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gabrielmoreira

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• 21k skills
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• 17 repo stars
• 2 weeks ago last updated

1. ▌
   Shopify Observability · gabrielmoreira bundle

   Set up observability for Shopify app integrations with query cost tracking, rate limit monitoring, webhook delivery metrics, and structured logging. Use when instrumenting a Shopify app for production monitoring, setting up Prometheus metrics for API health, or configuring alerts for rate limit issues. Trigger with phrases like "shopify monitoring", "shopify metrics", "shopify observability", "monitor shopify API", "shopify alerts", "shopify dashboard".
   17 repo stars
2. ▌
   Speak Core Workflow A · gabrielmoreira bundle

   Execute Speak primary workflow: AI Conversation Practice with real-time feedback. Use when implementing conversation practice features, building AI tutor interactions, or core language learning dialogue systems. Trigger with phrases like "speak conversation practice", "speak AI tutor", "speak dialogue", "primary speak workflow".
   17 repo stars
3. ▌
   Speak Core Workflow B · gabrielmoreira bundle

   Execute Speak secondary workflow: Pronunciation Training with phoneme-level analysis. Use when implementing pronunciation drills, speech scoring, or targeted pronunciation improvement features. Trigger with phrases like "speak pronunciation training", "speak speech scoring", "speak phoneme analysis".
   17 repo stars
4. ▌
   Speak Enterprise Rbac · gabrielmoreira bundle

   Configure Speak for schools and organizations: SSO, teacher/student roles, class management, and usage reporting. Use when implementing enterprise rbac, or managing Speak language learning platform operations. Trigger with phrases like "speak enterprise rbac", "speak enterprise rbac".
   17 repo stars
5. ▌
   Speak Multi Env Setup · gabrielmoreira bundle

   Configure Speak across dev, staging, and production with separate API keys and mock modes. Use when implementing multi env setup, or managing Speak language learning platform operations. Trigger with phrases like "speak multi env setup", "speak multi env setup".
   17 repo stars
6. ▌
   Speak Security Basics · gabrielmoreira bundle

   Security best practices for Speak API keys, audio data privacy, student data protection, and COPPA/FERPA compliance. Use when implementing security basics features, or troubleshooting Speak language learning integration issues. Trigger with phrases like "speak security basics", "speak security basics".
   17 repo stars
7. ▌
   Speak Webhooks Events · gabrielmoreira bundle

   Handle Speak lesson completion events, progress webhooks, and achievement notifications. Use when implementing webhooks events, or managing Speak language learning platform operations. Trigger with phrases like "speak webhooks events", "speak webhooks events".
   17 repo stars
8. ▌
   Supabase Debug Bundle · gabrielmoreira bundle

   Collect Supabase diagnostic info for troubleshooting and support tickets. Use when debugging connection failures, auth issues, Realtime drops, Storage errors, RLS misconfigurations, or preparing a support escalation. Trigger: "supabase debug", "supabase diagnostics", "supabase support bundle", "collect supabase logs", "debug supabase connection".
   17 repo stars
9. ▌
   Supabase Install Auth · gabrielmoreira bundle

   Install and configure Supabase SDK, CLI, and project authentication. Use when setting up a new Supabase project, installing @supabase/supabase-js, configuring environment variables, or initializing the Supabase client. Trigger with "install supabase", "setup supabase", "supabase auth config", "configure supabase", "supabase init", "add supabase to project".
   17 repo stars
10. ▌
    Supabase Sdk Patterns · gabrielmoreira bundle

    Use when implementing Supabase queries, auth, realtime, storage, or RPC calls with @supabase/supabase-js or supabase-py and you need production-ready, type-safe patterns that always check the { data, error } contract. Trigger with phrases like "supabase SDK patterns", "supabase query", "supabase typescript", "supabase python", "supabase client setup", "supabase realtime", "supabase auth", "supabase storage".
    17 repo stars
11. ▌
    Techsmith Hello World · gabrielmoreira

    Capture a screenshot with Snagit COM API and produce a Camtasia video. Use when automating screen captures, batch-processing recordings, or building documentation pipelines with TechSmith tools. Trigger: "techsmith hello world, snagit capture, camtasia render".
    17 repo stars
12. ▌
    Together Install Auth · gabrielmoreira

    Install Together AI SDK and configure API key for inference and fine-tuning. Use when setting up Together AI, configuring the OpenAI-compatible API, or initializing the together Python package. Trigger: "install together, setup together ai, together API key".
    17 repo stars
13. ▌
    Twinmind Debug Bundle · gabrielmoreira

    Collect comprehensive diagnostic information for TwinMind issues. Use when preparing support requests, investigating complex problems, or gathering evidence for bug reports. Trigger with phrases like "twinmind debug", "twinmind diagnostics", "collect twinmind info", "twinmind support bundle".
    17 repo stars
14. ▌
    Twinmind Install Auth · gabrielmoreira

    Install and configure TwinMind Chrome extension, mobile app, and API access. Use when setting up TwinMind for meeting transcription, configuring calendar integration, or initializing TwinMind in your workflow. Trigger with phrases like "install twinmind", "setup twinmind", "twinmind auth", "configure twinmind", "twinmind chrome extension".
    17 repo stars
15. ▌
    Twinmind Sdk Patterns · gabrielmoreira

    Apply production-ready TwinMind SDK patterns for TypeScript and Python. Use when implementing TwinMind integrations, refactoring API usage, or establishing team coding standards for meeting AI integration. Trigger with phrases like "twinmind SDK patterns", "twinmind best practices", "twinmind code patterns", "idiomatic twinmind".
    17 repo stars
16. ▌
    Vastai CI Integration · gabrielmoreira

    Configure Vast.ai CI/CD integration with GitHub Actions and automated GPU testing. Use when setting up automated testing on GPU instances, or integrating Vast.ai provisioning into CI/CD pipelines. Trigger with phrases like "vastai CI", "vastai github actions", "vastai automated testing", "vastai pipeline".
    17 repo stars
17. ▌
    Vastai Local Dev Loop · gabrielmoreira

    Configure Vast.ai local development with testing and fast iteration. Use when setting up a development environment, testing instance provisioning, or building a fast iteration cycle for GPU workloads. Trigger with phrases like "vastai dev setup", "vastai local development", "vastai dev environment", "develop with vastai".
    17 repo stars
18. ▌
    Vastai Prod Checklist · gabrielmoreira

    Execute Vast.ai production deployment checklist for GPU workloads. Use when deploying training pipelines to production, preparing for large-scale GPU jobs, or auditing production readiness. Trigger with phrases like "vastai production", "deploy vastai", "vastai go-live", "vastai launch checklist".
    17 repo stars
19. ▌
    Vercel CI Integration · gabrielmoreira bundle

    Configure Vercel CI/CD with GitHub Actions, preview deployments, and automated testing. Use when setting up automated deployments, configuring preview bots, or integrating Vercel into your CI pipeline. Trigger with phrases like "vercel CI", "vercel GitHub Actions", "vercel automated deploy", "CI vercel", "vercel pipeline".
    17 repo stars
20. ▌
    Vercel Deploy Preview · gabrielmoreira

    Create and manage Vercel preview deployments for branches and pull requests. Use when deploying a preview for a pull request, testing changes before production, or sharing preview URLs with stakeholders. Trigger with phrases like "vercel deploy preview", "vercel preview URL", "create preview deployment", "vercel PR preview".
    17 repo stars
21. ▌
    Vercel Known Pitfalls · gabrielmoreira bundle

    Identify and avoid Vercel anti-patterns and common integration mistakes. Use when reviewing Vercel code for issues, onboarding new developers, or auditing existing Vercel deployments for best practice violations. Trigger with phrases like "vercel mistakes", "vercel anti-patterns", "vercel pitfalls", "vercel what not to do", "vercel code review".
    17 repo stars
22. ▌
    Vercel Local Dev Loop · gabrielmoreira bundle

    Configure Vercel local development with vercel dev, environment variables, and hot reload. Use when setting up a development environment, testing serverless functions locally, or establishing a fast iteration cycle with Vercel. Trigger with phrases like "vercel dev setup", "vercel local development", "vercel dev environment", "develop with vercel locally".
    17 repo stars
23. ▌
    Vercel Prod Checklist · gabrielmoreira bundle

    Vercel production deployment checklist with rollback and promotion procedures. Use when deploying to production, preparing for launch, or implementing go-live and instant rollback procedures. Trigger with phrases like "vercel production", "deploy vercel prod", "vercel go-live", "vercel launch checklist", "vercel promote".
    17 repo stars
24. ▌
    Webflow Common Errors · gabrielmoreira

    Diagnose and fix Webflow Data API v2 errors — 400, 401, 403, 404, 409, 429, 500. Use when encountering Webflow API errors, debugging failed requests, or troubleshooting integration issues. Trigger with phrases like "webflow error", "fix webflow", "webflow not working", "debug webflow", "webflow 429", "webflow 401".
    17 repo stars
25. ▌
    Windsurf Code Privacy · gabrielmoreira bundle

    Configure code privacy and data retention policies. Activate when users mention "code privacy", "data retention", "privacy settings", "data governance", or "gdpr compliance". Handles privacy and data protection configuration. Use when working with windsurf code privacy functionality. Trigger with phrases like "windsurf code privacy", "windsurf privacy", "windsurf".
    17 repo stars
26. ▌
    Windsurf Debug Bundle · gabrielmoreira

    Collect Windsurf diagnostic information for troubleshooting and support tickets. Use when encountering persistent issues, preparing support tickets, or collecting diagnostic data for Windsurf problems. Trigger with phrases like "windsurf debug", "windsurf support", "windsurf diagnostic", "windsurf logs", "windsurf not working".
    17 repo stars
27. ▌
    Windsurf Debugging AI · gabrielmoreira bundle

    Execute use Cascade for intelligent debugging and error analysis. Activate when users mention "debug with ai", "error analysis", "cascade debug", "find bug", or "troubleshoot code". Handles AI-assisted debugging workflows. Use when debugging issues or troubleshooting. Trigger with phrases like "windsurf debugging ai", "windsurf ai", "windsurf".
    17 repo stars
28. ▌
    Windsurf Install Auth · gabrielmoreira

    Install Windsurf IDE and configure Codeium authentication. Use when setting up Windsurf for the first time, logging in to Codeium, or configuring API keys for team/enterprise deployments. Trigger with phrases like "install windsurf", "setup windsurf", "windsurf auth", "codeium login", "windsurf API key".
    17 repo stars
29. ▌
    Windsurf Sdk Patterns · gabrielmoreira

    Apply production-ready Windsurf workspace configuration and Cascade interaction patterns. Use when configuring .windsurfrules, workspace rules, MCP servers, or establishing team coding standards for Windsurf AI. Trigger with phrases like "windsurf patterns", "windsurf best practices", "windsurf config patterns", "windsurfrules", "windsurf workspace".
    17 repo stars
30. ▌
    Workhuman Cost Tuning · gabrielmoreira

    Workhuman cost tuning for employee recognition and rewards API. Use when integrating Workhuman Social Recognition, or building recognition workflows with HRIS systems. Trigger: "workhuman cost tuning".
    17 repo stars
31. ▌
    Workhuman Hello World · gabrielmoreira

    Workhuman hello world for employee recognition and rewards API. Use when integrating Workhuman Social Recognition, or building recognition workflows with HRIS systems. Trigger: "workhuman hello world".
    17 repo stars
32. ▌
    Sns Topic Config · gabrielmoreira

    Configure sns topic config operations. Auto-activating skill for AWS Skills. Triggers on: sns topic config, sns topic config Part of the AWS Skills skill category. Use when configuring systems or services. Trigger with phrases like "sns topic config", "sns config", "sns".
    17 repo stars
33. ▌
    Plan Cartonization · gabrielmoreira bundle

    Plan cartonization from item dimensions, weights, order mix, carton set, packing rules, and shipment constraints.
    17 repo stars
34. ▌
    Run Gauss · gabrielmoreira

    Acts as a knowledge base providing environment checklists, directory/scratch management, and bash command templates. USE WHEN you need to guide the execution of Gaussian computational chemistry jobs (.gjf) on local or remote/HPC environments.
    17 repo stars
35. ▌
    Perspectival Constellation · gabrielmoreira

    Structure multi-POV stories through catalyst environments. Use when building interconnected narratives, when perspectives need meaningful intersection, or when a shared setting needs to generate distinct storylines.
    17 repo stars
36. ▌
    Systemic Worldbuilding · gabrielmoreira

    Build worlds through cascading consequences from speculative changes. Use when introducing new technologies, species, or alternate histories and need to trace realistic societal transformations across multiple domains.
    17 repo stars
37. ▌
    Analyse Dpa Fournisseur Hugo Salard · gabrielmoreira bundle

    Analyse systématique d'un Data Processing Agreement (DPA) au regard de l'article 28 RGPD, des lignes directrices EDPB 07/2020 et 02/2024, des CCT 2021 (décision d'exécution 2021/914), des recommandations EDPB 01/2020 (mesures supplémentaires post-Schrems II), et du Règlement (UE) 2024/1689 (Règlement IA). Produit un rapport structuré clause par clause (18 clauses : 13 obligatoires + 5 complémentaires) avec diagnostic 🟢/🟡/🔴, remédiations prêtes à insérer, analyse détaillée des transferts internationaux, vérification Règlement IA, et questions à poser au fournisseur. Triggers : "analyse de DPA", "audit DPA", "vérifier un DPA", "DPA fournisseur", "data processing agreement", "art. 28 RGPD", "sous-traitant RGPD", "négociation DPA", "review DPA", "conformité contrat sous-traitance".
    17 repo stars
38. ▌
    Legal Translation · gabrielmoreira bundle

    Translate legal documents from any language into English while preserving .docx formatting and translating track changes and headers/footers. Use this skill whenever the user asks to translate a legal document, contract, deed, agreement, or any formal legal text into English. Also trigger when the user mentions translating .docx files that contain legal content, or asks for a "format-preserving translation" of a legal document. This skill covers all legal domains: finance, M&A, corporate, IP, real estate, regulatory, consumer, taxes, litigation, SaaS and more. Even if the user just says "translate this contract" or "translate this into English", use this skill if the document is legal in nature.
    17 repo stars
39. ▌
    Knowledge Distillation · gabrielmoreira

    Compile one or more OpenViking knowledge bases or document collections into topic-organized, evidence-grounded high-level knowledge, including cross-source findings, trends, changes, drivers, comparisons, implications, and uncertainties. Use with ov compile when the user asks to distill or synthesize a knowledge base, compare multiple collections, or derive higher-order insights such as changes across financial reports; do not use for document-by-document summaries.
    17 repo stars
40. ▌
    Install Openviking Memory · gabrielmoreira

    Install and configure the OpenViking long-term memory plugin for OpenClaw via natural conversation. Once installed, the plugin automatically captures facts from chats and recalls relevant context before each reply (auto-capture + auto-recall, cross-session). Covers prerequisites, install through OpenClaw's plugin manager (ov-install as backup), wizard-based configuration, slot activation, gateway restart, verification, multi-tenant root keys, multi-instance and uninstall. The user needs no CLI knowledge — the agent runs everything and only asks for a few values. Assumes the OpenViking server is already running; it does NOT install the server. Trigger on: "install OpenViking", "set up memory", "configure memory plugin", "add long-term memory", "semantic memory", "RAG", "帮我装 OpenViking", "配置记忆插件", "安装记忆功能", "接入 OpenViking".
    17 repo stars
41. ▌
    Raise Pull Requests · gabrielmoreira

    Raise high-quality pull requests that are easy to review, provide clear context, and follow team conventions. Use when a user asks to open, write, prepare, or submit a pull request. Covers PR sizing, self-review, writing descriptions, submitting PRs, responding to review feedback, and reviewing others' PRs. Follows GitHub best practices for collaboration and code review.
    17 repo stars
42. ▌
    Openapi Spec Generation · gabrielmoreira

    Generate and maintain OpenAPI 3.1 specifications from code, design-first specs, and validation patterns. Use when creating API documentation, generating SDKs, or ensuring API contract compliance.
    17 repo stars
43. ▌
    Modern Javascript Patterns · gabrielmoreira

    Master ES6+ features including async/await, destructuring, spread operators, arrow functions, promises, modules, iterators, generators, and functional programming patterns for writing clean, efficient JavaScript code. Use when refactoring legacy code, implementing modern patterns, or optimizing JavaScript applications.
    17 repo stars
44. ▌
    Hybrid Search Implementation · gabrielmoreira

    Combine vector and keyword search for improved retrieval. Use when implementing RAG systems, building search engines, or when neither approach alone provides sufficient recall.
    17 repo stars
45. ▌
    Meta Harness Proteus · gabrielmoreira

    Run one iteration of proteus memory-summary evolution. Called by meta_harness.py.
    17 repo stars
46. ▌
    Message System Architect · gabrielmoreira

    Use when the user asks to "author our durable brand message hierarchy", "build the brand message house that seeds the canon", or "define the main narrative, three pillars, and tagline for the whole brand"; produces the DURABLE brand message system — main narrative, three value pillars, per-persona proof points (each labeled Measured / User-provided / '[needs source]'), and the tagline/one-liner — that seeds the narrative-registry canon and from which every per-launch house derives. Not for a single launch's message house or PR-FAQ — use message-house-builder; not for claim adjudication — use offer-claims-registry; not for the change-narrative arc itself — use strategic-narrative-designer. 品牌消息屋/主叙事/三支柱/标语/持久叙事 canon
    17 repo stars
47. ▌
    Narrative Quality Auditor · gabrielmoreira

    Use when the user asks to "audit our brand narrative" or "is this message on-canon"; runs separate typed TALE truth, system, or effectiveness profiles and never averages them into one composite. Checks differentiation, canon, landing consistency, and evidence integrity. Not for launch readiness — use launch-readiness-auditor; not for social operations — use social-quality-auditor. 品牌叙事分层审计/发布前一致性放行
    17 repo stars
48. ▌
    Method Writing · gabrielmoreira

    Write and revise the Methods section of research papers to ensure reproducibility; use when preparing an IMRAD manuscript or responding to journal/reporting-guideline requirements (e.g., CONSORT/STROBE/PRISMA).
    17 repo stars
49. ▌
    Singlecell Portal · gabrielmoreira

    Programmatically query public single-cell study metadata from the Broad Institute Single Cell Portal REST API when you need to search and filter datasets by organism, tissue, disease, or cell type without an API key.
    17 repo stars
50. ▌
    Torchdrug English · gabrielmoreira

    PyTorch-native Graph Neural Network framework for molecules and proteins. Suitable for building custom GNN architectures for drug discovery, protein modeling, or knowledge graph reasoning. Best for custom model development, protein property prediction, and retrosynthesis. If you need pretrained models and diverse feature extractors, use deepchem; if you need benchmark datasets, use pytdc.
    17 repo stars
51. ▌
    Arxiv Database · gabrielmoreira

    Search and retrieve scientific preprints from arXiv; use it when you need to find papers by keyword/author/category, fetch metadata (abstract, DOI, PDF URL), or download PDFs for offline reading.
    17 repo stars
52. ▌
    Journal Skills · gabrielmoreira

    Recommends target journals for manuscript submission by analyzing the paper topic/abstract and the journal distribution of similar PubMed literature; use when users ask for journal recommendation/matching, submission strategy, PubMed search, or similar-literature statistics.
    17 repo stars
53. ▌
    Reactome Skill · gabrielmoreira

    Query the Reactome REST API for pathway content and enrichment analyses; use when you need curated pathway data, reaction details, or overrepresentation results for a gene list.
    17 repo stars
54. ▌
    Scite Database · gabrielmoreira

    Access Scite.ai Smart Citations to classify how a paper is cited (supporting, contrasting, mentioning) and assess scientific claims; use it when you need to evaluate a paper’s reliability or its acceptance in the literature.
    17 repo stars
55. ▌
    Academic Poster Generator · gabrielmoreira

    Complete workflow for generating academic research posters from PDF literature; use when you need to extract paper content from PDFs and produce a LaTeX-based poster (beamerposter/tikzposter/baposter) with mandatory figure generation and a final rendered HTML deliverable.
    17 repo stars
56. ▌
    Article Format Adjustment · gabrielmoreira

    Adjust academic paper formatting and convert between DOCX/LaTeX/Markdown when you need to meet a journal or school template requirement.
    17 repo stars
57. ▌
    Equipment Maintenance Log · gabrielmoreira

    Track lab equipment calibration dates and send maintenance reminders for pipettes, balances, centrifuges, and other instruments. Validates date formats and supports update/delete operations.
    17 repo stars
58. ▌
    Lab Result Interpretation · gabrielmoreira

    Transforms biochemical lab test results into clear, patient-friendly explanations. Covers blood routine, lipid panel, liver/kidney function, thyroid, electrolytes, and inflammation markers. Flags critical values, classifies severity, and generates structured interpretation rep...
    17 repo stars
59. ▌
    Medication Reconciliation · gabrielmoreira

    Compare patient pre-admission medication lists with inpatient orders to automatically identify omitted or duplicated medications and improve medication safety.
    17 repo stars
60. ▌
    Meeting Minutes Generator · gabrielmoreira

    Generates structured meeting minutes from text transcripts. Use when the user provides text content and wants a structured summary with a signature.
    17 repo stars
61. ▌
    Shift Handover Summarizer · gabrielmoreira

    Generate structured shift handover summaries from EHR records, highlighting critical events, vital sign changes, and pending tasks for incoming clinical staff.
    17 repo stars
62. ▌
    Text To Technical Roadmap · gabrielmoreira

    Converts research text into a Mermaid technical roadmap flowchart. Use when the user provides research proposals, experiment designs, or scientific text and asks for a roadmap or flowchart.
    17 repo stars
63. ▌
    Cinematic Web Experiences · gabrielmoreira

    Build prompts and implementation plans for cinematic websites that use GSAP ScrollTrigger, scroll storytelling, pinned heroes, parallax, Three.js scenes, GLB assets, custom shaders, and premium loading screens. Use when Codex needs to design or prompt a landing page, multi-section microsite, or interactive brand experience with exact motion specs, responsive behavior, fixed-canvas 3D effects, or a repeatable framework for prompt-based site builders.
    17 repo stars
64. ▌
    Digital Avatar Shopping Video · gabrielmoreira bundle

    电商运营与自媒体创作者在需要制作商品推荐或促销带货短视频时，使用此技能可一键生成“小省导购员”数字人口播视频。系统自动协同五大智能体完成脚本、画面与音画合成，产出适配抖音、快手等平台的成品，高效搞定带货视频制作。
    17 repo stars
65. ▌
    Historical Science Video Prod · gabrielmoreira bundle

    自媒体创作者与内容创作者在制作历史科学类3分钟科普短视频时，使用此技能可一键生成包含口播文案、分镜脚本、Veo2提示词及人物规范的全流程素材包，完美适配即梦平台，让视频创作更高效。
    17 repo stars
66. ▌
    AWS Lambda Durable Functions · gabrielmoreira

    Build resilient, long-running, multi-step applications with AWS Lambda durable functions with automatic state persistence, retry logic, and orchestration for long-running executions. Covers the critical replay model, step operations, wait/callback patterns, error handling with saga pattern, testing with LocalDurableTestRunner. Triggers on phrases like: lambda durable functions, workflow orchestration, state machines, retry/checkpoint patterns, long-running stateful Lambda functions, saga pattern, human-in-the-loop callbacks, and reliable serverless applications.
    17 repo stars
67. ▌
    AWS Lambda Managed Instances · gabrielmoreira

    Evaluate, configure, and migrate workloads to AWS Lambda Managed Instances (LMI). Triggers on: Lambda Managed Instances, LMI, capacity provider, multi-concurrency Lambda, dedicated instance Lambda, EC2-backed Lambda, cold start elimination, Graviton Lambda, instance type for Lambda, scheduled scaling for LMI, Lambda cost optimization with Reserved Instances or Savings Plans. Also trigger when users describe high-volume predictable workloads seeking cost savings, want to scale LMI capacity on a schedule, or compare Lambda vs EC2 for steady-state traffic. For standard Lambda without LMI, use the aws-lambda skill instead.
    17 repo stars
68. ▌
    Business Continuity · gabrielmoreira

    Develop business continuity plans and impact analysis. Implement BCP testing and communication procedures. Use when building organizational resilience.
    17 repo stars
69. ▌
    Incident Management · gabrielmoreira

    Implement incident management processes and escalation procedures. Configure on-call schedules and post-incident reviews. Use when managing production incidents.
    17 repo stars
70. ▌
    Iso27001 Compliance · gabrielmoreira

    Implement ISO 27001 Information Security Management System. Configure ISMS controls and risk management. Use when implementing enterprise security frameworks.
    17 repo stars
71. ▌
    Database Backups · gabrielmoreira

    Implement database backup strategies. Configure automated backups, retention, and recovery testing. Use when designing backup and recovery procedures.
    17 repo stars
72. ▌
    Performance Tuning · gabrielmoreira

    Optimize Linux system performance. Configure kernel parameters, analyze bottlenecks, and tune resources. Use when improving system performance.
    17 repo stars
73. ▌
    Imaging Mass Cytometry · gabrielmoreira bundle

    Workflow for multiplexed imaging or IMC segmentation, phenotyping, and spatial summarization.
    17 repo stars
74. ▌
    Sequence And Format Io · gabrielmoreira bundle

    Workflow for foundational sequence parsing, conversion, compression handling, and interval-aware file validation.
    17 repo stars
75. ▌
    Bio Comparative Genomics Ancestral Reconstruction · gabrielmoreira bundle

    Reconstruct ancestral states at internal phylogenetic nodes for sequences (PAML codeml, IQ-TREE --ancestral, GRASP, FastML), discrete traits (corHMM hidden-rate Markov, ape::ace, phytools::make.simmap stochastic mapping, BayesTraits), and continuous traits (phytools::fastAnc, geiger Brownian/OU, RPANDA). Use when designing constructs for ancestral protein resurrection, tracing trait evolution along a tree, performing stochastic character mapping, testing models of trait evolution (BM vs OU vs EB), inferring ancestral genome content via Dollo or DTL reconciliation, or quantifying ancestral-state uncertainty for downstream comparative analyses.
    17 repo stars
76. ▌
    Bio Workflows Causal Genomics Pipeline · gabrielmoreira bundle

    End-to-end post-GWAS causal inference pipeline orchestrating heritability partitioning, genetic correlation, Mendelian randomization with CHP-aware sensitivity (CAUSE / LHC-MR), colocalization, fine-mapping with SuSiE / FOCUS, mediation, TWAS triangulation, cis-pQTL drug-target MR, effector-gene prioritization (L2G / PoPS / cS2G), and GenomicSEM common-factor GWAS. Use when triangulating causal inference across multiple complementary methods, prioritizing tissues via stratified LDSC, nominating or de-risking drug targets, mapping a lead SNP to a candidate effector gene, modeling shared genetic architecture across correlated traits, or producing a STROBE-MR-compliant publication-grade evidence battery from GWAS summary statistics.
    17 repo stars
77. ▌
    Bio Clip Seq Crosslink Site Detection · gabrielmoreira bundle

    Detect single-nucleotide crosslink (CL) sites in CLIP-seq data using truncation patterns (iCLIP/eCLIP CITS), crosslink-induced mutations (HITS-CLIP CIMS deletions, PAR-CLIP T-to-C), or HMM/kernel-density methods (PureCLIP, PARalyzer, CTK). Use when single-nucleotide resolution is required for motif registration (mCross), allele-specific binding (BEAPR), variant-effect prediction, or comparing crosslink chemistry across CLIP variants.
    17 repo stars
78. ▌
    Bio Methylation Differential Cpg · gabrielmoreira bundle

    Per-CpG differential methylation testing from bisulfite sequencing count data or beta-value matrices. Covers beta and M-value computation, coverage filtering, statistical tests (Welch t-test, Mann-Whitney, limma, DSS beta-binomial), multiple testing correction, and effect size calculation. Use when comparing methylation at individual CpG sites between experimental groups from WGBS, RRBS, or targeted bisulfite sequencing.
    17 repo stars
79. ▌
    Bio Pathway Enrichment Visualization · gabrielmoreira bundle

    Visualize enrichment results using enrichplot package functions. Use when creating publication-quality figures from clusterProfiler results. Covers dotplot, barplot, cnetplot, emapplot, gseaplot2, ridgeplot, and treeplot.
    17 repo stars
80. ▌
    Bio Variant Calling Filtering Best Practices · gabrielmoreira bundle

    Comprehensive variant filtering including GATK VQSR, hard filters, bcftools expressions, and quality metric interpretation for SNPs and indels. Use when filtering variants using GATK best practices.
    17 repo stars
81. ▌
    Bio Free Energy Calculations · gabrielmoreira bundle

    Performs alchemical free-energy calculations including relative binding free energy (RBFE / FEP+) and absolute binding free energy (ABFE) via OpenFE, FEP+, GROMACS, AMBER pmemd, and OpenMM with explicit lambda window scheduling, soft-core potentials, REST2 enhanced sampling, MBAR/BAR analysis, and cycle closure validation. Compares ML alternatives (Boltz-2 affinity, DeepDock). Use when ranking analogs by binding affinity beyond docking accuracy, performing prospective lead optimization, or validating SAR predictions.
    17 repo stars
82. ▌
    Bio Workflows Genome Assembly Pipeline · gabrielmoreira bundle

    End-to-end genome assembly workflow from reads to polished assembly with QC. Supports short reads (SPAdes), long reads (Flye), and hybrid approaches. Use when assembling genomes from raw reads.
    17 repo stars
83. ▌
    Bio Systems Biology Metabolic Reconstruction · gabrielmoreira bundle

    Build genome-scale metabolic models from genome sequences using CarveMe and gapseq for automated reconstruction. Generate draft models ready for curation and analysis. Use when creating metabolic models for organisms without existing models.
    17 repo stars
84. ▌
    Bio Single Cell Metabolite Communication · gabrielmoreira bundle

    Analyze metabolite-mediated cell-cell communication using MeboCost for metabolic signaling inference between cell types. Predict metabolite secretion and sensing patterns from scRNA-seq data. Use when studying metabolic crosstalk between cell populations or metabolite-receptor interactions.
    17 repo stars
85. ▌
    Bio Clinical Biostatistics Missing Data · gabrielmoreira bundle

    Implements missing-data sensitivity analyses for confirmatory clinical trials including MMRM under MAR (with Kenward-Roger correction), reference-based multiple imputation (J2R, CR, CIR, LMCF per Carpenter-Roger 2013), Permutt delta-adjustment / tipping-point analysis, pattern-mixture identifying restrictions (CCMV, NCMV, ACMV), and the Cro vs Bartlett variance debate. Use when handling missing primary or secondary endpoint data in regulatory submissions following NRC 2010 and ICH E9(R1).
    17 repo stars
86. ▌
    Bio Workflows Somatic Variant Pipeline · gabrielmoreira bundle

    End-to-end somatic variant calling from tumor-normal paired samples using Mutect2 or Strelka2. Covers preprocessing, variant calling, filtering, and annotation for cancer genomics. Use when calling somatic mutations from tumor-normal pairs.
    17 repo stars
87. ▌
    Bio Comparative Genomics Whole Genome Duplication · gabrielmoreira bundle

    Detect, date, and contextualize whole-genome duplication (WGD / paleopolyploidy) events using wgd v2 (Chen & Zwaenepoel 2024), KsRates (Sensalari 2022 substitution-rate-corrected Ks dating), DupGen_finder (Qiao 2019), MAPS (Li 2018 phylogenomic), POInT (Conant 2008 ordered-block), SLEDGe (2024 ML-based), Whale.jl (Bayesian DTL+WGD), and synteny-anchored paranome construction. Use when identifying ancient polyploidy from Ks distributions and synteny block analysis, positioning WGD events relative to speciation, distinguishing tandem from segmental from WGD duplications, dating the 2R/3R vertebrate / fish / salmonid WGDs, building paranome and Ks-age mixture models, applying KsRates substitution-rate correction across lineages, or testing alternative biased-fractionation / dosage-balance models post-WGD.
    17 repo stars
88. ▌
    Scientific Impact Assessment · gabrielmoreira bundle

    Assess paper and journal impact using OpenAlex citation counts, optional Altmetric data, and curated journal impact-factor references. Use when comparing papers, journals, or literature shortlists by reach and influence.
    17 repo stars
89. ▌
    Alphafold Database Access · gabrielmoreira bundle

    Access AlphaFold DB's 200M+ predicted structures by UniProt ID. Download PDB/mmCIF, analyze pLDDT/PAE, bulk-fetch proteomes via Google Cloud. For experimental structures use PDB; for prediction use ColabFold or ESMFold.
    17 repo stars
90. ▌
    Fastp Fastq Preprocessing · gabrielmoreira

    All-in-one FASTQ QC and adapter trimming. Auto-detects Illumina adapters, filters low-quality reads, corrects paired-end overlaps, emits HTML+JSON QC in one pass. 3-10x faster than Trim Galore/Trimmomatic. First step before STAR, BWA-MEM2, or Salmon.
    17 repo stars
91. ▌
    Matchms Spectral Matching · gabrielmoreira bundle

    MS spectral matching and metabolite ID with matchms. Import spectra (mzML, MGF, MSP, JSON), filter/normalize peaks, score similarity (cosine, modified cosine, fingerprint), build reproducible pipelines, identify unknowns vs spectral libraries. Use pyopenms for full LC-MS/MS proteomics.
    17 repo stars
92. ▌
    Salmon Rna Quantification · gabrielmoreira

    Ultra-fast RNA-seq transcript/gene quantification via quasi-mapping (no BAM). Builds a k-mer index from transcriptome FASTA, quantifies in minutes. Outputs TPM/count tables (quant.sf) with optional GC- and sequence-bias correction. Integrates with tximeta/tximport for DESeq2/edgeR. Use STAR when a genome-aligned BAM is needed.
    17 repo stars
93. ▌
    Shap Model Explainability · gabrielmoreira bundle

    Model interpretability via SHAP (Shapley values from game theory). Covers explainer choice (Tree, Deep, Linear, Kernel, Gradient, Permutation), feature attribution, and plots (waterfall, beeswarm, bar, scatter, force, heatmap). Use to explain ML predictions, rank features, debug models, audit fairness, or compare models. Works with tree, deep, linear, and black-box models.
    17 repo stars
94. ▌
    Snpeff Variant Annotation · gabrielmoreira

    Annotate and filter VCF variants with SnpEff and SnpSift. SnpEff predicts functional effects (HIGH/MODERATE/LOW/MODIFIER), genes, transcripts, AA changes, HGVS; SnpSift filters and adds ClinVar/dbSNP. Java CLI with Python subprocess integration. Use ANNOVAR for multi-database annotation; Ensembl VEP for REST API; SnpEff for fast CLI with pre-built genomes.
    17 repo stars
95. ▌
    Videocut Self Update · gabrielmoreira bundle

    自更新 skills。记录用户反馈，更新方法论和规则。触发词：更新规则、记录反馈、改进skill
    17 repo stars
96. ▌
    Component Flattening Analysis · gabrielmoreira bundle

    Detects misplaced classes and fixes component hierarchy problems — finds code that should belong inside a component but sits at the root level. Use when asking "clean up component structure", "find orphaned classes", "fix module hierarchy", "flatten nested components", or analyzing why namespaces have misplaced code. Do NOT use for dependency analysis (use coupling-analysis) or domain grouping (use domain-identification-grouping).
    17 repo stars
97. ▌
    Coding Agent Sessions · gabrielmoreira bundle

    Finds, reads, and reconstructs coding-agent sessions across Codex, Claude, OpenCode, OMO/Senpi, and other local agent logs. Use when asked to find or search past sessions, transcripts, or subagent runs, or to recover what an earlier session did.
    17 repo stars
98. ▌
    Prompt Version Management · gabrielmoreira

    Manage prompt versions, run A/B tests across agent prompts, track performance regressions, and safely roll out prompt changes in production. Covers prompt diffing, semantic versioning, canary releases, and automated evaluation.
    17 repo stars
99. ▌
    X Twitter Automation · gabrielmoreira

    Design safe X/Twitter automation workflows for tweet search, reply reads, monitoring, posting, and agent-operated social media actions
    17 repo stars
100. ▌
     Habit Formation · gabrielmoreira

     Atomic habits, cue-routine-reward loops, habit stacking, accountability systems, and behavior change
     17 repo stars