS interpretation, variant calling, and genome assembly tasks; trigger when the user mentions DNA/RNA sequences, SNPs, gene panels, or comparative genomics.
    1 install
  96. Nano Banana Pro · beita6969 bundle
    Generate or edit images via Gemini 3 Pro Image (Nano Banana Pro).
    1 install
  97. Networkx Social · beita6969
    Social network and graph analysis via NetworkX. Use when: graph analysis, community detection, centrality measures, network visualization, knowledge graphs, bipartite networks, graph I/O. NOT for: large-scale graph processing (>1M nodes), GPU graph analytics (use cuGraph).
    1 install
  98. Openalex Search · beita6969
    Open academic metadata via OpenAlex API. Use when: user needs author profiles, institution data, concept mapping, or open citation data. NOT for: full-text search or downloading papers.
    1 install
  99. Patent Analysis · beita6969
    Conducts patent landscape analysis including prior art searches, patent claim interpretation, freedom-to-operate assessment, and intellectual property strategy for scientific inventions; trigger when users discuss patents, prior art, IP protection, or technology licensing.
    1 install
  100. Rdkit Chemistry · beita6969
    Molecular chemistry operations via RDKit. Use when: user asks about molecular structures, SMILES, chemical properties, or fingerprints. NOT for: reaction databases or wet lab protocols.
    1 install