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flonat

@flonat source repo

93 published skills

  1. Cross Language Check · flonat
    Replicate a quantitative analysis in a second language (R↔Python↔Stata↔Julia) and compare outputs for implementation errors. Use when an existing empirical result needs independent cross-language verification. Not for reviewing one implementation in place; use $code-suite.
    1 install
  2. Brief Compliance Check · flonat
    Check a LaTeX coursework submission against the requirements in a supplied PDF assessment brief. Use when verifying format, required sections, word limits, or deliverables before submission. Not for general prose proofreading; use $proofread.
    1 install
  3. Tailscale Mosh Recover · flonat bundle
    Diagnose and recover Mac Mini remote-access failures across Tailscale, mosh, resolver state, and public relays. Use when mosh hangs, the headless Mini disappears after a Tailscale change, or RustDesk/VNC/AnyDesk cannot reach its relay. Not for ordinary machine synchronization.
    1 install
  4. Computational Experiments · flonat bundle
    Scaffold, execute, analyse, and publish computational research experiments through a reproducible staged workflow. Use when a research question requires simulations or computational sweeps rather than a one-off script.
    1 install
  5. Init Project Orchestration · flonat bundle
    Create or migrate project-level agents, repeatable project workflows, and planning state from one client-neutral contract, then render repository-scoped adapters for both Claude Code and Codex. Use when a research project needs role separation, project commands, formal phase tracking, or conversion from an existing Claude-only .claude/agents and .claude/commands setup.
    1 install
  6. Venue Guidelines Compliance · flonat bundle
    Audit a paper and submission package against current official venue requirements for its venue, track, article type, cycle, and stage. Use when checking templates, limits, anonymity, declarations, or required files before submission or inside $pre-submission-report. Not for venue recommendations.
    1 install
  7. Retarget Journal · flonat
    Retarget an active manuscript to a different journal by reconciling venue identity, files, bibliography, citations, and submission-facing metadata. Use when a new target journal has already been chosen and the paper package must change. Not for choosing a venue; use the venue-fit workflow.
    1 install
  8. Sync Permissions · flonat
    Reconcile the current project's Claude and Codex permission surfaces with the canonical global policy. Use when project permissions are missing, stale, or inconsistent after setup or migration. Not for syncing skills, hooks, or agents; use $sync-ai-infra.
    1 install
  9. Weakness Scanner · flonat
    Identify recurring weak arguments, unsupported assumptions, and vulnerable inference patterns across a literature corpus. Use when stress-testing a body of work rather than reviewing one manuscript. For one paper's argument, use the appropriate paper-review workflow.
    1 install
  10. Compile Knowledge · flonat
    Compile literature, meeting notes, session logs, and code findings into a structured per-project knowledge wiki. Use when project evidence is scattered across source records and needs synthesis into durable articles. Not for promoting existing articles into the global vault wiki; use $wiki-grow.
    1 install
  11. Experiment Design · flonat bundle
    Design empirical studies through power analysis, pre-analysis planning, QSF parsing, and survey architecture. Use when specifying sampling, measurement, treatment, or analysis before data collection. Not for causal identification alone; use $causal-design.
    1 install
  12. Multi Perspective · flonat bundle
    Explore a research question through several independent analytical perspectives and synthesize their agreements and disagreements. Use when one line of reasoning is insufficient and distinct viewpoints should be preserved.
    1 install
  13. Pipeline Manifest · flonat
    Build a traceability manifest linking analysis scripts to inputs, outputs, and manuscript figures or tables. Use when documenting a computational pipeline or locating the source of a reported artefact. Not for verifying that paper claims match code outputs; use the code-paper auditor.
    1 install
  14. Proof Readability · flonat
    Improve the exposition and readability of a mathematical proof already verified as correct without changing its mathematics. Use when polishing a lemma, theorem, proof, or appendix after correctness checks. Not for verifying the proof; use $verify-math.
    1 install
  15. Replication Audit · flonat
    Map claims in a literature to independent replications, robustness checks, failures, and unresolved evidence gaps. Use when assessing the empirical reliability of a body of findings rather than reproducing one project's code. For package rerunnability, use $replication-package.
    1 install
  16. Test Iterate Loop · flonat
    Autonomously diagnose a codebase, apply minimal fixes, and rerun tests until they pass or a real blocker is reached. Use when the user explicitly requests an iterative fix-until-green loop across Python, R, Julia, or HPC workflows.
    1 install
  17. Init Project Light · flonat
    Bootstrap a lightweight project with minimal guidance, context, and repository structure. Use when a small non-research project needs durable AI collaboration without the full research or course scaffold. Not for formal research projects; use $init-project-research.
    1 install
  18. Latex Health Check · flonat
    Compile all LaTeX projects and report cross-project build consistency. Use when checking whether a collection of papers builds cleanly. Not for rendered visual inspection after a clean build; use $latex-polish.
    1 install
  19. Strategic Revision · flonat bundle
    Turn external referee correspondence or internal pre-submission feedback into a provenance-safe, DAG-validated revision master plan with atomic tasks, dependencies, critical path, and execution blocks. Use when feedback exists but must be converted into an approved implementation sequence. Not for drafting the reviewer response itself; use $review-response.
    2 installs
  20. Synthesise Reviews · flonat
    Deduplicate and reconcile multiple completed review reports into one prioritised revision plan with conflicts and dependencies made explicit. Use when parallel reviewers have returned findings that need a single action sequence. Not for running the reviews; use $review-cluster.
    1 install
  21. Update Project Doc · flonat
    Update a project's own CLAUDE.md, README.md, or docs/ to reflect current state. Use when the user asks to update a project's own CLAUDE.md, README.md, or docs/ to reflect current state.
    1 install
  22. Init Project Course · flonat bundle
    Bootstrap a university course or module folder with the canonical teaching structure, guidance, and starter files. Use when creating or migrating a course workspace. Not for checking an existing course without modifying it; use $audit-project-course.
    1 install
  23. Replication Package · flonat bundle
    Assemble, anonymize, validate, or audit a research replication package. Use when preparing code and permitted data for reviewer or public release. Not for auditing code quality alone; use $code-suite or $replication-audit as appropriate.
    1 install
  24. Wire Shared Package · flonat
    Add or repair an editable shared Python-package dependency across consuming projects, including clone-local configuration and verification. Use when multiple repositories must import the same local package source. Not for one project's ordinary environment setup; use $python-env.
    1 install
  25. Review Cluster · flonat
    Deliver a mid-draft adversarial review of a paper — runs paper-critic + domain-reviewer + claim-verify + blindspot in parallel, optionally adds clarity-reviewer, then auto-synthesises into a prioritised revision plan. Use when the user requests a mid-draft adversarial review of a paper — runs paper-critic + domain-reviewer + claim-verify + blindspot in parallel, optionally adds clarity-reviewer, then auto-synthesises into a prioritised revision plan. Distinct from pre-submission-report (final-gate kitchen sink, 14 checks) — this is the active-drafting feedback loop. Triggers: 'review my draft', 'adversarial review', 'cluster review', 'mid-draft critique', 'feedback before pre-submission'.
    1 install
  26. Session Health · flonat
    Check whether the current session has coherent guidance, focus, handoff state, working-tree ownership, and enough context to proceed safely. Use when starting, resuming, or diagnosing a confused session. Not for auditing the machine or deployed AI infrastructure; use $system-audit.
    1 install
  27. Symbolic Check · flonat
    Use SymPy to prove or refute a self-authored algebraic identity, derivative, limit, comparative-static sign, or closed form. Use when exact symbolic manipulation can settle the claim. For parameter sweeps or full theorem proving, use $numerical-check or $lean-check.
    1 install
  28. Synthetic Data · flonat bundle
    Generate structurally realistic synthetic datasets for pipeline prototyping, test coverage, or prospective power analysis. Use when code or design must be exercised before real data are available or accessible. Never substitute synthetic records for governed raw data.
    1 install
  29. Voice Analyzer · flonat
    Analyze representative writing samples into a portable personal voice profile and style guide. Use when establishing voice-matched editing for a new project or refreshing an outdated profile. Not for a target journal's editorial style; use $journal-voice.
    1 install
  30. Webapp Testing · flonat bundle
    Exercise and verify a local web application through Playwright, including user flows and rendered behaviour. Use when testing a running local app rather than issuing an isolated browser command. For ad hoc automation, use $playwright-cli.
    1 install
  31. Devils Advocate · flonat bundle
    Adversarially challenge research assumptions, mechanisms, and arguments in writing. Use when stress-testing a claim or design before committing to it. Not for an interactive oral drill or a full referee report; use $grill-me or a review agent.
    1 install
  32. Meetings Search · flonat
    Search meeting transcripts and voice memos for people, topics, decisions, commitments, or remembered ideas. Use when the user asks what was discussed, decided, or said across their meeting history. Not for preparing an upcoming meeting; use $meetings-prep.
    1 install
  33. Meetings Weekly · flonat
    Weekly meeting synthesis — themes, decision arcs, stale commitments, and what deserves your attention next week. Use when the user says "weekly review", "what happened this week", "weekly summary", "recap my week", "any outstanding items", "week in review", or at the end of a work week.
    1 install
  34. Numerical Check · flonat
    Numerically stress-test a self-authored mathematical claim over its parameter space to seek counterexamples or characterize violations. Use when checking monotonicity, thresholds, inequalities, comparative statics, or limits computationally. For algebraic proof or Lean formalization, use $symbolic-check or $lean-check.
    1 install
  35. Review Response · flonat bundle
    Systematic reviewer response workflow: parse comments, classify by severity, develop response strategy, write structured rebuttal. Use when asked to 'write rebuttal', 'respond to reviewers', 'draft review response', or 'handle R&R'.
    1 install
  36. Skill Preflight · flonat
    Deliver a pre-flight duplicate check before creating new skills or agents. Use when the user requests a pre-flight duplicate check before creating new skills or agents.
    1 install
  37. Task Management · flonat
    Query and update recorded planning and research portfolio state across tasks, topics, papers, outputs, submissions, venues, people, institutions, and deadlines. Use when asking what is already recorded, including institution- or venue-associated topics, or when doing daily planning and weekly review. For venue suitability recommendations, inspect recorded state first and then use the venue-recommendation workflow.
    1 install
  38. Code Archaeology · flonat
    Recover the structure, intent, and lineage of old code, data, or analysis files. Use when inherited or dormant research code must be understood before it is changed. Not for a quality review of already-understood code.
    1 install
  39. Docs Consistency · flonat
    Review user-facing documentation for accuracy, consistency, and completeness across private, public, nested repos, and the user manual. Use when docs feel stale, after major changes, or before sharing. (Replaces `repo-doc-audit`)
    1 install
  40. Meetings Cleanup · flonat
    Manage old recordings — find large files, archive old meetings, delete processed originals. Use when the user says "clean up recordings", "how much space are meetings using", "delete old recordings", "archive meetings", "manage meeting storage", or asks about disk space from minutes.
    1 install
  41. Meetings Debrief · flonat
    Post-meeting debrief — analyzes what happened, compares outcomes to your prep intentions, tracks decision evolution. Use when the user says "debrief", "what just happened in that meeting", "what did we decide", "debrief that call", "post-meeting", "what changed", or right after stopping a recording.
    1 install
  42. Pre Commit Audit · flonat bundle
    Deliver a fast pre-commit safety scan: file size, anonymity (author / affiliation strings in tex/bib), hardcoded secrets, and invisible-Unicode carriers. Use when the user requests a fast pre-commit safety scan: file size, anonymity (author / affiliation strings in tex/bib), hardcoded secrets, and invisible-Unicode carriers. Triggers: 'audit before commit', 'check before push', 'pre-commit scan', 'safety check'.
    1 install
  43. Voice Editor · flonat bundle
    Edit draft or auto-generated prose to match an existing personal voice profile. Use when transforming generic text into the profiled author's wording, cadence, and style. Not for creating the profile or matching a journal; use $voice-analyzer or $journal-voice.
    1 install
  44. Causal Design · flonat bundle
    Design or audit the identification strategy for an observational study. Use when the task concerns estimands, causal assumptions, threats to identification, or defensible research design rather than model implementation.
    1 install
  45. Data Analysis · flonat bundle
    Deliver an end-to-end analysis pipeline: EDA, estimation, or publication output. Use when the user requests an end-to-end analysis pipeline: EDA, estimation, or publication output.
    1 install
  46. Insights Deck · flonat
    Archive an exported Claude Code insights HTML report and turn it into a timestamped Beamer presentation usable from either client. Use when the insights export is the source artifact for a presentation. Not for a general research talk; use $talk-deck.
    1 install
  47. Latex Posters · flonat bundle
    Create a large-format academic poster in LaTeX using beamerposter, tikzposter, or baposter. Use when the requested deliverable is a conference or research poster rather than sequential presentation slides. For slide decks, use $beamer-deck.
    1 install
  48. Meetings List · flonat
    List recent meetings and voice memos. Use when the user asks "what meetings did I have", "show my recent recordings", "any meetings today", "list my voice memos", or wants an overview of their meeting history. Also use when they need to find a specific meeting by browsing rather than searching.
    1 install
  49. Meetings Prep · flonat
    Interactive meeting preparation — builds a relationship brief and talking points before a call. Use when the user says "prep me for my call with", "I'm meeting with X", "prepare me for", "what should I bring up with", "meeting prep", "get ready for my call", or wants to review history with someone before a meeting.
    1 install
  50. Skill Creator · flonat bundle
    Create, revise, and evaluate reusable AI workflow skills, including trigger-quality tests. Use when authoring a new skill, repairing an existing skill, or measuring whether its metadata routes correctly.
    1 install
  51. Skill Extract · flonat bundle
    Extract reusable knowledge from the current session into a persistent skill. Use when you discover something non-obvious, create a workaround, or develop a multi-step workflow that future sessions would benefit from.
    1 install
  52. Knowledge Lint · flonat
    Lint an existing project knowledge base for contradictions, uncited claims, missing connections, stale articles, and orphaned concepts. Use when checking the integrity of already compiled knowledge before relying on or expanding it. Not for compiling raw sources; use $compile-knowledge.
    1 install
  53. Latex Scaffold · flonat
    Convert an existing Markdown manuscript draft into a buildable LaTeX project with canonical structure and build configuration. Use when prose already exists but no LaTeX source tree does. Not for checking template drift in an existing project; use $latex-template.
    1 install
  54. Latex Template · flonat bundle
    Compare a project's LaTeX preamble and conventions against the canonical working-paper template. Use when diagnosing template drift without converting venue formats or editing prose.
    1 install
  55. Meetings Recap · flonat bundle
    Generate a daily digest of today's meetings and voice memos — key decisions, action items, and themes across all recordings. Use when the user asks "recap my day", "what happened in my meetings today", "daily summary", "what did I discuss today", "any action items from today", or wants a consolidated view of the day's conversations.
    1 install
  56. Playwright CLI · flonat bundle
    Automate browser interactions and inspect or test web pages through Playwright commands. Use when the task requires deterministic browser navigation, screenshots, selectors, or Playwright-test work. For a full local-webapp test workflow, use $webapp-testing.
    1 install
  57. Project Safety · flonat
    Install or reconcile research-project safety rules and protected folder boundaries for data, code, outputs, and paper sources. Use when a project lacks guardrails or is being migrated into the governed structure. Not for auditing the full research scaffold; use $audit-project-research.
    1 install
  58. Postmortem · flonat
    Deliver a structured post-mortem after incidents, mistakes, or stuck sessions. Use when the user requests a structured post-mortem after incidents, mistakes, or stuck sessions.
    1 install
  59. Python Env · flonat
    Create and maintain Python environments and dependencies with uv. Use when installing packages, creating a virtual environment, resolving Python dependency state, or migrating away from pip. Not for general Python coding.
    1 install
  60. Venue Fork · flonat
    Fork an existing paper into a concurrent second-venue submission variant with policy checks, separate Overleaf ownership, format conversion, budget refit, QA, and Atlas/Vault writeback. Use when submitting the same work concurrently to another permitted venue. Not for preprints, ordinary retargeting, or camera-ready work.
    1 install
  61. Wiki Merge · flonat
    Merge an overlap cluster of Vault concepts into one canonical concept, rewrite wikilinks, and preserve a dry-run/apply boundary. Use when $wiki-curate has identified a winner and fold-in slugs. Not for general wiki auditing or automatic article promotion.
    1 install
  62. Beamer Deck · flonat bundle
    Create an academic presentation as a LaTeX Beamer source and reviewed PDF with an original theme. Use when the requested deliverable is a conference, seminar, or lecture deck in Beamer. Not for PowerPoint or RevealJS; use $pptx or $quarto-deck.
    1 install
  63. MCP Builder · flonat bundle
    Guide for creating MCP servers that enable LLMs to interact with external services through well-designed tools. Use when building MCP servers to integrate external APIs or services, whether in Python (FastMCP) or Node/TypeScript (MCP SDK).
    1 install
  64. Quarto Deck · flonat bundle
    Generate a Reveal.js HTML presentation from Markdown. Use when the user asks to generate a Reveal.js HTML presentation from Markdown.
    1 install
  65. Session Log · flonat
    Create a timestamped research-session progress log that records completed work, evidence, decisions, and next steps. Use when closing or checkpointing substantive project work that needs a durable chronology. Not for saving one reusable finding; use $store-insight.
    1 install
  66. Verify Math · flonat bundle
    Verify a self-authored mathematical result end to end by routing claims across adversarial review, numerical falsification, symbolic or CAS checks, and Lean, then aggregating one report. Use when a theorem, proposition, conjecture, or paper-wide mathematical argument needs the appropriate combination of verification methods. For one known method, use $numerical-check, $symbolic-check, or $lean-check directly.
    1 install
  67. Wiki Curate · flonat
    Audit the Research Vault concept wiki read-only for fragmentation, missing tags, write-only concepts, and draft or anatomy conformance, producing a Markdown report. Use when assessing wiki quality before maintenance. Not for promoting or merging concepts; use $wiki-grow or $wiki-merge.
    1 install
  68. Bib Coverage · flonat
    Compare a project .bib against a Paperpile project/topic folder to find uncited papers or unfiled entries. Use when the user asks to compare a project .bib against a Paperpile project/topic folder to find uncited papers or unfiled entries.
    1 install
  69. Camera Ready · flonat
    Convert an accepted anonymous-submission LaTeX paper (AAAI/AIES/ACM-style) to camera-ready and implement the accepted reviews. Use when a paper is accepted with no rebuttal and you need to de-anonymize, add copyright, turn on section numbering, implement each reviewer's minor revisions, optionally move proofs to a non-counted appendix, and QA. Not for R&R/revise-and-resubmit (use strategic-revision --external) or for preprints (use preprint).
    1 install
  70. Init Project · flonat
    Bootstrap a new research project. Interview for details, scaffold directory structure, create Overleaf symlink, initialise git, and create project context files.
    1 install
  71. Interview Me · flonat
    Conduct an adaptive structured interview that elicits tacit knowledge, requirements, preferences, or decisions and summarizes them explicitly. Use when the needed information is in the user's head and cannot be recovered from project files. Not for adversarial oral examination; use $grill-me.
    1 install
  72. Latex Polish · flonat bundle
    Inspect a cleanly compiling LaTeX document for source pathologies and rendered visual defects by linting and viewing selected PDF pages. Use when compilation succeeds but title pages, floats, tables, figures, or layout still need publication-quality review. Not for basic compilation health; use $latex-health-check.
    1 install
  73. Method Audit · flonat
    Extract and compare data-collection methods across a set of empirical papers. Use when the user needs a cross-paper methods matrix or wants to assess how a literature gathers evidence.
    1 install
  74. Project Deck · flonat
    Create a concise presentation deck that communicates a project's current state, decisions, evidence, risks, and next steps. Use when preparing a project update for collaborators, supervisors, or stakeholders. Not for a research talk centered on one paper; use $talk-deck.
    1 install
  75. Update Focus · flonat
    Update current-focus.md with a structured session summary. Use when the user asks to update current-focus.md with a structured session summary.
    1 install
  76. PDF · flonat bundle
    Read, create, combine, split, rotate, OCR, watermark, secure, or extract content from PDF files. Use when a PDF is a primary input or requested output. Not for LaTeX source editing or Word and spreadsheet deliverables.
    1 install
  77. DOCX · flonat bundle
    Create, read, edit, or convert Microsoft Word documents while preserving professional document structure. Use when a .docx file is a primary input or requested output, including tracked changes, comments, images, headings, page furniture, or polished reports and letters. Not for PDFs, spreadsheets, Google Docs, or unrelated coding tasks.
    1 install
  78. Tikz · flonat bundle
    Diagnose and fix residual TikZ label, arrow, box, and Bézier-path collisions with geometric calculations. Use when a generated .tex figure has overlapping labels or crossed arrows. Not for generating a new figure; use $figure or the upstream deck workflow.
    1 install
  79. XLSX · flonat bundle
    Create, read, edit, clean, format, chart, or convert spreadsheet files while preserving spreadsheet-native deliverables. Use when .xlsx, .xlsm, .csv, or .tsv data is the primary input or a spreadsheet is the requested output. Not for Word documents, HTML reports, standalone scripts, database pipelines, or Google Sheets API work.
    1 install
  80. Ideas · flonat
    Capture and integrate improvement ideas for the shared Claude Code and Codex infrastructure. Use when recording an infrastructure enhancement for later review rather than implementing it immediately.
    1 install
  81. Latex · flonat bundle
    Compile one specified LaTeX document, resolve build errors, audit citations, and report build quality. Use when a .tex source must be built or a concrete compilation failure repaired. Not for corpus-wide build checks, visual polish after a clean build, or creating a project; use $latex-health-check, $latex-polish, or $latex-scaffold.
    1 install
  82. Reorg · flonat
    Propose and, after approval, execute content-aware file reorganization or deduplication using a local Mac Mini model with a reversible undo record. Use when sorting a folder by file contents or finding exact and near duplicates. Always dry-runs first.
    1 install
  83. Handoff · flonat bundle
    Create, accept, or update the persistent `.context/ai-handoff.md` state shared by AI sessions and machines. Use when continuing in a new Claude or Codex session, transferring work between clients, or recording ownership and restart state.
    1 install
  84. Grill Me · flonat
    Run an interactive one-question-at-a-time oral drill for research defence or active-recall study, escalating around weak answers and ending with a study sheet. Use when the user asks to be grilled, quizzed, or prepared for a viva, job talk, seminar, or exam. Not for a written critique; use $devils-advocate or a review agent.
    1 install
  85. Bib Parse · flonat
    Extract citations from a PDF and generate a validated .bib file. Use when the user asks to extract citations from a PDF and generate a validated .bib file. Reads the PDF, identifies referenced works, constructs BibTeX entries, and verifies metadata.
    1 install
  86. Proofread · flonat bundle
    Proofread a LaTeX academic paper across eleven language, notation, citation, and consistency categories. Use when the requested task is bounded proofreading rather than substantive rewriting, clarity stress-testing, or venue compliance.
    1 install
  87. Split PDF · flonat bundle
    Download, split, and deeply read an academic PDF that is not available through Paperpile. Use when a long external PDF needs page-wise ingestion. For Paperpile items, use the Paperpile text-extraction route instead.
    1 install
  88. Wiki Grow · flonat
    Auto-promote eligible project knowledge articles into Research Vault concepts with generated provenance metadata. Use when running the scheduled knowledge-corpus promotion or previewing candidates interactively. Not for consolidating overlapping concepts; use $wiki-merge.
    1 install
  89. Bib Filter · flonat
    Filter a LaTeX project's bibliography to the entries actually cited, with Overleaf-source resolution, temporary staging, validation, approval-gated canonical replacement, and compilation. Use before submission or after large revisions.
    1 install
  90. Checkpoint · flonat
    Save a compact continuation checkpoint so current work survives context compaction or a later session. Use when the active context is becoming long or work must pause without changing client or machine ownership. For an explicit cross-session/client transfer, use $handoff.
    1 install
  91. Latex Diff · flonat
    Compare two LaTeX files, project directories, or Git revisions and produce human-readable plus machine-readable severity-graded semantic changes. Use when determining what changed between manuscript versions or preparing a revision audit bundle. Not for proofreading one version; use $proofread.
    1 install
  92. Lean Check · flonat
    Formalize a self-authored lemma or theorem in Lean 4/mathlib and require a clean `lake build` without `sorry`. Use when the mathematical claim can be stated faithfully and machine-checked. For numerical falsification or symbolic algebra, use $numerical-check or $symbolic-check.
    1 install
  93. Math Proof · flonat
    Write clear, detailed mathematical proofs for academic papers. Use when the user asks to prove a result, derive an equation, justify a claim analytically, or expand a proof sketch into a full proof. Also trigger on "prove", "show analytically", "derive", "justify mathematically", or "write a proof".
    1 install