Boom5426
- 30 skills
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- 22 hours ago last updated
- ▌ Aivc Curator · boom5426 bundleUse when the user wants to judge whether a paper, dataset, benchmark, blog, or related resource belongs in Awesome-Virtual-Cell, whether an existing README entry should be updated, where an item should be placed, or how it should be written in house style.
- ▌ Awesome Builder · boom5426 bundleUse when the user wants to design, restructure, diagnose, or improve an awesome-style repository, especially when a curated README feels hard to browse, poorly scoped, or difficult for new users.
- ▌ Figure Recommender · boom5426 bundleUse when the user wants help choosing a scientific chart type, matching a data-storytelling goal to a figure, or finding the right notebook template in Awesome-Scientific-Figures.
- ▌ Aivc Literature Scout · boom5426 bundleUse when the user wants a recent literature sweep for Awesome-Virtual-Cell, especially for latest papers, Nature-family journals, major labs, big groups, or a time-bounded update of what the README is missing.
- ▌ Write Scientific Manuscript · boom5426 bundleDiagnose and repair the clarity and logic of manuscript prose, journal-agnostic. Use when a passage is technically correct but hard to follow: buried topic sentences, missing logical bridges, ambiguous referents, abstract noun chains, overloaded sentences, incomplete comparisons with no stated dataset or metric or direction, scope qualifiers placed too far from the claim, and invented or inflated terminology that should have been an ordinary word. Also covers writing for a broad scientific reader without losing precision, section-by-section logic patterns, paragraph-level reverse outlines, and keeping observation separate from interpretation. This is the layer between structure and punctuation: use manuscript-optimizer when the claim hierarchy itself is unstable, and scientific-prose-style for the final sentence-level pass.
- ▌ Rebuttal Response · boom5426 bundleAnalyze, draft, revise, or audit scientific peer-review response letters and point-by-point rebuttals. Use for reviewer comments, response letters, rebuttals, revision summaries, quoted manuscript changes, replies that must align with a manuscript or Supplementary Information, and submission-ready checks of direct question-answer alignment, evidence, figures, tables, notes, panels, terminology, numbers, and internal citations. Especially useful when replies must reuse the reviewer's terms, map every sub-question to an explicit answer, report new analyses or experiments, identify exact revision locations, or distinguish mandatory fixes from optional polishing.
- ▌ Scientific Writing · boom5426 bundleUse when writing or revising scientific manuscripts, abstracts, figures, or references for journal submission and you need full-paragraph prose, scientific structure, citation-style guidance, or reporting-guideline support.
- ▌ Paper Analyzer · boom5426 bundleUse when deeply analyzing a single paper and producing structured notes on claims, methods, figures, evaluation, strengths, limitations, and related work.
- ▌ Manuscript Optimizer · boom5426Use when auditing, restructuring, or revising a research manuscript whose scientific question, claim hierarchy, evidence chain, section logic, figures, terminology, or prose may be unclear or out of sync. Apply before sentence-level polishing, especially for whole drafts, major revisions, resubmissions, overclaiming, experiment-by-experiment Results, inaccessible narratives, or manuscripts that need a claim-driven architecture.
- ▌ Results Analysis · boom5426 bundleUse when analyzing experimental results, validating comparisons, generating paper-ready results text, or turning model-evaluation outputs into figures, tables, and defensible claims.
- ▌ Stats Reporting Audit · boom5426 bundleAudit, revise, or draft manuscript statistical reporting for Nature / high-impact journal submissions. Use when the user asks to check statistical analysis sections, p values, confidence intervals, sample size, biological versus technical replicates, randomization, blinding, multiple-comparison correction, model assumptions, figure legends, Results statistics wording, reviewer comments about statistics, or Chinese academic drafts needing publication-ready Statistical analysis text. Also trigger on general paper-statistics requests such as 统计审查、统计分析小节、统计方法、p值、样本量、重复数、多重比较、置信区间、效应量、图注统计、审稿人统计意见.
- ▌ Anti Defensive Writing · boom5426 bundleRemove defensive writing from a draft: unnecessary caveats, disclaimers, hedges, apology-like framing, self-limiting negations, and over-explanations added to pre-empt an imagined critic, while preserving the scope, accuracy, safety, ethical, legal, and methodological limits that are load-bearing. Runs at the rhetorical-posture layer, after the claim hierarchy and the integrity audits are settled and before the final sentence pass. Load when a draft reads hedged, over-caveated, apologetic, verbose, or timid, when a paragraph opens with a limitation, when the text keeps saying what it does not claim, or on request: make it more direct, more confident, less defensive, cut the hedging, 防御性写作, 太多免责, 写得太怂, 太啰嗦, 删掉多余的限定, 让语气更肯定, 别老说自己不主张什么.
- ▌ Scientific Prose Style · boom5426Prose-quality rules for writing scientific manuscript text — abstract, introduction, results, discussion. The headline rule is a strict em-dash budget: the long dash (—) is overused and reads as a stylistic tic, so cap it and rewrite with commas, colons, parentheses, or a period. Also covers hedging, sentence rhythm, and paragraph openers. Load whenever drafting or revising manuscript prose (not figures; that is figure-planner).
- ▌ Draft Marker Discipline · boom5426 bundleUse when a manuscript is being drafted across many sessions and needs auditable open-question tracking: in-source draft markers with distinct jobs, triage of open items by what would actually resolve each one, word counts that exclude draft apparatus, safe archival of superseded material, and assertion-guarded scripted edits. Load before doing a batch pass over TODO markers or before quoting a manuscript's length.
- ▌ Academic Researcher · boom5426Use when conducting literature reviews, summarizing papers, comparing methodologies, identifying research gaps, or supporting scholarly writing across disciplines.
- ▌ Results Section Revision · boom5426Use when revising a scientific manuscript Results section whose figures, evidence, and main claims are mostly fixed, but subsection flow, paragraph openings, reader guidance, and argumentative progression still feel abrupt, repetitive, or figure-by-figure.
- ▌ Claim Source Verification · boom5426 bundleUse when a manuscript's claims need to be checked against the sources cited for them, when literature search results must be verified before they enter a draft, or when an agent or collaborator has proposed references that have not yet been adversarially reviewed. This is claim-to-evidence verification, not bibliography hygiene; for duplicate keys, DOI syntax, and metadata cleanup use citation-verifier instead.
- ▌ Reference Audit Guide · boom5426 bundleVerify that cited references actually exist and that their metadata matches, using the runnable scripts this skill ships for CrossRef, Semantic Scholar, arXiv, and PubMed. Use when the bibliography must be checked against live sources rather than inspected locally: detecting fabricated or hallucinated citations, confirming that DOIs resolve, and matching title, authors, venue, and year against the record. Also covers the underlying verification principles and reference-audit best practices. For an offline hygiene pass over a .bib or .tex file, run citation-verifier first; for whether a real source supports the sentence citing it, run claim-source-verification.
- ▌ Academic Presentations · boom5426 bundleCreate academic presentation slide decks and optionally demo videos from research papers. Use when the user asks to "make slides", "create a deck", "make a presentation", "demo video", "paper slides", "conference talk slides", or wants to turn a paper into a visual presentation. Covers slide generation, narration scripts, TTS audio, and video assembly.
- ▌ Nature Portfolio Playbook · boom5426 bundleUse when choosing among Nature, Nature Methods, or Nature Biotechnology, or when preparing a Nature Portfolio life-science manuscript for venue fit, article-type framing, and policy-aware pre-submission checks.
- ▌ Review Article Architecture · boom5426 bundleUse when writing, restructuring, or auditing a Review, survey, or Perspective rather than a research article, especially a commissioned one written across many sessions. Covers the governing plan document, drift detection, single-definition thesis and field judgements, section-owns-figure allocation, display-item budgets, four-state status markers, and authorship-blank discipline. For research articles with Results and Methods, use manuscript-optimizer instead.
- ▌ Figure Planner · boom5426Use when designing, restructuring, or auditing manuscript figures and you need to define one main claim per figure, assign panel roles, align legends with the text, or decide what belongs in main figures versus supplement.
- ▌ Paper Workflow · boom5426Entry point for any manuscript request that does not name a specific skill. Load this FIRST whenever the ask is general, then run the chain it prescribes. Covers optimize my paper, improve the manuscript, polish this draft, make this better, clean it up, help with my paper, review my writing, get this ready to submit, work on the paper, make it more direct, less defensive, cut the hedging, too many caveats, and the Chinese equivalents 优化论文, 改论文, 润色论文, 帮我看看论文, 论文写作, 学术写作, 把论文弄好, 论文修改, 投稿前检查, 防御性写作, 太多免责, 写得太怂, 太啰嗦, 让语气更肯定. Also decides which skill applies and how to sequence manuscript work from project setup through submission and rebuttal, including the separate path for a Review, survey, or Perspective. A general manuscript request is never served well by one skill alone; this file decides which chain to run.
- ▌ Figure Style · boom5426 bundlePublication-grade figure correctness and legibility rules for final-deliverable figures — not every plot. Quick look or iterating on the analysis (EDA scatters, sanity-check histograms)? Plot plainly without this skill. Producing a figure that ships — report, paper, export, or kept artifact — load this skill first and call `apply_figure_style()` — sets a role-mapped font-size ladder, outward ticks, frameless legends, and 300-dpi output. The skill is a checklist, not a house look: data fidelity (claim-titles tested against every row, excluded data never enters summaries), label economy (floor and ceiling), color threading, chart-choice-by-data-shape, layout, and a render-then-verify QA loop (bbox collision + per-panel perceptual check). Ships helpers: focal_palette, bar_with_points, strip_with_median, end_of_line_labels, panel_letter, set_frame, panel_crops. For figure planning (one claim per figure, panel roles) use `figure-planner`; for the full Nature figure production workflow use `nature-figure`.
- ▌ Paper Bootstrap · boom5426 bundleUse when starting a new manuscript project or cleaning up an existing paper directory and you need a standard structure, active source files, project memory, and venue defaults before deeper writing begins.
- ▌ Nature Figure · boom5426 bundleSubmission-grade Nature/high-impact journal figure workflow for Python or R, plus optional OpenRouter GPT Image 2 manuscript schematic generation when the user explicitly asks for AI-generated graphical abstracts, concept schematics, mechanism diagrams, or paper schematic illustrations. Use whenever the user asks to create, revise, audit, or polish manuscript figures, multi-panel scientific plots, figures4papers-style matplotlib plots, journal-ready SVG/PDF/TIFF outputs, or OpenRouter/API-generated schematic drafts, especially for Nature-family or other high-impact journals. Before plotting or image generation, define the figure's conclusion, evidence logic, export needs, and review risks. For plotting tasks, honor an explicit Python/R choice, otherwise reuse the saved nature-figure backend preference; if no preference exists, ask once whether the user prefers Python or R and save that answer for future calls. For explicit OpenRouter/GPT Image 2 schematic generation, do not ask Python or R; use the AI-schemat
- ▌ Submission Audit · boom5426 bundleUse when a manuscript is close to submission or resubmission and you need a preflight audit for claim support, figure-panel coverage, legend sync, methods references, terminology stability, and venue-facing risks.
- ▌ Paper Reviewer · boom5426 bundleReferee-side skill for Nature Portfolio manuscripts, in four modes. Write a referee report: methodology, statistics, reporting standards, reproducibility, and data and code availability. Inventory a report you received: split it into every ask and sub-ask, in the referee's own words, own numbering, and own order, so that each one can be answered separately and nothing is missed. Grade a drafted reply the way an impatient referee reads it: one reply per ask, the referee's own comment verbatim above its answer, the answer in the first sentence, no invented vocabulary, and every reply landing somewhere in the manuscript. Use when the ask is review this manuscript, write a referee report, what will reviewers attack, turn these reviewer comments into a checklist, answer each comment one by one, did I miss a reviewer point, would this reply satisfy the reviewer, 审稿, 写审稿意见, 模拟审稿, 拆解审稿意见, 逐个回复, 逐条对照, 有没有漏回, 审稿人会不会接受, 以审稿人视角检查回复, 回复够不够直白. To choose the stance on each ask, calibrate a claim to the evidence, and assembl
- ▌ Citation Verifier · boom5426 bundleUse when checking manuscript citations, bibliography hygiene, DOI or PMID completeness, placeholder references, or BibTeX consistency before submission or revision.
- ▌ Data Availability · boom5426 bundleUse when drafting, auditing, or revising Data Availability statements, repository plans, accession-number placement, source-data coverage, or restricted-data wording for journal submission or resubmission.