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BIsnake2001

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1. ▌
   Dna Methylation Alignment Bismark · bisnake2001

   Align bisulfite sequencing DNA methylation reads using Bismark only, with explicit validation of reference preparation, library layout detection, output organization, logging, and alignment QC. Use it for WGBS, RRBS, or other bisulfite-converted DNA methylation sequencing data when raw FASTQ files must be aligned before methylation extraction and downstream analysis.
   2 installs
2. ▌
   Reads Mapping · bisnake2001

   Align ChIP-seq or ATAC-seq FASTQ files to a reference genome using Bowtie2, with strict input validation, library layout detection, output organization and logging. Use it when raw sequencing reads must be converted into sorted/indexed BAM files before downstream QC, peak calling, or footprinting.
   2 installs